yams/tests/benchmarks/search/retrieval_quality_bench.cpp

/*
  retrieval_quality_bench.cpp - RAG Retrieval Quality Benchmark

  Uses daemon-based ingestion to properly test retrieval quality with IR metrics.

  Usage:
    YAMS_TEST_SAFE_SINGLE_INSTANCE=1 ./builddir/tests/benchmarks/retrieval_quality_bench

  Environment variables:
    YAMS_TEST_SAFE_SINGLE_INSTANCE=1  - Required to prevent GlobalIOContext reset
    YAMS_BENCH_CORPUS_SIZE=N          - Number of documents to generate (default: 50)
    YAMS_BENCH_NUM_QUERIES=N          - Number of test queries (default: 10)
    YAMS_BENCH_TOPK=N                 - Retrieve top K results (default: 10)
    YAMS_BENCH_DATASET=<name>         - Use synthetic, BEIR, or local-manifest dataset
    YAMS_BENCH_DATASET_PATH=...       - Path to BEIR directory or benchmark_manifest.json root
    YAMS_BENCH_EMBED_BACKEND=simeon|onnx
                                          Embedding backend (default: simeon)
    YAMS_BENCH_ENABLE_GLINT=1         - Opt into Glint/GLiNER entity extraction on simeon runs
    YAMS_BENCH_ENABLE_ONNX_RERANK=1   - Opt into ONNX reranker on simeon runs
    YAMS_BENCH_TOPOLOGY_MODE=disabled|weak_query_only|hybrid_assist
    YAMS_BENCH_TOPOLOGY_EXPANSION=clusters|graph_neighbors
                                          Cluster partition vs pure semantic_neighbor expansion
    YAMS_BENCH_TOPOLOGY_ENGINE=connected|louvain|kmeans
                                          Write topology engine into isolated config
    YAMS_BENCH_TOPOLOGY_REPRESENTATIVE_RULE=degree|medoid
                                          Write topology.representative_rule into isolated config
    YAMS_BENCH_TOPOLOGY_BQ_ROTATION=none|fwht
                                          Write search.topology.bq_rotation into isolated config
    YAMS_BENCH_TOPOLOGY_ROUTE_SCORING=current|size_weighted|seed_coverage
                                          Topology route scoring policy
    YAMS_BENCH_TOPOLOGY_SPARSE_DENSE_ALPHA=0..1
                                          Sparse seed overlap vs dense centroid blend
    YAMS_BENCH_TOPOLOGY_MIN_ROUTE_SCORE=N.N
                                          Reject routed clusters below score
    YAMS_BENCH_TOPOLOGY_MEDOID_ONLY_EXPANSION=1
                                          Expand only route medoids, not full clusters
    YAMS_BENCH_TOPOLOGY_MIN_CLUSTERS=N     Minimum adaptive routed-cluster prefix
    YAMS_BENCH_TOPOLOGY_MAX_SEED_DOCUMENTS=N
                                          Cap ranked lexical routing evidence
    YAMS_BENCH_TOPOLOGY_ROAD_HOPS=N        Road beam hops for route_only/augment (0 = off)
    YAMS_BENCH_TOPOLOGY_ROAD_BEAM_WIDTH=N  Clusters kept per road hop
    YAMS_BENCH_TOPOLOGY_ROAD_WALK_WINDOW=N Positions walked around each routed hit along the
                                          cluster walk order (route_only/augment; 0 = off)
    YAMS_BENCH_TOPOLOGY_ROAD_MAX_PER_CLUSTER=N
                                          Roads kept per cluster at topology build (0 = none)
    YAMS_BENCH_TOPOLOGY_ROAD_ORDER=none|time|session|similarity_chain
                                          Cluster walk order stored at topology build
    YAMS_BENCH_TOPOLOGY_ADAPTIVE_PROBE_SCORE_GAP=N.N
                                          Grow route prefix while scores remain near the best
    YAMS_BENCH_TOPOLOGY_NARROW_MIN_BOUNDARY_MARGIN=N.N
                                          Abstain when selected/excluded route margin is smaller
    YAMS_BENCH_TOPOLOGY_CLUSTER_OUTPUT=... Export evaluation-only cluster memberships as JSON
    YAMS_BENCH_TOPOLOGY_SOURCE=vector|fts5|keyphrase|segment_keyphrase|kg|gliner|header|theme
                                          Benchmark semantic_neighbor seeding source for topology
    YAMS_SEARCH_ENABLE_TOPOLOGY_WEAK_ROUTING=1 - Legacy opt-in topology weak-query routing
    YAMS_SEARCH_TOPOLOGY_MAX_CLUSTERS=N        - Cap routed topology clusters (default: 2)
    YAMS_SEARCH_TOPOLOGY_MAX_DOCS=N            - Cap routed topology docs (default: 64)
    YAMS_SEARCH_TOPOLOGY_GRAPH_VECTOR_SEED_PROBE=N
                                          GraphNeighbors seed ANN k (0=off/product default; opt-in
  e.g. 16)

  Tuning for faster ingestion (recommended for large corpora):
    YAMS_POST_EMBED_CONCURRENT=12     - Parallel embedding workers (default: 4-8)
    YAMS_POST_EXTRACTION_CONCURRENT=12- Parallel content extraction (default: 4)
    YAMS_POST_KG_CONCURRENT=12        - Parallel KG extraction (default: 4)
    YAMS_POST_INGEST_BATCH_SIZE=24    - Documents per batch (default: 8, adaptive)
    YAMS_EMBED_CHANNEL_CAPACITY=16384 - Embedding queue capacity (default: 8192)
    YAMS_DB_POOL_MAX=48               - Database connection pool (default: 20)

  Supported BEIR datasets (download from
  https://public.ukp.informatik.tu-darmstadt.de/thakur/BEIR/datasets/): scifact       - Scientific
  fact verification (300 queries, 5K docs) cqadupstack   - Community Q&A including programming (13K
  queries, 457K docs) nfcorpus      - NutritionFacts corpus (323 queries, 3.6K docs) arguana       -
  Argument retrieval (1.4K queries, 8.7K docs) scidocs       - Scientific document similarity (1K
  queries, 25K docs) fiqa          - Financial question answering (648 queries, 57K docs) quora -
  Duplicate question retrieval (10K queries, 523K docs) hotpotqa      - Multi-hop question answering
  (7.4K queries, 5.2M docs) fever         - Fact verification (6.7K queries, 5.4M docs)
    climate-fever - Climate claim verification (1.5K queries, 5.4M docs)
    dbpedia-entity- Entity retrieval (400 queries, 4.6M docs)
    trec-covid    - COVID-19 retrieval (50 queries, 171K docs)
    touche-2020   - Argument retrieval (49 queries, 382K docs)

  Example (code-related benchmark):
    mkdir -p ~/.cache/yams/benchmarks && cd ~/.cache/yams/benchmarks
    curl -L -o cqadupstack.zip
  https://public.ukp.informatik.tu-darmstadt.de/thakur/BEIR/datasets/cqadupstack.zip unzip
  cqadupstack.zip YAMS_TEST_SAFE_SINGLE_INSTANCE=1 YAMS_BENCH_DATASET=cqadupstack
  ./builddir/tests/benchmarks/retrieval_quality_bench

  Example (repo fixture / local manifest):
    YAMS_TEST_SAFE_SINGLE_INSTANCE=1 \
    YAMS_BENCH_DATASET=local-manifest \
    YAMS_BENCH_DATASET_PATH=tests/benchmarks/data/retrieval_manifest_mini \
    ./builddir/tests/benchmarks/retrieval_quality_bench --benchmark_filter=BM_RetrievalQuality
*/

#include <sqlite3.h>
#include <nlohmann/json.hpp>
#include <spdlog/spdlog.h>
#include <benchmark/benchmark.h>

#include "retrieval_benchmark_support.h"
#include "tests/common/test_helpers_catch2.h"
#include "tests/integration/daemon/test_daemon_harness.h"
#include <yams/cli/cli_sync.h>
#include <yams/cli/search_runner.h>
#include <yams/common/fs_utils.h>
#include <yams/crypto/hasher.h>
#include <yams/daemon/client/asio_connection_pool.h>
#include <yams/daemon/client/daemon_client.h>
#include <yams/daemon/components/ServiceManager.h>
#include <yams/daemon/resource/model_provider.h>
#include <yams/daemon/resource/plugin_trust.h>
#include <yams/search/internal_benchmark.h>
#include <yams/search/topology_routing_session.h>
#include <yams/topology/topology_metadata_store.h>
#include <yams/vector/vector_database.h>

#include <algorithm>
#include <cctype>
#include <chrono>
#include <cmath>
#include <cstdlib>
#include <cstring>
#include <filesystem>
#include <fstream>
#include <iomanip>
#include <iostream>
#include <map>
#include <memory>
#include <numeric>
#include <optional>
#include <random>
#include <set>
#include <sstream>
#include <string>
#include <string_view>
#include <thread>
#include <unordered_map>
#include <unordered_set>
#include <vector>
#include <yams/compat/unistd.h>

namespace fs = std::filesystem;
using namespace std::chrono_literals;
using namespace yams;
using json = nlohmann::json;

class BenchmarkMockModelProvider final : public yams::daemon::IModelProvider {
public:
    explicit BenchmarkMockModelProvider(std::size_t dim) : dim_(dim) {}

    void setProgressCallback(std::function<void(const yams::daemon::ModelLoadEvent&)> cb) override {
        progress_ = std::move(cb);
    }

    Result<std::vector<float>> generateEmbedding(const std::string& text) override {
        return generateEmbeddingFor(defaultModelName_, text);
    }

    Result<std::vector<std::vector<float>>>
    generateBatchEmbeddings(const std::vector<std::string>& texts) override {
        return generateBatchEmbeddingsFor(defaultModelName_, texts);
    }

    Result<std::vector<float>> generateEmbeddingFor(const std::string& modelName,
                                                    const std::string& text) override {
        if (!isModelLoaded(modelName)) {
            return Error{ErrorCode::NotFound, "model not loaded"};
        }
        std::vector<float> embedding(dim_, 0.0f);
        std::hash<std::string> hasher;
        const auto seed = hasher(text);
        for (std::size_t i = 0; i < embedding.size(); ++i) {
            embedding[i] = static_cast<float>((seed ^ (i * 131)) % 1000) / 1000.0f;
        }
        return embedding;
    }

