437 lines
24 KiB
Markdown
437 lines
24 KiB
Markdown
# Changelog
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All notable changes to YAMS (Yet Another Memory System) will be documented in this file.
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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.1.0/),
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [v0.1.5] - 2025-08-13
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### Added
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- **LLM Ergonomics Enhancements**
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- Added `--paths-only` flag to search command for LLM-friendly output (one file path per line)
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- Enhanced codebase indexing workflows for AI agent integration
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- Improved documentation in PROMPT-eng.md with LLM-optimized YAMS patterns
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- Support for using YAMS as "memory layer for low context" in AI workflows
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- Magic number patterns for `#include`, `import`, `function`, `class`, shebang lines, etc.
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- Automatic programming language detection during recursive directory operations
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- **Grep Command**: Full-featured regex search within indexed file contents
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- Standard grep options: `-A/--after`, `-B/--before`, `-C/--context` for context lines
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- Pattern matching options: `-i` (case-insensitive), `-w` (whole word), `-v` (invert)
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- Output options: `-n` (line numbers), `-H` (with filename), `-c` (count), `-l` (files with matches)
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- Color highlighting support with `--color` option
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- Supports searching all indexed files or specific paths
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- **Knowledge Graph Integration in Get Command**
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- Added `--graph` flag to display related documents
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- Added `--depth` option (1-5) to control graph traversal depth
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- Shows documents in same directory and with similar extensions
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- Displays document relationships and metadata
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- **Line-Level Search with Context**
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- Enhanced search command with `-n/--line-numbers` flag
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- Added context options: `-A/--after`, `-B/--before`, `-C/--context`
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- Highlights matching lines with color
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- Shows surrounding context lines for better understanding
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- **C++17 Compatibility Mode** for broader system support
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- New `YAMS_CXX17_MODE` CMake option for legacy compiler compatibility
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- Support for GCC 9+, Clang 9+, older MSVC versions
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- Automatic fallbacks: `boost::span` for `std::span`, `fmt` for `std::format`
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- Compatible with Ubuntu 20.04 LTS, CentOS 8, older macOS versions
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- Comprehensive compatibility documentation and build matrix
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- Runtime feature detection with graceful degradation
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- **Enhanced Build System Flexibility**
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- Dual-mode compilation: full C++20 for modern systems, C++17 for legacy
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- Automatic dependency management with Conan and FetchContent fallbacks
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- Compiler-specific optimizations and warning configurations
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- Performance-oriented feature selection based on available capabilities
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- **MCP Server Feature Parity Enhancements** (~85% CLI-MCP parity achieved)
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- **Enhanced search_documents tool** with LLM ergonomics optimizations
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- Added `paths_only` parameter for LLM-friendly file path output (one per line)
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- Added line context parameters: `line_numbers`, `after_context`, `before_context`, `context`
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- Added `color` parameter for syntax highlighting control (always, never, auto)
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- **New grep_documents tool** with full CLI grep parity
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- Complete regex pattern matching across indexed document contents
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- Context options: `-A/--after`, `-B/--before`, `-C/--context` for surrounding lines
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- Pattern options: `ignore_case`, `word`, `invert` for flexible matching
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- Output modes: `line_numbers`, `with_filename`, `count`, `files_with_matches`, `files_without_match`
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- Color highlighting and `max_count` limit support
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- **Knowledge graph integration** in retrieve_document tool
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- Added `graph` parameter to include related documents in response
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- Added `depth` parameter (1-5) for graph traversal control
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- Added `include_content` parameter for full document content in graph responses
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- Finds documents in same directory, similar extensions, and metadata relationships
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- **New update_metadata tool** for document metadata management
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- Update metadata by document `hash` or `name` with automatic resolution
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- Support for multiple `key=value` metadata pairs in single operation
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- Verbose output option for detailed update information
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- **Enhanced list_documents tool** with comprehensive filtering and sorting
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- File type filtering: `type`, `mime`, `extension`, `binary`, `text` parameters
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- Time-based filtering: `created_after/before`, `modified_after/before`, `indexed_after/before`
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- Recent documents filter: `recent` parameter for N most recent files
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- Sorting control: `sort_by` (name, size, created, modified, indexed) and `sort_order` (asc, desc)
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- **Enhanced get_stats tool** with file type breakdown analysis
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- Added `file_types` parameter for detailed file type distribution
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- Shows file type counts, sizes, top extensions per type, and top MIME types
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- Provides comprehensive storage analytics for better content understanding
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### Enhanced
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- **MCP Tool Documentation** comprehensively updated with new schemas and examples
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- Added complete JSON schemas for all enhanced tools with parameter descriptions
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- Added practical usage examples for each tool capability
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- Updated integration documentation for Claude Desktop configuration
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- **YAMS-first workflow guidance**: default to indexing and searching code via YAMS pre-watch; avoid external grep/find/rg for repository queries.
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- **CLI docs enhanced** with pre-watch indexing workflow and YAMS-only search/grep examples.
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### Technical Details
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- **File type classification system** with MIME type analysis using `getFileTypeFromMime()` and `isBinaryMimeType()` helper methods
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- **Knowledge graph traversal** leverages document relationships through metadata repository queries
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- **LLM ergonomics optimizations** reduce context usage while maintaining full functionality
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- **Tool schema definitions** follow JSON-RPC standards for seamless MCP integration
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### Fixed
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- **Indexing Tests**: Updated for new API with proper factory function declarations
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- **Namespace Issues**: Fixed forward declarations in document_indexer.h
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- **CLI11 Conflicts**: Resolved `-h` flag conflict in grep command by using only `--no-filename`
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- **Test Suite Stabilization**
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- Fixed SEGV crash in vector_database_tests (DocumentChunkerTest bounds checking)
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- Fixed AddressSanitizer container overflow in detection_tests
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- Added thread safety to FixtureManager test infrastructure with proper mutex protection
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- Added thread safety to FileTypeDetector for libmagic operations (not thread-safe by default)
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- Fixed compilation errors in multiple test files (header includes, error codes, GMock dependencies)
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- Fixed EXPECT_NO_THROW macro usage in detection tests
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- **Recursive Add Pattern Parsing**
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- Fixed CLI11 comma-separated pattern handling in `--include` and `--exclude` options
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- Now properly splits patterns like `"*.cpp,*.h,*.md"` into individual patterns
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- Added proper whitespace trimming and empty pattern filtering
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- **CI/CD Pipeline Improvements**
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- Fixed Conan options quoting for proper test builds (`"yams/*:build_tests=True"`)
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- Added explicit `YAMS_BUILD_TESTS=ON` to CMake configuration
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- Added individual test target builds before running ctest
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- Implemented graceful test failure handling (CI continues, reports detailed results)
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- Added ASAN relaxation options for CI environment compatibility
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- Fixed YAML syntax error in release.yml (Python script indentation)
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## [v0.1.3] - 2025-08-13
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### Added
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- **Multi-Channel Package Distribution System**
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- Universal install script with platform detection (Linux/macOS, x86_64/ARM64)
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- One-line installation: `curl -fsSL https://raw.githubusercontent.com/trvon/yams/main/install.sh | bash`
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- Checksum verification and retry logic for secure downloads
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- Custom installation directory support and shell completion setup
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- Environment variable customization (YAMS_VERSION, YAMS_INSTALL_DIR, etc.)