    Result<std::vector<std::vector<float>>>
    generateBatchEmbeddingsFor(const std::string& modelName,
                               const std::vector<std::string>& texts) override {
        if (!isModelLoaded(modelName)) {
            return Error{ErrorCode::NotFound, "model not loaded"};
        }
        std::vector<std::vector<float>> batch;
        batch.reserve(texts.size());
        for (const auto& text : texts) {
            auto embedding = generateEmbeddingFor(modelName, text);
            if (!embedding) {
                return embedding.error();
            }
            batch.push_back(std::move(embedding.value()));
        }
        return batch;
    }

    Result<void> loadModel(const std::string& modelName) override {
        if (progress_) {
            yams::daemon::ModelLoadEvent ev;
            ev.modelName = modelName;
            ev.phase = "loading";
            ev.message = "benchmark mock loading";
            progress_(ev);
        }
        loadedModels_.insert(modelName);
        defaultModelName_ = modelName;
        if (progress_) {
            yams::daemon::ModelLoadEvent ev;
            ev.modelName = modelName;
            ev.phase = "completed";
            ev.message = "benchmark mock ready";
            progress_(ev);
        }
        return Result<void>();
    }

    Result<void> unloadModel(const std::string& modelName) override {
        loadedModels_.erase(modelName);
        return Result<void>();
    }

    bool isModelLoaded(const std::string& modelName) const override {
        return loadedModels_.contains(modelName);
    }

    std::vector<std::string> getLoadedModels() const override {
        return std::vector<std::string>(loadedModels_.begin(), loadedModels_.end());
    }

    size_t getLoadedModelCount() const override { return loadedModels_.size(); }

    Result<yams::daemon::ModelInfo> getModelInfo(const std::string& modelName) const override {
        if (!isModelLoaded(modelName)) {
            return Error{ErrorCode::NotFound, "model not loaded"};
        }
        yams::daemon::ModelInfo info;
        info.name = modelName;
        info.embeddingDim = dim_;
        return info;
    }

    size_t getEmbeddingDim(const std::string&) const override { return dim_; }
    std::shared_ptr<yams::vector::EmbeddingGenerator>
    getEmbeddingGenerator(const std::string& = "") override {
        return nullptr;
    }
    std::string getProviderName() const override { return "BenchmarkMockProvider"; }
    std::string getProviderVersion() const override { return "1.0"; }
    bool isAvailable() const override { return true; }
    size_t getMemoryUsage() const override { return 0; }
    void releaseUnusedResources() override {}
    void shutdown() override { loadedModels_.clear(); }

private:
    std::size_t dim_;
    std::string defaultModelName_;
    std::unordered_set<std::string> loadedModels_;
    std::function<void(const yams::daemon::ModelLoadEvent&)> progress_;
};

template <typename T, typename Rep, typename Period>
static Result<T> benchRunSync(boost::asio::awaitable<Result<T>> aw,
                              const std::chrono::duration<Rep, Period>& timeout) {
    return yams::cli::run_sync<T, Rep, Period>(std::move(aw), timeout);
}

static std::uint64_t parseAdditionalStat(const std::map<std::string, std::string>& stats,
                                         std::string_view key) {
    const auto it = stats.find(std::string(key));
    if (it == stats.end() || it->second.empty()) {
        return 0;
    }
    try {
        return std::stoull(it->second);
    } catch (...) {
        return 0;
    }
}

static Result<yams::search::BenchmarkDaemonGraphState>
observeDaemonGraphState(yams::daemon::DaemonClient& client) {
    yams::daemon::GetStatsRequest request;
    request.includeHealth = true;
    auto statsResult = benchRunSync(client.getStats(request), 30s);
    if (!statsResult) {
        return statsResult.error();
    }

    const auto& stats = statsResult.value().additionalStats;
    yams::search::BenchmarkDaemonGraphState state;
    state.semanticDocumentsProcessed = parseAdditionalStat(stats, "embed_semantic_docs_processed");
    state.semanticEdgesCreated = parseAdditionalStat(stats, "embed_semantic_edges_created");
    state.semanticUpdateErrors = parseAdditionalStat(stats, "embed_semantic_update_errors");
    state.topologyDocumentNodes = parseAdditionalStat(stats, "kg_topology_document_nodes");
    state.topologySemanticEdges = parseAdditionalStat(stats, "kg_topology_semantic_edges");
    state.topologyDocumentsWithNeighbors =
        parseAdditionalStat(stats, "kg_topology_documents_with_neighbors");
    state.topologyIsolatedDocuments = parseAdditionalStat(stats, "kg_topology_isolated_documents");
    state.postIngestQueued = parseAdditionalStat(stats, "post_ingest_queued");
    state.postIngestInFlight = parseAdditionalStat(stats, "post_ingest_inflight");
    state.embeddingQueued = parseAdditionalStat(stats, "embed_svc_queued");
    state.embeddingInFlight = parseAdditionalStat(stats, "embed_in_flight");
    state.writeQueued = parseAdditionalStat(stats, "write_queue_depth");
    state.writeInFlight = parseAdditionalStat(stats, "write_in_flight");
    return state;
}

static std::string describeDaemonGraphState(const yams::search::BenchmarkDaemonGraphState& state) {
    std::ostringstream message;
    message << "semantic_docs_processed=" << state.semanticDocumentsProcessed
            << ", semantic_edges_created=" << state.semanticEdgesCreated
            << ", topology_document_nodes=" << state.topologyDocumentNodes
            << ", topology_semantic_edges=" << state.topologySemanticEdges
            << ", topology_documents_with_neighbors=" << state.topologyDocumentsWithNeighbors
            << ", topology_isolated_documents=" << state.topologyIsolatedDocuments
            << ", semantic_update_errors=" << state.semanticUpdateErrors
            << ", post_ingest_queued=" << state.postIngestQueued
            << ", post_ingest_in_flight=" << state.postIngestInFlight
            << ", embed_queued=" << state.embeddingQueued
            << ", embed_in_flight=" << state.embeddingInFlight
            << ", write_queued=" << state.writeQueued
            << ", write_in_flight=" << state.writeInFlight;
    return message.str();
}

static Result<yams::search::BenchmarkDaemonGraphState>
waitForDaemonNativeGraph(yams::daemon::DaemonClient& client,
                         std::uint64_t minimumSemanticDocuments) {
    spdlog::info("Waiting for daemon-native semantic graph production before query evaluation...");
    const auto deadline = std::chrono::steady_clock::now() + 300s;

    // Semantic-neighbor backfill is intentionally idle-only. A tight getStats loop keeps a
    // non-health IPC connection active and prevents TuningManager from publishing an idle
    // snapshot, so observing readiness too frequently can stop the work itself.
    constexpr auto kObservationInterval = 15s;
    auto observationAt = std::chrono::steady_clock::now() + kObservationInterval;
    yams::search::BenchmarkDaemonGraphState state;
    std::optional<yams::search::BenchmarkDaemonGraphState> previousReadyState;

    while (std::chrono::steady_clock::now() < deadline) {
        const auto now = std::chrono::steady_clock::now();
        if (now < observationAt) {
            std::this_thread::sleep_for(std::min(
                500ms, std::chrono::duration_cast<std::chrono::milliseconds>(observationAt - now)));
            continue;
        }
        observationAt = now + kObservationInterval;

        auto observation = observeDaemonGraphState(client);
        if (!observation) {
            previousReadyState.reset();
            spdlog::warn("Daemon graph observation failed: {}", observation.error().message);
            continue;
        }
        state = std::move(observation.value());
        spdlog::info("Daemon graph wait: {}", describeDaemonGraphState(state));

        if (!yams::search::benchmarkDaemonGraphReady(state, minimumSemanticDocuments)) {
            previousReadyState.reset();
            continue;
        }
        if (!previousReadyState.has_value() ||
            !yams::search::benchmarkDaemonGraphProductionStable(*previousReadyState, state)) {
            previousReadyState = state;
            continue;
        }

        spdlog::info("Daemon-native semantic graph ready: {}", describeDaemonGraphState(state));
        return state;
    }

    return Error{ErrorCode::Timeout,
                 "Daemon-native semantic graph not ready before benchmark queries (" +
                     describeDaemonGraphState(state) + ")."};
}

static Result<void> exportTopologyClusters(yams::daemon::ServiceManager& serviceManager,
                                           std::string_view snapshotId) {
    const char* rawOutput = std::getenv("YAMS_BENCH_TOPOLOGY_CLUSTER_OUTPUT");
    if (rawOutput == nullptr || *rawOutput == '\0') {
        return {};
    }

    yams::topology::MetadataKgTopologyArtifactStore store(serviceManager.getMetadataRepo(),
                                                          serviceManager.getKgStore());
    auto loaded = store.loadLatest(snapshotId);
    if (!loaded) {
        return loaded.error();
    }
    if (!loaded.value().has_value()) {
        return Error{ErrorCode::NotFound, "topology snapshot unavailable for cluster export"};
    }

    const auto& snapshot = *loaded.value();
    json memberships = json::array();
    for (const auto& membership : snapshot.memberships) {
        memberships.push_back({{"document_hash", membership.documentHash},
                               {"cluster_id", membership.clusterId},
                               {"overlap_cluster_ids", membership.overlapClusterIds}});
    }

    json clusters = json::array();
    for (const auto& cluster : snapshot.clusters) {
        clusters.push_back({{"cluster_id", cluster.clusterId},
                            {"member_count", cluster.memberCount},
                            {"overlap_cluster_ids", cluster.overlapClusterIds}});
    }