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- **Docker Container Support**
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- Multi-stage Dockerfile with optimized Ubuntu-based runtime
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- Multi-architecture builds (AMD64/ARM64) via GitHub Container Registry
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- Automated publishing on tags and main branch pushes to `ghcr.io/trvon/yams`
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- Non-root user configuration for security best practices
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### Enhanced
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- **GitHub Release Workflow with Performance Reporting**
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- Comprehensive benchmark execution with JSON result collection
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- Code coverage reports (HTML/XML) generated for Linux builds
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- Performance metrics tables in release notes with timing and throughput data
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- Coverage and benchmark files automatically uploaded as release assets
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- Combined release notes with changelog and performance data
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- **CI/CD Pipeline Improvements**
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- Migrated all workflows to self-hosted runners (`self-hosted`, `Linux/macOS`, `X64/ARM64`)
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- Fixed compatibility issues (mapfile command, artifact upload paths)
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- Enhanced artifact collection (coverage reports, benchmark results, binaries)
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- Streamlined build process removing problematic Conan profile modifications
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### Notes
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- All packaging improvements implemented but not yet released pending verification
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- Release workflow enhanced to provide comprehensive performance and coverage data
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- Multi-platform distribution ready for production deployment
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## [0.1.2] - 2025-08-13
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### Added
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- **File Type and Time Filtering**: Enhanced list, get, and stats commands with comprehensive filtering
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- File type filters: `--type`, `--mime`, `--extension`, `--binary`, `--text`
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- Time filters: `--created-after/before`, `--modified-after/before`, `--indexed-after/before`
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- Supports flexible time formats (ISO 8601, relative like "7d", natural like "yesterday")
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- **Stats Command File Type Breakdown**: New `--file-types` flag shows detailed file type analysis
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- File type distribution with counts and sizes
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- Top file extensions per type
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- Top MIME types in the system
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- **Intelligent File Type Detection**: Uses magic_numbers.json as single source of truth
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- Runtime detection of data files across multiple installation paths
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- Graceful fallback to built-in patterns when JSON not found
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### Changed
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- **File Type Classification**: More accurate detection using magic numbers vs just extensions
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- **Data File Installation**: magic_numbers.json now properly installed to system paths
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## [0.1.1] - 2025-08-13
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### Fixed
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- Corrected Conan preset names (use `conan-release` instead of `build-conan-release`)
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- Fixed C++20 standard requirement in Conan profiles
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- Removed overly strict compiler warnings that broke dependency builds
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- Fixed gcovr regex patterns for coverage reports
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- Removed `-Wold-style-cast`, `-Wconversion`, `-Wsign-conversion`, and `-Woverloaded-virtual`
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- Keeps essential warnings while allowing third-party code to compile cleanly
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### Changed
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- **Build Instructions**: Standardized on `conan-release` preset across all platforms
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- Simplified build commands in README and documentation
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- Consistent build directory structure (`build/conan-release`)
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## [0.1.0] - 2025-08-12
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### Added
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- **List Command Enhancement**: Added `--recent N` flag to show N most recent documents
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- Filters to the N most recent documents before applying other sorting
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- Works with all existing sort options (name, size, date, hash)
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- Useful for quickly viewing recently added content
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- **PDF Text Extraction**: Full PDF text extraction support using PDFium library
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- Extract text from all PDF pages with proper UTF-16 to UTF-8 conversion
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- Extract PDF metadata (title, author, subject, keywords, creation date)
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- Support for searching within PDFs with context lines
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- Page-by-page extraction with configurable options
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- Automatic section detection for academic papers
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- **Metadata Update Command**: New `update` command for modifying document metadata
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- Update metadata by document hash or name
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- Support for multiple key-value pairs in single command
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- Enables task tracking and status management workflows
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- Works with both file and stdin documents
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- **Task Tracking System**: Comprehensive benchmark and test enhancement tracking
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- PBI documentation structure for systematic improvement
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- Task status tracking via metadata updates
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- Progress monitoring capabilities
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- **KG Hybrid Scoring (default)**: Hybrid search integrates Keyword + Vector + Knowledge Graph
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- Enabled by default in both CLI and MCP via a shared SearchEngineBuilder
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- Fails open to metadata/keyword-only when KG is unavailable
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### Fixed
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- **Reference Counter Transaction IDs**: Fixed UNIQUE constraint violation in ref_transactions
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- Removed manual transaction ID management
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- Now uses SQLite AUTOINCREMENT for guaranteed unique IDs
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- Prevents "UNIQUE constraint failed" errors when multiple ReferenceCounter instances exist
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- **Duplicate Document Handling**: Fixed metadata constraint errors when re-adding existing documents
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- Detects high deduplication ratio (≥99%) and updates existing metadata instead of inserting
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- Properly handles both new and existing documents
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- Updates indexed timestamp for existing documents
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- **Name Resolution for Commands**: Fixed document lookup by name for stdin documents
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- get, cat, and update commands now properly find stdin documents by name
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- Uses search functionality as fallback when path-based search fails
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- Supports both file-based and stdin documents uniformly
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- Automatic platform detection (mac-arm64, mac-x64, linux-x64, linux-arm64, win-x64)
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- FetchContent integration for non-Conan builds
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- Conditional compilation with YAMS_HAS_PDF_SUPPORT flag
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- Installs libpdfium.dylib into the install lib directory and sets its install_name to @rpath/libpdfium.dylib
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- Patches installed executables to reference @rpath/libpdfium.dylib and adds rpath @loader_path/../lib
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- Eliminates dyld errors like "Library not loaded: ./libpdfium.dylib"
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- Created header file for UpdateCommand class
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- Fixed compilation errors in update_command.cpp
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- Resolved conflicts between Conan and FetchContent for Google Benchmark
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- Fixed imgui.h include path for browse_command.cpp
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- Fixed compilation issues with performance benchmarks
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### Changed
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- **Extraction Module**: Enhanced to support multiple file formats
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- Modular extractor registration system
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- Extensible architecture for future format support
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- **Logging Verbosity**: Storage operations now use debug level instead of info
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- "Stored file" messages only appear in verbose/debug mode
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- Cleaner output for normal operations
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### Known Issues
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- **Performance Benchmarks**: Storage benchmarks cause segmentation fault after Rabin chunking tests
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- SHA256 benchmarks work correctly (2.59 GB/s for large files)
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- Rabin chunking benchmarks work correctly (178 MB/s)
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- Storage fixture initialization causes crash - to be fixed in future update
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## [0.0.6] - 2025-08-11
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### Added
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- TUI Browser Improvements
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### Fixed
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- Fixed unique_ptr copy errors in query parser benchmarks
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- Resolved compression error handler warnings on Ubuntu 22.04
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- Improved error handling and warning cleanup for better compiler compatibility
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- Removed hardcoded widget dimensions that broke small terminal displays
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- Fixed non-functional scrolling in document lists
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- Improved loading state management and race condition handling
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- Enhanced document preview formatting and metadata display
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## [0.0.5] - 2025-08-11
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### Added
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- **Build System Enhancements**:
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- Automatic std::format detection with fallback to fmt library for older compilers
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- Improved ncurses detection for Linux builds with clear error messages
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- BUILD-GCC.md documentation for building with GNU toolchain
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- **Search Improvements**:
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- Word-by-word processing for multi-word queries (e.g., "chain event ingestion" searches each word independently)
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- Minimum-should-match scoring (50% of query words must match by default)
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- Intelligent result aggregation with boost for documents matching all query words
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- Edit distance-based scoring (closer matches score higher)
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- Automatic fallback to fuzzy search when FTS5 fails
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- **Hash search capability**: Search documents by SHA256 hash (full or partial, minimum 8 characters)
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- **Verbosity control**: Concise output by default, detailed output with --verbose flag
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- Auto-detection of hash format in queries (8-64 hexadecimal characters automatically trigger hash search)
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- **MCP Server Enhancements**:
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- Updated to use metadata repository path with all v0.0.5 search improvements
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- Added fuzzy search support to MCP server tools with configurable similarity threshold