    const fs::path outputPath(rawOutput);
    std::error_code ec;
    if (!outputPath.parent_path().empty()) {
        fs::create_directories(outputPath.parent_path(), ec);
        if (ec) {
            return Error{ErrorCode::WriteError,
                         "failed to create topology cluster output directory: " + ec.message()};
        }
    }
    std::ofstream output(outputPath, std::ios::trunc);
    if (!output) {
        return Error{ErrorCode::WriteError, "failed to open topology cluster output"};
    }
    output << json{{"algorithm", snapshot.algorithm},
                   {"snapshot_id", snapshot.snapshotId},
                   {"topology_epoch", snapshot.topologyEpoch},
                   {"memberships", std::move(memberships)},
                   {"clusters", std::move(clusters)}}
                  .dump(2)
           << '\n';
    if (!output) {
        return Error{ErrorCode::WriteError, "failed to write topology cluster output"};
    }
    return {};
}

static Result<yams::daemon::TopologyManager::RebuildStats>
rebuildCanonicalDaemonTopology(yams::daemon::ServiceManager& serviceManager,
                               std::string_view topologyAlgorithm) {
    auto& topologyManager = serviceManager.getTopologyManager();
    const auto deadline = std::chrono::steady_clock::now() + 60s;
    do {
        if (topologyManager.isRebuildInProgress()) {
            std::this_thread::sleep_for(50ms);
            continue;
        }
        auto rebuilt =
            topologyManager.rebuildArtifacts("benchmark_daemon_native_graph_canonicalization",
                                             false, {}, std::string(topologyAlgorithm));
        if (!rebuilt) {
            return rebuilt.error();
        }
        if (!rebuilt.value().skipped) {
            if (!rebuilt.value().stored) {
                return Error{ErrorCode::InvalidState,
                             "canonical topology rebuild did not publish a stored snapshot"};
            }
            return std::move(rebuilt.value());
        }
        std::this_thread::sleep_for(50ms);
    } while (std::chrono::steady_clock::now() < deadline);

    return Error{ErrorCode::Timeout, "timed out waiting for canonical topology rebuild"};
}

static Result<std::string>
loadTopologyRoutingConstructionFingerprint(yams::daemon::ServiceManager& serviceManager,
                                           std::string_view snapshotId) {
    yams::topology::MetadataKgTopologyArtifactStore store(serviceManager.getMetadataRepo(),
                                                          serviceManager.getKgStore());
    auto loaded = store.loadLatest(snapshotId);
    if (!loaded) {
        return loaded.error();
    }
    if (!loaded.value().has_value()) {
        return Error{ErrorCode::NotFound,
                     "canonical topology snapshot unavailable for fingerprinting"};
    }
    return yams::search::topologyRoutingConstructionFingerprint(*loaded.value());
}

// Helper to discover GLiNER model path for entity extraction
// Searches standard locations where yams init downloads models
static std::string discoverGlinerModelPath() {
    // Preferred model names in order
    const std::vector<std::string> model_names = {
        "gliner_small-v2.1-quantized",
        "gliner_small-v2.1",
        "gliner_medium-v2.1-quantized",
        "gliner_medium-v2.1",
    };

    // Build list of base directories to search
    std::vector<fs::path> search_dirs;

    // YAMS_GLINT_MODEL_PATH - explicit override
    if (const char* env_path = std::getenv("YAMS_GLINT_MODEL_PATH")) {
        if (fs::exists(env_path)) {
            spdlog::info("[Bench] Using GLiNER model from YAMS_GLINT_MODEL_PATH: {}", env_path);
            return env_path;
        }
    }

    // YAMS_DATA_DIR
    if (const char* data_dir = std::getenv("YAMS_DATA_DIR")) {
        search_dirs.emplace_back(fs::path(data_dir) / "models" / "gliner");
    }

    // YAMS_STORAGE
    if (const char* storage = std::getenv("YAMS_STORAGE")) {
        search_dirs.emplace_back(fs::path(storage) / "models" / "gliner");
    }

    // ~/.local/share/yams (XDG default)
    if (const char* home = std::getenv("HOME")) {
        search_dirs.emplace_back(fs::path(home) / ".local" / "share" / "yams" / "models" /
                                 "gliner");
    }

    // Development path
    search_dirs.emplace_back("/Volumes/picaso/yams/models/gliner");

    // Homebrew path
    search_dirs.emplace_back("/opt/homebrew/share/yams/models/gliner");

    // Search for models
    for (const auto& base_dir : search_dirs) {
        if (!fs::exists(base_dir)) {
            continue;
        }

        // Try preferred model names first
        for (const auto& model_name : model_names) {
            fs::path model_path = base_dir / model_name / "model.onnx";
            if (fs::exists(model_path)) {
                spdlog::info("[Bench] Found GLiNER model at: {}", model_path.string());
                return model_path.string();
            }
        }

        // Fall back to scanning directory for any model
        std::error_code ec;
        for (const auto& entry : fs::directory_iterator(base_dir, ec)) {
            if (!entry.is_directory())
                continue;
            fs::path model_path = entry.path() / "model.onnx";
            if (fs::exists(model_path)) {
                spdlog::info("[Bench] Found GLiNER model at: {}", model_path.string());
                return model_path.string();
            }
        }
    }

    spdlog::warn("[Bench] No GLiNER model found - entity extraction will use mock mode");
    return "";
}

static bool forceMockEmbeddingsForBench() {
    const char* env = std::getenv("YAMS_BENCH_FORCE_MOCK_EMBEDDINGS");
    return env && std::string_view(env) == "1";
}

static void ensureBenchmarkEmbeddingsReady(yams::test::DaemonHarness* harness, bool vectorsDisabled,
                                           bool forceMockEmbeddings, bool embedBackendSimeon) {
    if (!harness || !harness->daemon() || vectorsDisabled) {
        return;
    }

    auto serviceManager = harness->daemon()->getServiceManager();
    if (!serviceManager) {
        return;
    }

    if (forceMockEmbeddings) {
        std::size_t dim = 768;
        if (auto vectorDb = serviceManager->getVectorDatabase()) {
            dim = vectorDb->getConfig().embedding_dim;
        }
        auto sharedProvider = std::make_shared<BenchmarkMockModelProvider>(dim);
        serviceManager->testing_setModelProvider(sharedProvider);
    }

    if (embedBackendSimeon) {
        auto ready = serviceManager->ensureEmbeddingModelReadySync("simeon-default", {}, 10000,
                                                                   false, false);
        if (!ready) {
            spdlog::warn("[Bench] Simeon provider not ready for retrieval bench: {}",
                         ready.error().message);
        }
        return;
    }

    auto ready =
        serviceManager->ensureEmbeddingModelReadySync("all-MiniLM-L6-v2", {}, 10000, false, false);
    if (!ready) {
        spdlog::warn("[Bench] Embedding model not ready for retrieval bench: {}",
                     ready.error().message);
    }
}

using yams::bench::BEIRCorpusLoader;
using yams::bench::BEIRDataset;
using yams::bench::BEIRDocument;
using yams::bench::BEIRQuery;
using yams::bench::CorpusGenerator;
using yams::bench::RetrievalMetrics;
using yams::bench::StageMetricAccumulator;
using yams::bench::SyntheticCorpusMode;
using yams::bench::TestQuery;

static Result<BEIRDataset> loadSciFactDataset(const fs::path& cacheDir) {
    const char* home = std::getenv("HOME");
    if (!home) {
        return Error{ErrorCode::InvalidArgument, "HOME environment variable not set"};
    }

    fs::path scifactDir =
        cacheDir.empty() ? fs::path(home) / ".cache" / "yams" / "benchmarks" / "scifact" : cacheDir;

    BEIRDataset dataset;
    dataset.name = "SciFact";
    dataset.basePath = scifactDir;

    fs::path corpusFile = scifactDir / "corpus.jsonl";
    fs::path queriesFile = scifactDir / "queries.jsonl";
    fs::path qrelsFile = scifactDir / "qrels" / "test.tsv"; // Standard BEIR structure

    if (!fs::exists(corpusFile) || !fs::exists(queriesFile) || !fs::exists(qrelsFile)) {
        return Error{
            ErrorCode::NotFound,
            "SciFact dataset not found. Please download manually:\n"
            "  mkdir -p ~/.cache/yams/benchmarks && cd ~/.cache/yams/benchmarks\n"
            "  curl -L -o scifact.zip "
            "https://public.ukp.informatik.tu-darmstadt.de/thakur/BEIR/datasets/scifact.zip\n"
            "  unzip scifact.zip"};
    }

    std::ifstream corpusIn(corpusFile);
    std::string line;
    while (std::getline(corpusIn, line)) {
        if (line.empty())
            continue;
        try {
            auto j = json::parse(line);
            BEIRDocument doc;
            doc.id = j.value("_id", "");
            if (doc.id.empty())
                doc.id = j.value("id", "");
            doc.title = j.value("title", "");
            doc.text = j.value("text", "");
            yams::bench::readBEIRDocumentMetadata(j, doc);
            if (!doc.id.empty() && !doc.text.empty()) {
                dataset.documents[doc.id] = doc;
            }
        } catch (const json::exception& e) {
            spdlog::warn("Failed to parse corpus line: {}", e.what());
        }
    }
    corpusIn.close();

    std::ifstream queriesIn(queriesFile);
    while (std::getline(queriesIn, line)) {
        if (line.empty())
            continue;
        try {
            auto j = json::parse(line);
            BEIRQuery q;
            q.id = j.value("_id", "");
            if (q.id.empty())
                q.id = j.value("id", "");
            q.text = j.value("text", "");
            if (!q.id.empty() && !q.text.empty()) {
                dataset.queries[q.id] = q;
            }
        } catch (const json::exception& e) {
            spdlog::warn("Failed to parse query line: {}", e.what());
        }
    }
    queriesIn.close();

    std::ifstream qrelsIn(qrelsFile);
    bool firstLine = true;
    while (std::getline(qrelsIn, line)) {
        if (line.empty() || line[0] == '#')
            continue;
        // Skip header row
        if (firstLine) {
            firstLine = false;
            if (line.find("query-id") != std::string::npos)
                continue;
        }
        std::istringstream iss(line);
        std::string queryId, docId, scoreStr;
        // BEIR format: query-id, corpus-id, score (3 columns, no iteration)
        if (std::getline(iss, queryId, '\t') && std::getline(iss, docId, '\t') &&
            std::getline(iss, scoreStr, '\t')) {
            int score = std::stoi(scoreStr);
            dataset.qrels.emplace(queryId, yams::bench::BEIRQrel{.docId = docId, .score = score});
        }
    }
    qrelsIn.close();