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- Enhanced search_documents tool with fuzzy and similarity parameters
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### Fixed
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- Proper handling of hyphens in queries like "PBI-6", "task-4", "feature-123"
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- Special characters (@, #, ?, :, /, \, [], {}, ()) no longer cause SQL errors
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- Advanced FTS5 operators (AND, OR, NOT, NEAR) still available for power users
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- **Fuzzy search matching**: Completely rewrote trigram similarity calculation
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- **CI/CD Pipeline**:
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- Added install step verification to ensure artifacts are created
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- Added libncurses-dev to Ubuntu dependencies
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- Enabled Ubuntu traditional (non-Conan) builds in CI matrix
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### Changed
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- **Search indexing strategy**: Enhanced to support both single and multi-word queries effectively
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- Documents now indexed at word level in addition to full content
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- Keywords extracted more comprehensively with 2-word phrases
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- Improved tokenization with punctuation handling
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- **Error handling**: FTS5 failures now gracefully fall back to fuzzy search instead of returning errors
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## [0.0.4] - 2025-08-11
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### Added
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- **Directory-based workflows** with collections and snapshots for multi-folder ingestion
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- `add --collection <name>`: Add documents to a named collection for organization
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- `add --snapshot-id <id> --snapshot-label <label>`: Add documents to a snapshot for point-in-time grouping
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- `add --recursive`: Recursively add files from directories
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- `restore --collection <name>`: Restore all documents from a specific collection
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- `restore --snapshot-id <id>`: Restore all documents from a specific snapshot
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- `restore --layout <template>`: Flexible output patterns like `{collection}/{path}` for restore operations
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- **MCP Server Tools** for directory operations with full CLI parity
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- `add_directory`: Add directory contents with collection/snapshot support
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- `restore_collection`: Restore documents from a collection to filesystem
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- `restore_snapshot`: Restore documents from a snapshot to filesystem
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- `list_collections`: List available collections
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- `list_snapshots`: List available snapshots
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- **CLI verbosity control**: All CLI commands now have concise output by default
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- Use `--verbose` flag for detailed JSON metadata output
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- Reduces context window usage while maintaining functionality
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- **MCP Server enabled by default** in all builds for integrated AI tool support
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### Changed
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- **Database schema enhanced** with collections and snapshots metadata (migration v6)
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- New indexes for efficient collection and snapshot queries
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- Metadata tables support `collection`, `snapshot_id`, and `snapshot_label` fields
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- **CLI output standardized** to be concise by default, verbose on request
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- **Build system updated** to enable MCP server by default in Conan builds
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### Fixed
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- **Version consistency**: MCP server now uses same version system as CLI (was hardcoded "1.0.0")
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- **ImTUI integration**: Resolved ncurses symbol versioning conflicts using ExternalProject_Add
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- **FTS5 support**: Enabled SQLite full-text search in Conan configuration
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- **Conan 2.0 compatibility**: Fixed all C++20 build issues with external dependencies
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- **Test suite improvements**: Comprehensive fixes for CI/CD reliability
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- Fixed GMock header compilation errors in MCP tests (missing `GTest::gmock` dependency)
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- Fixed SlidingWindowChunker infinite loop caused by unsigned integer underflow
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- Updated chunker test expectations to use realistic tolerances for word boundary preservation
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- Fixed metadata repository tests API compatibility (ConnectionPool vs Database constructor)
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- Resolved performance-dependent test failures in Rabin chunker (reduced expectations from 200MB/s to 100MB/s)
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### Developer Notes
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- Database migration system handles schema updates automatically
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- All directory operations are scoped to prevent accidental mass operations
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- MCP server integration provides seamless AI tool access to YAMS functionality
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- Build system now supports both CLI and MCP server components by default
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## [0.0.3] - 2025-08-11
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### Added
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- **MCP Tools**: New Model Context Protocol tools supporting v0.0.2 CLI enhancements
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- `delete_by_name`: Delete documents by name, multiple names, or glob patterns with dry-run support
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- `get_by_name`: Retrieve document content by name instead of hash
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- `cat_document`: Display document content directly (similar to CLI cat command)
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- `list_documents`: List stored documents with filtering by pattern and tags
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- **TUI Browser migrated to ImTUI**: Complete rewrite from FTXUI to ImTUI for better compatibility