    spdlog::info("Loaded BEIR dataset: {} documents, {} queries, {} qrels",
                 dataset.documents.size(), dataset.queries.size(), dataset.qrels.size());

    return dataset;
}

// Generic BEIR dataset loader — delegates to yams::bench::loadBEIRDataset.
static Result<BEIRDataset> loadBEIRDataset(const std::string& datasetName,
                                           const fs::path& cacheDir) {
    if (datasetName == "local-manifest") {
        return yams::bench::loadBenchmarkManifestDataset(datasetName, cacheDir);
    }
    return yams::bench::loadBEIRDataset(datasetName, cacheDir);
}

static Result<BEIRDataset> selectBenchmarkBEIRDataset(const std::string& datasetName,
                                                      const fs::path& cacheDir,
                                                      const std::optional<int>& maxDocsOpt,
                                                      const std::optional<int>& maxQueriesOpt) {
    Result<BEIRDataset> dsResult;
    if (datasetName == "scifact") {
        dsResult = loadSciFactDataset(cacheDir);
    } else {
        dsResult = loadBEIRDataset(datasetName, cacheDir);
    }
    if (!dsResult) {
        return dsResult;
    }

    const BEIRDataset& fullDataset = dsResult.value();
    BEIRDataset dataset;
    dataset.name = fullDataset.name;
    dataset.basePath = fullDataset.basePath;

    const int maxDocs =
        maxDocsOpt.has_value() ? *maxDocsOpt : static_cast<int>(fullDataset.documents.size());
    const int maxQueries =
        maxQueriesOpt.has_value() ? *maxQueriesOpt : static_cast<int>(fullDataset.queries.size());

    std::set<std::string> qrelDocIds;
    for (const auto& [queryId, docScore] : fullDataset.qrels) {
        (void)queryId;
        qrelDocIds.insert(docScore.docId);
    }
    spdlog::info("BEIR dataset has {} documents referenced by qrels", qrelDocIds.size());

    std::set<std::string> includedDocIds;
    for (const auto& docId : qrelDocIds) {
        if (static_cast<int>(includedDocIds.size()) >= maxDocs) {
            break;
        }
        if (fullDataset.documents.count(docId) > 0) {
            dataset.documents[docId] = fullDataset.documents.at(docId);
            includedDocIds.insert(docId);
        }
    }
    spdlog::info("Included {} qrel-referenced documents", includedDocIds.size());

    for (const auto& [id, doc] : fullDataset.documents) {
        if (static_cast<int>(includedDocIds.size()) >= maxDocs) {
            break;
        }
        if (includedDocIds.count(id) == 0) {
            dataset.documents[id] = doc;
            includedDocIds.insert(id);
        }
    }

    int queryCount = 0;
    for (const auto& [qid, query] : fullDataset.queries) {
        if (queryCount >= maxQueries) {
            break;
        }
        auto range = fullDataset.qrels.equal_range(qid);
        bool hasRelevantDoc = false;
        for (auto it = range.first; it != range.second; ++it) {
            if (includedDocIds.count(it->second.docId) > 0) {
                hasRelevantDoc = true;
                break;
            }
        }
        if (!hasRelevantDoc) {
            continue;
        }

        dataset.queries[qid] = query;
        for (auto it = range.first; it != range.second; ++it) {
            if (includedDocIds.count(it->second.docId) > 0) {
                dataset.qrels.emplace(qid, it->second);
            }
        }
        queryCount++;
    }

    for (const auto& entity : fullDataset.kgEntities) {
        if (includedDocIds.contains(entity.docId)) {
            dataset.kgEntities.push_back(entity);
        }
    }

    spdlog::debug(
        "Limited BEIR dataset to {} docs, {} queries, {} qrels, {} kg entities (from {} docs, {} "
        "queries)",
        dataset.documents.size(), dataset.queries.size(), dataset.qrels.size(),
        dataset.kgEntities.size(), fullDataset.documents.size(), fullDataset.queries.size());

    return dataset;
}

using yams::test::DaemonHarness;

struct QueryDiagnosticsSummary {
    std::uint64_t queryCount = 0;
    std::uint64_t queryWithResultsCount = 0;
    std::uint64_t queryWithoutResultsCount = 0;
    std::uint64_t queryWithoutRelevantHitCount = 0;
    std::uint64_t queryWithRelevantInPreFusionCount = 0;
    std::uint64_t queryWithRelevantInPostFusionCount = 0;
    std::uint64_t queryWithRelevantInGraphlessPostFusionCount = 0;
    std::uint64_t queryWithRelevantInFinalWindowCount = 0;
    std::uint64_t queryWithGraphAddedRelevantPostFusionCount = 0;
    std::uint64_t queryWithGraphDisplacedRelevantPostFusionCount = 0;
    std::uint64_t queryWithTopologyAddedRelevantPostFusionCount = 0;
    std::uint64_t queryWithTopologyAddedRelevantFusionDroppedCount = 0;
    std::uint64_t queryWithTopKDuplicateCount = 0;
    std::uint64_t degradedQueryCount = 0;
    std::uint64_t traceEnabledQueryCount = 0;
    std::uint64_t graphRerankAppliedQueryCount = 0;
    std::uint64_t compressedAnnEnabledQueryCount = 0;
    std::uint64_t compressedAnnAppliedQueryCount = 0;
    std::uint64_t semanticRescueNonZeroQueryCount = 0;
    std::uint64_t missMissingPreFusionCount = 0;
    std::uint64_t missFusionCutoffCount = 0;
    std::uint64_t missRerankWindowDropCount = 0;
    std::uint64_t missTopKDropCount = 0;
    std::vector<double> semanticRescueRateSamples;
    std::vector<double> semanticRescueFinalCountSamples;
    std::vector<double> semanticRescueTargetSamples;
    std::vector<double> compressedAnnResultCountSamples;
    std::unordered_map<std::string, std::uint64_t> compressedAnnSkipReasonCounts;
    std::vector<double> fusionPreFusionUniqueCountSamples;
    std::vector<double> fusionPostFusionCountSamples;
    std::vector<double> fusionDroppedCountSamples;
    std::vector<double> fusionDroppedRateSamples;
    std::vector<double> anchoredPreFusionCountSamples;
    std::vector<double> anchoredFusionDroppedCountSamples;
    std::vector<double> anchoredFusionDroppedRateSamples;
    std::vector<double> topTextPreFusionCountSamples;
    std::vector<double> topTextFusionDroppedCountSamples;
    std::vector<double> topTextFusionDroppedRateSamples;
    std::vector<double> vectorOnlyDocsSamples;
    std::vector<double> vectorOnlyBelowThresholdSamples;
    std::vector<double> vectorOnlyAboveThresholdSamples;
    std::vector<double> vectorOnlyNearMissEligibleSamples;
    std::uint64_t adaptiveFusionEnabledQueryCount = 0;
    std::vector<double> strongVectorOnlyDocsSamples;
    std::vector<double> strongVectorOnlyScoreEligibleDocsSamples;
    std::vector<double> strongVectorOnlyRankEligibleDocsSamples;
    std::vector<double> graphAddedPostFusionSamples;
    std::vector<double> graphDisplacedPostFusionSamples;
    std::vector<double> topologyRoutedDocsSamples;
    std::vector<double> topologyRouteBestScoreSamples;
    std::vector<double> topologyRouteMeanAcceptedScoreSamples;
    std::vector<double> topologyRouteAcceptedCountSamples;
    std::vector<double> topologySeedCountSamples;
    std::vector<double> topologySeedCoverageCountSamples;
    std::vector<double> topologyCoreCandidateCoverageSamples;
    std::vector<double> topologyAddedCandidatesSamples;
    std::vector<double> topologyDuplicateCandidatesSamples;
    std::vector<double> topologyStaleCandidatesSamples;
    std::vector<double> graphCommunitySupportedDocsSamples;
    std::vector<double> graphCommunityEdgeCountSamples;
    std::vector<double> graphCommunityLargestSizeSamples;
    std::vector<double> graphCommunitySignalMassSamples;
    std::vector<double> graphCommunityBoostedDocsSamples;
    std::vector<double> graphCommunityWeightSamples;
    std::vector<double> multiVectorGeneratedPhraseSamples;
    std::vector<double> multiVectorRawHitSamples;
    std::vector<double> multiVectorAddedNewSamples;
    std::vector<double> multiVectorReplacedBaseSamples;
    std::vector<double> subPhraseGeneratedSamples;
    std::vector<double> subPhraseClauseSamples;
    std::vector<double> subPhraseFtsHitSamples;
    std::vector<double> subPhraseFtsAddedSamples;
    std::vector<double> aggressiveFtsClauseSamples;
    std::vector<double> aggressiveFtsHitSamples;
    std::vector<double> aggressiveFtsAddedSamples;
    std::unordered_map<std::string, std::vector<double>> timingSamplesMs;
    std::unordered_map<std::string, std::uint64_t> stageEnabledCount;
    std::unordered_map<std::string, std::uint64_t> stageAttemptedCount;
    std::unordered_map<std::string, std::uint64_t> stageContributedCount;
    std::unordered_map<std::string, std::uint64_t> stageSkippedCount;
    std::unordered_map<std::string, std::uint64_t> stageRelevantPresenceCount;
    std::unordered_map<std::string, std::vector<std::string>> stageSkipReasons;
    std::unordered_map<std::string, std::vector<double>> fusionSourceScoreMassSamples;
    std::unordered_map<std::string, std::vector<double>> fusionSourceFinalDocSamples;
    std::unordered_map<std::string, std::vector<double>> stageUniqueDocCountSamples;
    std::unordered_map<std::string, std::vector<double>> stageRelevantDocCountSamples;
    std::map<std::string, StageMetricAccumulator> stageRetrievalMetrics;
    std::unordered_map<std::string, std::vector<double>> tunerSignalSamples;
    std::unordered_map<std::string, std::uint64_t> tunerDecisionCounts;
    std::unordered_map<std::string, std::uint64_t> zoomLevelCounts;
};