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- Full-screen document viewer with hex mode toggle (Enter to open, x to toggle)
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- External pager integration (o key) with proper terminal suspend/resume
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- Preview pane scrolling when focused (Tab to switch columns, j/k to scroll)
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- Extended command mode (:hex, :open, :refresh, :help, :q)
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### Changed
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- Browse command refactored to use modular TUI components and improved UX
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### Fixed
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- Safer preview of binary content and better CRLF handling
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- **Build System**: Resolved multiple compilation issues preventing CI/CD success
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- Fixed switch statement scope error in `posix_storage.cpp` by adding proper braces
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- Added missing `#include <sys/resource.h>` for POSIX resource limits
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- Added missing `#include <cmath>` in embedding tests for `std::isfinite` and `std::sqrt`
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- Added missing `#include <algorithm>` for `std::all_of` in manifest manager
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- Fixed designated initializer field ordering in `compressed_storage_engine.cpp`
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- Fixed type conversion from `std::string_view` to `Hash` type
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- Replaced `std::ranges::all_of` with `std::all_of` for broader compiler compatibility
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### Developer Notes
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- All compilation fixes tested locally with successful build completion
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- Prepared for GitHub Actions CI/CD pipeline success
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- Build now completes without errors on macOS (AppleClang 17.0.0)
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## [0.0.2] - 2025-08-11
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### Added
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- **Name-based operations**: All major commands now support name-based access
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- `delete --name <name>`: Delete document by name
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- `delete --names <name1,name2>`: Delete multiple documents by names
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- `delete --pattern <pattern>`: Delete documents matching glob pattern (e.g., `*.log`)
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- `get --name <name>`: Retrieve document by name
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- `cat` command: New command for displaying content directly to stdout
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- `cat <hash>` or `cat --name <name>`: Output content for piping and viewing
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- **Command aliases**: Unix-style command aliases for better ergonomics
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- `rm` as alias for `delete`
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- `ls` as alias for `list`
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- **Delete command enhancements**:
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- `--dry-run` flag: Preview what would be deleted without actually deleting
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- `--verbose` flag: Show detailed deletion information
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- Bulk deletion support with pattern matching
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- Improved error handling for ambiguous names
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- **Browse command improvements**:
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- Command mode with `:` or `p` key (vi-like commands)
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- Preview pane now shows actual content from metadata repository
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- Binary content detection for preview
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- Better search functionality with fuzzy/exact toggle
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- **Documentation**:
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- Added MCP tools documentation (`docs/api/mcp_tools.md`)
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- Updated CLI documentation with new features
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- Added this CHANGELOG.md for tracking changes
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### Fixed
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- **CI/CD**: Fixed compilation errors by adding missing includes in `compressor_interface.h`
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- Added `#include <functional>`
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- Added `#include <unordered_map>`
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- **Browse command**: Fixed preview loading for documents with metadata content
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### Changed
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- **Get command**: Now supports both hash and name-based retrieval
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- **Delete command**: Refactored to use CLI11 option groups for better argument handling
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- **Browse command**: Enhanced with command mode and better content preview
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### Developer Notes
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- Integration tests created for delete command functionality
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- Improved CLI command structure using option groups
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- Better separation of concerns between viewing (`cat`) and downloading (`get`) operations
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## [0.0.1] - 2025-08-11
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### Added
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- Initial release of YAMS
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- Core content-addressable storage functionality
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- MCP (Model Context Protocol) server support
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- Basic CLI commands: init, add, get, delete, list, search
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- Metadata repository with SQLite backend
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- Compression support with multiple algorithms
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- Deduplication at chunk level
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- TUI browser interface
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- Authentication and key management
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- Configuration management
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- Stats and monitoring capabilities
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---
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*Note: This project follows semantic versioning. Given the 0.x.y version, the API is still considered unstable and may change between minor versions.*
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