static const std::vector<std::string>& trackedTimingKeys() {
    static const std::vector<std::string> kKeys = {
        "latency",
        "embedding",
        "concepts",
        "text",
        "vector",
        "entity_vector",
        "kg",
        "path",
        "tag",
        "metadata",
        "multi_vector",
        "graph_rerank",
        "topology_weak_query",
        "topology_load",
        "topology_validate",
        "topology_request_prep",
        "topology_route",
        "topology_cluster_lookup",
        "topology_doc_lookup",
        "topology_candidate_insert",
    };
    return kKeys;
}

static std::string timingStatKey(const std::string& name) {
    return std::string("timing_") + name + "_ms";
}

static std::unordered_set<std::string> splitTabSet(const std::string& value) {
    std::unordered_set<std::string> out;
    if (value.empty()) {
        return out;
    }
    size_t start = 0;
    while (start <= value.size()) {
        const size_t end = value.find('\t', start);
        const size_t len = (end == std::string::npos) ? (value.size() - start) : (end - start);
        if (len > 0) {
            out.insert(value.substr(start, len));
        }
        if (end == std::string::npos) {
            break;
        }
        start = end + 1;
    }
    return out;
}

static std::vector<std::string> splitTabList(const std::string& value, size_t limit) {
    std::vector<std::string> out;
    if (value.empty() || limit == 0) {
        return out;
    }

    size_t start = 0;
    while (start <= value.size() && out.size() < limit) {
        const size_t end = value.find('\t', start);
        const size_t len = (end == std::string::npos) ? (value.size() - start) : (end - start);
        if (len > 0) {
            out.push_back(value.substr(start, len));
        }
        if (end == std::string::npos) {
            break;
        }
        start = end + 1;
    }
    return out;
}

static std::optional<size_t> findRankInTabList(const std::string& value,
                                               const std::string& needle) {
    if (value.empty() || needle.empty()) {
        return std::nullopt;
    }

    size_t start = 0;
    size_t rank = 0;
    while (start <= value.size()) {
        const size_t end = value.find('\t', start);
        const size_t len = (end == std::string::npos) ? (value.size() - start) : (end - start);
        if (len > 0) {
            ++rank;
            if (value.compare(start, len, needle) == 0 && len == needle.size()) {
                return rank;
            }
        }
        if (end == std::string::npos) {
            break;
        }
        start = end + 1;
    }
    return std::nullopt;
}

static json buildRelevantDecisionTrace(const std::vector<std::string>& relevantDocIds,
                                       const std::vector<std::string>& returnedDocIds,
                                       const std::map<std::string, std::string>& searchStats) {
    const std::string preFusionDocIds = searchStats.contains("trace_pre_fusion_doc_ids")
                                            ? searchStats.at("trace_pre_fusion_doc_ids")
                                            : "";
    const std::string postFusionDocIds = searchStats.contains("trace_post_fusion_doc_ids")
                                             ? searchStats.at("trace_post_fusion_doc_ids")
                                             : "";
    const std::string graphlessPostFusionDocIds =
        searchStats.contains("trace_graphless_post_fusion_doc_ids")
            ? searchStats.at("trace_graphless_post_fusion_doc_ids")
            : "";
    const std::string finalWindowDocIds =
        searchStats.contains("trace_final_doc_ids") ? searchStats.at("trace_final_doc_ids") : "";

    const auto preSet = splitTabSet(searchStats.contains("trace_pre_fusion_doc_ids")
                                        ? searchStats.at("trace_pre_fusion_doc_ids")
                                        : "");
    const auto postSet = splitTabSet(searchStats.contains("trace_post_fusion_doc_ids")
                                         ? searchStats.at("trace_post_fusion_doc_ids")
                                         : "");
    const auto graphlessPostSet =
        splitTabSet(searchStats.contains("trace_graphless_post_fusion_doc_ids")
                        ? searchStats.at("trace_graphless_post_fusion_doc_ids")
                        : "");
    const auto finalWindowSet = splitTabSet(
        searchStats.contains("trace_final_doc_ids") ? searchStats.at("trace_final_doc_ids") : "");
    std::string topologyAddedIds;
    for (const std::string_view key : {
             std::string_view{"topology_candidate_rescue_added_candidate_doc_ids"},
             std::string_view{"topology_candidate_rescue_added_candidate_hashes"},
             std::string_view{"topology_weak_query_added_candidate_doc_ids"},
             std::string_view{"topology_weak_query_added_candidate_hashes"},
         }) {
        if (const auto it = searchStats.find(std::string(key));
            it != searchStats.end() && !it->second.empty()) {
            topologyAddedIds = it->second;
            break;
        }
    }
    const auto topologyAddedSet = splitTabSet(topologyAddedIds);
    const auto topologyNovelSet =
        splitTabSet(searchStats.contains("topology_candidate_rescue_novel_candidate_doc_ids")
                        ? searchStats.at("topology_candidate_rescue_novel_candidate_doc_ids")
                        : "");
    const auto topologyEvidenceRescueSet =
        splitTabSet(searchStats.contains("topology_candidate_rescue_evidence_rescue_doc_ids")
                        ? searchStats.at("topology_candidate_rescue_evidence_rescue_doc_ids")
                        : "");
    const std::unordered_set<std::string> returnedTopKSet(returnedDocIds.begin(),
                                                          returnedDocIds.end());

    json fusionTop = json::array();
    if (auto it = searchStats.find("trace_fusion_top_json"); it != searchStats.end()) {
        try {
            fusionTop = json::parse(it->second);
        } catch (...) {
        }
    }
    json finalTop = json::array();
    if (auto it = searchStats.find("trace_final_top_json"); it != searchStats.end()) {
        try {
            finalTop = json::parse(it->second);
        } catch (...) {
        }
    }
    json componentHits = json::object();
    if (auto it = searchStats.find("trace_component_hits_json"); it != searchStats.end()) {
        try {
            componentHits = json::parse(it->second);
        } catch (...) {
        }
    }
    json stageSummary = json::object();
    if (auto it = searchStats.find("trace_stage_summary_json"); it != searchStats.end()) {
        try {
            stageSummary = json::parse(it->second);
        } catch (...) {
        }
    }
    const auto findDoc = [](const json& docs, const std::string& docId) -> json {
        if (!docs.is_array()) {
            return json();
        }
        for (const auto& item : docs) {
            if (item.is_object() && item.value("doc_id", "") == docId) {
                return item;
            }
        }
        return json();
    };

    const auto findComponentHit = [](const json& componentHitsJson,
                                     const std::string& docId) -> json {
        if (!componentHitsJson.is_object()) {
            return json::array();
        }

        json matches = json::array();
        for (const auto& [component, details] : componentHitsJson.items()) {
            if (!details.is_object()) {
                continue;
            }
            const auto hitsIt = details.find("top_hits");
            if (hitsIt == details.end() || !hitsIt->is_array()) {
                continue;
            }
            for (const auto& hit : *hitsIt) {
                if (!hit.is_object() || hit.value("doc_id", "") != docId) {
                    continue;
                }
                json entry = hit;
                entry["component"] = component;
                matches.push_back(std::move(entry));
                break;
            }
        }
        return matches;
    };

    json relevant = json::array();
    bool anyPre = false;
    bool anyPost = false;
    bool anyGraphlessPost = false;
    bool anyFinalWindow = false;
    bool anyReturnedTopK = false;
    json graphAddedRelevant = json::array();
    json graphDisplacedRelevant = json::array();
    json topologyAddedRelevantPostFusion = json::array();
    json topologyAddedRelevantDroppedByFusion = json::array();
    json stageRelevantPresence = json::object();

    if (stageSummary.is_object()) {
        for (const auto& [stageName, stageData] : stageSummary.items()) {
            if (!stageData.is_object()) {
                continue;
            }
            bool anyRelevant = false;
            std::size_t relevantDocCount = 0;
            if (auto idsIt = stageData.find("unique_doc_ids");
                idsIt != stageData.end() && idsIt->is_array()) {
                for (const auto& id : *idsIt) {
                    if (!id.is_string()) {
                        continue;
                    }
                    if (std::find(relevantDocIds.begin(), relevantDocIds.end(),
                                  id.get<std::string>()) != relevantDocIds.end()) {
                        anyRelevant = true;
                        ++relevantDocCount;
                    }
                }
            }
            stageRelevantPresence[stageName] = {
                {"enabled", stageData.value("enabled", false)},
                {"attempted", stageData.value("attempted", false)},
                {"contributed", stageData.value("contributed", false)},
                {"unique_doc_count", stageData.value("unique_doc_count", 0UL)},
                {"any_relevant", anyRelevant},
                {"relevant_doc_count", relevantDocCount},
            };
        }
    }

    for (const auto& docId : relevantDocIds) {
        const bool inPre = preSet.contains(docId);
        const bool inPost = postSet.contains(docId);
        const bool inGraphlessPost = graphlessPostSet.contains(docId);
        const bool inFinalWindow = finalWindowSet.contains(docId);
        const bool inReturnedTopK = returnedTopKSet.contains(docId);
        anyPre = anyPre || inPre;
        anyPost = anyPost || inPost;
        anyGraphlessPost = anyGraphlessPost || inGraphlessPost;
        anyFinalWindow = anyFinalWindow || inFinalWindow;
        anyReturnedTopK = anyReturnedTopK || inReturnedTopK;

        if (inPost && !inGraphlessPost) {
            graphAddedRelevant.push_back(docId);
        }
        if (inGraphlessPost && !inPost) {
            graphDisplacedRelevant.push_back(docId);
        }
        const bool topologyAddedCandidate = topologyAddedSet.contains(docId);
        const bool topologyNovelCandidate = topologyNovelSet.contains(docId);
        const bool topologyEvidenceRescue = topologyEvidenceRescueSet.contains(docId);
        if (topologyAddedCandidate && inPost) {
            topologyAddedRelevantPostFusion.push_back(docId);
        }
        if (topologyAddedCandidate && !inPost) {
            topologyAddedRelevantDroppedByFusion.push_back(docId);
        }
        json componentSources = json::array();
        if (componentHits.is_object()) {
            for (const auto& [component, details] : componentHits.items()) {
                if (!details.is_object()) {
                    continue;
                }
                const auto topIdsIt = details.find("unique_top_doc_ids");
                if (topIdsIt == details.end() || !topIdsIt->is_array()) {
                    continue;
                }
                for (const auto& id : *topIdsIt) {
                    if (id.is_string() && id.get<std::string>() == docId) {
                        componentSources.push_back(component);
                        break;
                    }
                }
            }
        }

        json entry = {
            {"doc_id", docId},
            {"in_pre_fusion", inPre},
            {"in_post_fusion", inPost},
            {"in_graphless_post_fusion", inGraphlessPost},
            {"in_final_window", inFinalWindow},
            {"in_returned_topk", inReturnedTopK},
            {"topology_added_candidate", topologyAddedCandidate},
            {"topology_novel_candidate", topologyNovelCandidate},
            {"topology_evidence_rescue", topologyEvidenceRescue},
            {"component_top_hits", componentSources},
            {"component_top_hit_details", findComponentHit(componentHits, docId)},
        };

        const auto assignOptionalRank = [&entry](std::string_view key,
                                                 const std::optional<size_t>& rank) {
            if (rank.has_value()) {
                entry[std::string(key)] = *rank;
            } else {
                entry[std::string(key)] = nullptr;
            }
        };
        assignOptionalRank("pre_fusion_rank", findRankInTabList(preFusionDocIds, docId));
        assignOptionalRank("post_fusion_rank", findRankInTabList(postFusionDocIds, docId));
        assignOptionalRank("graphless_post_fusion_rank",
                           findRankInTabList(graphlessPostFusionDocIds, docId));
        assignOptionalRank("final_window_rank", findRankInTabList(finalWindowDocIds, docId));

        if (auto match = findDoc(fusionTop, docId); !match.is_null()) {
            entry["post_fusion"] = match;
        }
        if (auto match = findDoc(finalTop, docId); !match.is_null()) {
            entry["final_window"] = match;
        }
        relevant.push_back(std::move(entry));
    }

    std::string missStage = "hit";
    if (!anyReturnedTopK) {
        if (!anyPre) {
            missStage = "missing_pre_fusion";
        } else if (!anyPost) {
            missStage = "dropped_before_fusion_window";
        } else if (!anyFinalWindow) {
            missStage = "dropped_during_rerank_window";
        } else {
            missStage = "dropped_before_topk";
        }
    }

    return {
        {"trace_enabled",
         searchStats.contains("trace_enabled") && searchStats.at("trace_enabled") == "1"},
        {"graph_rerank_applied", searchStats.contains("trace_graph_rerank_applied") &&
                                     searchStats.at("trace_graph_rerank_applied") == "1"},
        {"cross_rerank_applied", searchStats.contains("trace_cross_rerank_applied") &&
                                     searchStats.at("trace_cross_rerank_applied") == "1"},
        {"any_relevant_in_pre_fusion", anyPre},
        {"any_relevant_in_post_fusion", anyPost},
        {"any_relevant_in_graphless_post_fusion", anyGraphlessPost},
        {"any_relevant_in_final_window", anyFinalWindow},
        {"any_relevant_in_returned_topk", anyReturnedTopK},
        {"graph_added_relevant_post_fusion_count", graphAddedRelevant.size()},
        {"graph_displaced_relevant_post_fusion_count", graphDisplacedRelevant.size()},
        {"graph_added_relevant_post_fusion_doc_ids", graphAddedRelevant},
        {"graph_displaced_relevant_post_fusion_doc_ids", graphDisplacedRelevant},
        {"topology_added_relevant_post_fusion_count", topologyAddedRelevantPostFusion.size()},
        {"topology_added_relevant_fusion_dropped_count",
         topologyAddedRelevantDroppedByFusion.size()},
        {"topology_added_relevant_post_fusion_doc_ids", topologyAddedRelevantPostFusion},
        {"topology_added_relevant_fusion_dropped_doc_ids", topologyAddedRelevantDroppedByFusion},
        {"stage_relevant_presence", stageRelevantPresence},
        {"miss_stage", missStage},
        {"relevant_docs", relevant},
    };
}

struct DebugLogEntry {
    std::string query;
    int queryIndex = -1;
    std::string searchType;
    std::vector<std::string> relevantDocIds;
    std::vector<std::string> relevantFiles;
    std::vector<std::string> returnedPaths;
    std::vector<std::string> returnedDocIds;
    std::vector<float> returnedScores;
    std::vector<int> returnedGrades;
    std::vector<std::string> diagnostics;
    std::uint64_t attempts = 0;
    bool usedStreaming = false;
    bool usedFuzzyFlag = false;
    bool usedLiteralFlag = false;
    bool usedFuzzyRetry = false;
    bool usedLiteralTextRetry = false;
    std::map<std::string, std::string> searchStats;
    json extraFields;
};

struct DebugRunContext {
    std::string runId;
    std::string candidate;
    std::string dataset;
    int corpusSize = 0;
    int numQueries = 0;
    int topK = 0;
    int traceTopN = 0;
    int traceComponentTopN = 0;
    bool stageTraceEnabled = false;
    std::string debugFile;
};

static std::ostream* g_debugOut = nullptr;
static std::unique_ptr<std::ofstream> g_debugFile;
static std::mutex g_debugMutex;
static std::optional<DebugRunContext> g_debugRunContext;

static std::optional<double> parseDoubleLoose(const std::string& value) {
    try {
        return std::stod(value);
    } catch (...) {
        return std::nullopt;
    }
}

static std::optional<double> parseDoubleStat(const std::map<std::string, std::string>& stats,
                                             const std::string& key) {
    if (auto it = stats.find(key); it != stats.end()) {
        return parseDoubleLoose(it->second);
    }
    return std::nullopt;
}

static std::optional<bool> parseBoolStat(const std::map<std::string, std::string>& stats,
                                         const std::string& key) {
    if (auto it = stats.find(key); it != stats.end()) {
        std::string normalized = it->second;
        std::transform(normalized.begin(), normalized.end(), normalized.begin(), [](char c) {
            return static_cast<char>(std::tolower(static_cast<unsigned char>(c)));
        });
        return normalized == "1" || normalized == "true" || normalized == "yes" ||
               normalized == "on";
    }
    return std::nullopt;
}

static std::optional<json> parseJsonStat(const std::map<std::string, std::string>& stats,
                                         const std::string& key) {
    if (auto it = stats.find(key); it != stats.end() && !it->second.empty()) {
        try {
            return json::parse(it->second);
        } catch (...) {
        }
    }
    return std::nullopt;
}

static double computePercentile(std::vector<double> samples, double percentile) {
    if (samples.empty()) {
        return 0.0;
    }

    percentile = std::clamp(percentile, 0.0, 1.0);
    std::sort(samples.begin(), samples.end());
    const double idx = percentile * static_cast<double>(samples.size() - 1);
    const auto lo = static_cast<std::size_t>(std::floor(idx));
    const auto hi = static_cast<std::size_t>(std::ceil(idx));
    if (lo == hi) {
        return samples[lo];
    }
    const double t = idx - static_cast<double>(lo);
    return samples[lo] * (1.0 - t) + samples[hi] * t;
}

static json summarizeSamples(const std::vector<double>& samples) {
    json out = {
        {"count", samples.size()},
        {"mean", 0.0},
        {"min", 0.0},
        {"p50", 0.0},
        {"p95", 0.0},
        {"max", 0.0},
    };

    if (samples.empty()) {
        return out;
    }

    const double sum = std::accumulate(samples.begin(), samples.end(), 0.0);
    out["mean"] = sum / static_cast<double>(samples.size());
    out["min"] = *std::min_element(samples.begin(), samples.end());
    out["p50"] = computePercentile(samples, 0.50);
    out["p95"] = computePercentile(samples, 0.95);
    out["max"] = *std::max_element(samples.begin(), samples.end());
    return out;
}

static void ingestQueryDiagnostics(QueryDiagnosticsSummary& summary,
                                   const std::map<std::string, std::string>& searchStats,
                                   const json& relevantDecisionTrace, bool degraded,
                                   bool hadResults, bool hadTopKDuplicate, int firstRelevantRank) {
    summary.queryCount++;
    if (hadResults) {
        summary.queryWithResultsCount++;
    } else {
        summary.queryWithoutResultsCount++;
    }
    if (firstRelevantRank < 0) {
        summary.queryWithoutRelevantHitCount++;
    }
    if (hadTopKDuplicate) {
        summary.queryWithTopKDuplicateCount++;
    }
    if (degraded) {
        summary.degradedQueryCount++;
    }

    if (relevantDecisionTrace.is_object()) {
        const bool anyPre = relevantDecisionTrace.value("any_relevant_in_pre_fusion", false);
        const bool anyPost = relevantDecisionTrace.value("any_relevant_in_post_fusion", false);
        const bool anyGraphlessPost =
            relevantDecisionTrace.value("any_relevant_in_graphless_post_fusion", false);
        const bool anyFinalWindow =
            relevantDecisionTrace.value("any_relevant_in_final_window", false);
        if (anyPre) {
            summary.queryWithRelevantInPreFusionCount++;
        }
        if (anyPost) {
            summary.queryWithRelevantInPostFusionCount++;
        }
        if (anyGraphlessPost) {
            summary.queryWithRelevantInGraphlessPostFusionCount++;
        }
        if (anyFinalWindow) {
            summary.queryWithRelevantInFinalWindowCount++;
        }
        if (relevantDecisionTrace.value("graph_added_relevant_post_fusion_count", 0) > 0) {
            summary.queryWithGraphAddedRelevantPostFusionCount++;
        }
        if (relevantDecisionTrace.value("graph_displaced_relevant_post_fusion_count", 0) > 0) {
            summary.queryWithGraphDisplacedRelevantPostFusionCount++;
        }
        if (relevantDecisionTrace.value("topology_added_relevant_post_fusion_count", 0) > 0) {
            summary.queryWithTopologyAddedRelevantPostFusionCount++;
        }
        if (relevantDecisionTrace.value("topology_added_relevant_fusion_dropped_count", 0) > 0) {
            summary.queryWithTopologyAddedRelevantFusionDroppedCount++;
        }
        if (firstRelevantRank < 0) {
            const std::string missStage = relevantDecisionTrace.value("miss_stage", "unknown");
            if (missStage == "missing_pre_fusion") {
                summary.missMissingPreFusionCount++;
            } else if (missStage == "dropped_before_fusion_window") {
                summary.missFusionCutoffCount++;
            } else if (missStage == "dropped_during_rerank_window") {
                summary.missRerankWindowDropCount++;
            } else if (missStage == "dropped_before_topk") {
                summary.missTopKDropCount++;
            }
        }
    }

    if (parseBoolStat(searchStats, "trace_enabled").value_or(false)) {
        summary.traceEnabledQueryCount++;
    }
    if (parseBoolStat(searchStats, "trace_graph_rerank_applied").value_or(false)) {
        summary.graphRerankAppliedQueryCount++;
    }
    if (auto it = searchStats.find("trace_zoom_level");
        it != searchStats.end() && !it->second.empty()) {
        summary.zoomLevelCounts[it->second]++;
    }
    bool compressedAnnEnabled =
        parseBoolStat(searchStats, "compressed_ann_enabled").value_or(false);
    bool compressedAnnApplied =
        parseBoolStat(searchStats, "compressed_ann_applied").value_or(false);
    std::optional<std::string> compressedAnnSkipReason;
    if (auto it = searchStats.find("compressed_ann_skip_reason");
        it != searchStats.end() && !it->second.empty()) {
        compressedAnnSkipReason = it->second;
    }
    if (auto stageSummary = parseJsonStat(searchStats, "trace_stage_summary_json");
        stageSummary && stageSummary->is_object()) {
        if (auto stageIt = stageSummary->find("compressed_ann");
            stageIt != stageSummary->end() && stageIt->is_object()) {
            compressedAnnEnabled = stageIt->value("enabled", compressedAnnEnabled);
            compressedAnnApplied = stageIt->value("contributed", compressedAnnApplied);
            if (stageIt->value("skipped", false)) {
                auto stageSkipReason = stageIt->value("skip_reason", std::string{});
                if (!stageSkipReason.empty()) {
                    compressedAnnSkipReason = stageSkipReason;
                }
            } else if (stageIt->value("attempted", false) &&
                       compressedAnnSkipReason == "adaptive_vector_skip") {
                compressedAnnSkipReason.reset();
            }
        }
    }

    if (compressedAnnEnabled) {
        summary.compressedAnnEnabledQueryCount++;
    }
    if (compressedAnnApplied) {
        summary.compressedAnnAppliedQueryCount++;
    }
    if (auto v = parseDoubleStat(searchStats, "compressed_ann_result_count")) {
        summary.compressedAnnResultCountSamples.push_back(*v);
    }
    if (compressedAnnSkipReason.has_value() && !compressedAnnSkipReason->empty()) {
        summary.compressedAnnSkipReasonCounts[*compressedAnnSkipReason]++;
    }
    if (auto v = parseDoubleStat(searchStats, "semantic_rescue_rate")) {
        summary.semanticRescueRateSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "semantic_rescue_final_count")) {
        summary.semanticRescueFinalCountSamples.push_back(*v);
        if (*v > 0.0) {
            summary.semanticRescueNonZeroQueryCount++;
        }
    }
    if (auto v = parseDoubleStat(searchStats, "semantic_rescue_target")) {
        summary.semanticRescueTargetSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "fusion_pre_fusion_unique_count")) {
        summary.fusionPreFusionUniqueCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "fusion_post_fusion_count")) {
        summary.fusionPostFusionCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "fusion_dropped_count")) {
        summary.fusionDroppedCountSamples.push_back(*v);
    } else if (auto v = parseDoubleStat(searchStats, "trace_fusion_dropped_count")) {
        summary.fusionDroppedCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "fusion_dropped_rate")) {
        summary.fusionDroppedRateSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_weak_query_routed_docs")) {
        summary.topologyRoutedDocsSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_route_best_score")) {
        summary.topologyRouteBestScoreSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_route_mean_accepted_score")) {
        summary.topologyRouteMeanAcceptedScoreSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_route_accepted_count")) {
        summary.topologyRouteAcceptedCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_seed_count")) {
        summary.topologySeedCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_seed_coverage_count")) {
        summary.topologySeedCoverageCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_core_candidate_coverage")) {
        summary.topologyCoreCandidateCoverageSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_weak_query_added_candidates")) {
        summary.topologyAddedCandidatesSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_weak_query_duplicate_candidates")) {
        summary.topologyDuplicateCandidatesSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "topology_weak_query_stale_candidates")) {
        summary.topologyStaleCandidatesSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "anchored_pre_fusion_count")) {
        summary.anchoredPreFusionCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "anchored_fusion_dropped_count")) {
        summary.anchoredFusionDroppedCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "anchored_fusion_dropped_rate")) {
        summary.anchoredFusionDroppedRateSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "top_text_pre_fusion_count")) {
        summary.topTextPreFusionCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "top_text_fusion_dropped_count")) {
        summary.topTextFusionDroppedCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "top_text_fusion_dropped_rate")) {
        summary.topTextFusionDroppedRateSamples.push_back(*v);
    }
    const bool hasDirectPreFusionStats = searchStats.find("vector_only_docs") != searchStats.end();
    if (auto v = parseDoubleStat(searchStats, "vector_only_docs")) {
        summary.vectorOnlyDocsSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "vector_only_below_threshold")) {
        summary.vectorOnlyBelowThresholdSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "vector_only_above_threshold")) {
        summary.vectorOnlyAboveThresholdSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "vector_only_near_miss_eligible")) {
        summary.vectorOnlyNearMissEligibleSamples.push_back(*v);
    }
    if (parseBoolStat(searchStats, "adaptive_fusion_enabled").value_or(false)) {
        summary.adaptiveFusionEnabledQueryCount++;
    }
    if (auto v = parseDoubleStat(searchStats, "multi_vector_generated_phrases")) {
        summary.multiVectorGeneratedPhraseSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "multi_vector_raw_hit_count")) {
        summary.multiVectorRawHitSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "multi_vector_added_new_count")) {
        summary.multiVectorAddedNewSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "multi_vector_replaced_base_count")) {
        summary.multiVectorReplacedBaseSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "subphrase_generated_count")) {
        summary.subPhraseGeneratedSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "subphrase_clause_count")) {
        summary.subPhraseClauseSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "subphrase_fts_hit_count")) {
        summary.subPhraseFtsHitSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "subphrase_fts_added_count")) {
        summary.subPhraseFtsAddedSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "aggressive_fts_clause_count")) {
        summary.aggressiveFtsClauseSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "aggressive_fts_hit_count")) {
        summary.aggressiveFtsHitSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "aggressive_fts_added_count")) {
        summary.aggressiveFtsAddedSamples.push_back(*v);
    }

    for (const auto& timingName : trackedTimingKeys()) {
        const auto key = timingStatKey(timingName);
        if (auto v = parseDoubleStat(searchStats, key)) {
            summary.timingSamplesMs[timingName].push_back(*v);
        }
    }

    auto prefusion = searchStats.find("trace_prefusion_signal_summary_json");
    if (prefusion != searchStats.end()) {
        try {
            auto parsed = json::parse(prefusion->second);
            if (parsed.is_object()) {
                if (!hasDirectPreFusionStats) {
                    if (auto it = parsed.find("vector_only_docs"); it != parsed.end()) {
                        if (it->is_number()) {
                            summary.vectorOnlyDocsSamples.push_back(it->get<double>());
                        }
                    }
                    if (auto it = parsed.find("vector_only_below_threshold"); it != parsed.end()) {
                        if (it->is_number()) {
                            summary.vectorOnlyBelowThresholdSamples.push_back(it->get<double>());
                        }
                    }
                    if (auto it = parsed.find("vector_only_above_threshold"); it != parsed.end()) {
                        if (it->is_number()) {
                            summary.vectorOnlyAboveThresholdSamples.push_back(it->get<double>());
                        }
                    }
                    if (auto it = parsed.find("vector_only_near_miss_eligible");
                        it != parsed.end()) {
                        if (it->is_number()) {
                            summary.vectorOnlyNearMissEligibleSamples.push_back(it->get<double>());
                        }
                    }
                }
                if (auto it = parsed.find("strong_vector_only_docs"); it != parsed.end()) {
                    if (it->is_number()) {
                        summary.strongVectorOnlyDocsSamples.push_back(it->get<double>());
                    }
                }
                if (auto it = parsed.find("strong_vector_only_score_eligible_docs");
                    it != parsed.end()) {
                    if (it->is_number()) {
                        summary.strongVectorOnlyScoreEligibleDocsSamples.push_back(
                            it->get<double>());
                    }
                }
                if (auto it = parsed.find("strong_vector_only_rank_eligible_docs");
                    it != parsed.end()) {
                    if (it->is_number()) {
                        summary.strongVectorOnlyRankEligibleDocsSamples.push_back(
                            it->get<double>());
                    }
                }
            }
        } catch (...) {
        }
    }

    auto graphDisplacement = searchStats.find("trace_graph_displacement_summary_json");
    if (graphDisplacement != searchStats.end()) {
        try {
            auto parsed = json::parse(graphDisplacement->second);
            if (parsed.is_object()) {
                if (auto it = parsed.find("graph_added_post_fusion_count");
                    it != parsed.end() && it->is_number()) {
                    summary.graphAddedPostFusionSamples.push_back(it->get<double>());
                }
                if (auto it = parsed.find("graph_displaced_post_fusion_count");
                    it != parsed.end() && it->is_number()) {
                    summary.graphDisplacedPostFusionSamples.push_back(it->get<double>());
                }
            }
        } catch (...) {
        }
    }

    if (auto v = parseDoubleStat(searchStats, "graph_community_supported_docs")) {
        summary.graphCommunitySupportedDocsSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "graph_community_edge_count")) {
        summary.graphCommunityEdgeCountSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "graph_community_largest_size")) {
        summary.graphCommunityLargestSizeSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "graph_community_signal_mass")) {
        summary.graphCommunitySignalMassSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "graph_community_boosted_docs")) {
        summary.graphCommunityBoostedDocsSamples.push_back(*v);
    }
    if (auto v = parseDoubleStat(searchStats, "graph_community_weight")) {
        summary.graphCommunityWeightSamples.push_back(*v);
    }

    if (auto stageSummary = searchStats.find("trace_stage_summary_json");
        stageSummary != searchStats.end()) {
        try {
            auto parsed = json::parse(stageSummary->second);
            if (parsed.is_object()) {
                for (const auto& [stageName, stageData] : parsed.items()) {
                    if (!stageData.is_object()) {
                        continue;
                    }
                    if (stageData.value("enabled", false)) {
                        summary.stageEnabledCount[stageName]++;
                    }
                    if (stageData.value("attempted", false)) {
                        summary.stageAttemptedCount[stageName]++;
                    }
                    if (stageData.value("contributed", false)) {
                        summary.stageContributedCount[stageName]++;
                    }
                    if (stageData.value("skipped", false)) {
                        summary.stageSkippedCount[stageName]++;
                        auto reason = stageData.value("skip_reason", std::string{});
                        if (!reason.empty()) {
                            summary.stageSkipReasons[stageName].push_back(reason);
                        }
                    }
                    if (auto it = stageData.find("unique_doc_count");
                        it != stageData.end() && it->is_number()) {
                        summary.stageUniqueDocCountSamples[stageName].push_back(it->get<double>());
                    }
                }
            }
        } catch (...) {
        }
    }

    if (auto stagePresence = relevantDecisionTrace.find("stage_relevant_presence");
        relevantDecisionTrace.is_object() && stagePresence != relevantDecisionTrace.end() &&
        stagePresence->is_object()) {
        for (const auto& [stageName, stageData] : stagePresence->items()) {
            if (!stageData.is_object()) {
                continue;
            }
            if (stageData.value("any_relevant", false)) {
                summary.stageRelevantPresenceCount[stageName]++;
            }
            if (auto it = stageData.find("relevant_doc_count");
                it != stageData.end() && it->is_number()) {
                summary.stageRelevantDocCountSamples[stageName].push_back(it->get<double>());
            }
        }
    }

    if (auto fusionSummary = searchStats.find("trace_fusion_source_summary_json");
        fusionSummary != searchStats.end()) {
        try {
            auto parsed = json::parse(fusionSummary->second);
            if (parsed.is_object()) {
                for (const auto& [sourceName, sourceData] : parsed.items()) {
                    if (!sourceData.is_object()) {
                        continue;
                    }
                    if (auto it = sourceData.find("final_score_mass");
                        it != sourceData.end() && it->is_number()) {
                        summary.fusionSourceScoreMassSamples[sourceName].push_back(
                            it->get<double>());
                    }
                    if (auto it = sourceData.find("final_top_doc_count");
                        it != sourceData.end() && it->is_number()) {
                        summary.fusionSourceFinalDocSamples[sourceName].push_back(
                            it->get<double>());
                    }
                }
            }
        } catch (...) {
        }
    }

    if (auto tunerSummary = searchStats.find("tuner_adjustments_json");
        tunerSummary != searchStats.end()) {
        try {
            auto parsed = json::parse(tunerSummary->second);
            if (parsed.is_object()) {
                if (auto decision = parsed.find("last_decision");
                    decision != parsed.end() && decision->is_string()) {
                    summary.tunerDecisionCounts[decision->get<std::string>()]++;
                }
                static const std::vector<std::string> kKeys = {
                    "ewma_latency_ms",
                    "ewma_kg_latency_share",
                    "ewma_kg_utility",
                    "ewma_kg_score_mass_share",
                    "ewma_kg_final_doc_share",
                    "ewma_kg_contribution_rate",
                    "ewma_graph_rerank_latency_ms",
                    "ewma_graph_rerank_skip_rate",
                    "ewma_graph_rerank_contribution_rate",
                    "ewma_fusion_dropped_rate",
                    "ewma_anchored_fusion_dropped_rate",
                    "ewma_top_text_fusion_dropped_rate",
                    "ewma_vector_only_share",
                    "ewma_semantic_rescue_rate",
                };
                for (const auto& key : kKeys) {
                    if (auto it = parsed.find(key); it != parsed.end() && it->is_number()) {
                        summary.tunerSignalSamples[key].push_back(it->get<double>());
                    }
                }
            }
        } catch (...) {
        }
    }

    if (auto runtimeConfig = searchStats.find("tuner_runtime_config_json");
        runtimeConfig != searchStats.end()) {
        try {
            auto parsed = json::parse(runtimeConfig->second);
            if (parsed.is_object()) {
                static const std::vector<std::string> kWeightKeys = {
                    "text_weight",          "simeon_text_weight", "vector_weight",
                    "entity_vector_weight", "path_tree_weight",   "kg_weight",
                    "tag_weight",           "metadata_weight",
                };
                for (const auto& key : kWeightKeys) {
                    if (auto it = parsed.find(key); it != parsed.end() && it->is_number()) {
                        summary.tunerSignalSamples[key].push_back(it->get<double>());
                    }
                }
            }
        } catch (...) {
        }
    }
}

static json queryDiagnosticsToJson(const QueryDiagnosticsSummary& summary) {
    const double queryCount = static_cast<double>(std::max<std::uint64_t>(summary.queryCount, 1));

    json out = {
        {"query_count", summary.queryCount},
        {"query_with_results_count", summary.queryWithResultsCount},
        {"query_without_results_count", summary.queryWithoutResultsCount},
        {"query_without_relevant_hit_count", summary.queryWithoutRelevantHitCount},
        {"query_with_relevant_in_pre_fusion_count", summary.queryWithRelevantInPreFusionCount},
        {"query_with_relevant_in_post_fusion_count", summary.queryWithRelevantInPostFusionCount},
        {"query_with_relevant_in_graphless_post_fusion_count",
         summary.queryWithRelevantInGraphlessPostFusionCount},
        {"query_with_relevant_in_final_window_count", summary.queryWithRelevantInFinalWindowCount},
        {"query_with_graph_added_relevant_post_fusion_count",
         summary.queryWithGraphAddedRelevantPostFusionCount},
        {"query_with_graph_displaced_relevant_post_fusion_count",
         summary.queryWithGraphDisplacedRelevantPostFusionCount},
        {"query_with_topology_added_relevant_post_fusion_count",
         summary.queryWithTopologyAddedRelevantPostFusionCount},
        {"query_with_topology_added_relevant_fusion_dropped_count",
         summary.queryWithTopologyAddedRelevantFusionDroppedCount},
        {"query_with_topk_duplicate_count", summary.queryWithTopKDuplicateCount},
        {"degraded_query_count", summary.degradedQueryCount},
        {"trace_enabled_query_count", summary.traceEnabledQueryCount},
        {"graph_rerank_applied_query_count", summary.graphRerankAppliedQueryCount},
        {"compressed_ann_enabled_query_count", summary.compressedAnnEnabledQueryCount},
        {"compressed_ann_applied_query_count", summary.compressedAnnAppliedQueryCount},
        {"semantic_rescue_nonzero_query_count", summary.semanticRescueNonZeroQueryCount},
        {"miss_missing_pre_fusion_count", summary.missMissingPreFusionCount},
        {"miss_fusion_cutoff_count", summary.missFusionCutoffCount},
        {"miss_rerank_window_drop_count", summary.missRerankWindowDropCount},
        {"miss_topk_drop_count", summary.missTopKDropCount},
        {"query_with_results_rate",
         static_cast<double>(summary.queryWithResultsCount) / queryCount},
        {"query_without_relevant_hit_rate",
         static_cast<double>(summary.queryWithoutRelevantHitCount) / queryCount},
        {"query_with_relevant_in_pre_fusion_rate",
         static_cast<double>(summary.queryWithRelevantInPreFusionCount) / queryCount},
        {"query_with_relevant_in_post_fusion_rate",
         static_cast<double>(summary.queryWithRelevantInPostFusionCount) / queryCount},
        {"query_with_relevant_in_graphless_post_fusion_rate",
         static_cast<double>(summary.queryWithRelevantInGraphlessPostFusionCount) / queryCount},
        {"query_with_relevant_in_final_window_rate",
         static_cast<double>(summary.queryWithRelevantInFinalWindowCount) / queryCount},
        {"query_with_graph_added_relevant_post_fusion_rate",
         static_cast<double>(summary.queryWithGraphAddedRelevantPostFusionCount) / queryCount},
        {"query_with_graph_displaced_relevant_post_fusion_rate",
         static_cast<double>(summary.queryWithGraphDisplacedRelevantPostFusionCount) / queryCount},
        {"query_with_topology_added_relevant_post_fusion_rate",
         static_cast<double>(summary.queryWithTopologyAddedRelevantPostFusionCount) / queryCount},
        {"query_with_topology_added_relevant_fusion_dropped_rate",
         static_cast<double>(summary.queryWithTopologyAddedRelevantFusionDroppedCount) /
             queryCount},
        {"query_with_topk_duplicate_rate",
         static_cast<double>(summary.queryWithTopKDuplicateCount) / queryCount},
        {"degraded_query_rate", static_cast<double>(summary.degradedQueryCount) / queryCount},
        {"trace_coverage", static_cast<double>(summary.traceEnabledQueryCount) / queryCount},
        {"graph_rerank_apply_rate",
         static_cast<double>(summary.graphRerankAppliedQueryCount) / queryCount},
        {"compressed_ann_enabled_rate",
         static_cast<double>(summary.compressedAnnEnabledQueryCount) / queryCount},
        {"compressed_ann_apply_rate",
         static_cast<double>(summary.compressedAnnAppliedQueryCount) / queryCount},
        {"adaptive_fusion_enabled_query_count", summary.adaptiveFusionEnabledQueryCount},
        {"adaptive_fusion_enabled_rate",
         static_cast<double>(summary.adaptiveFusionEnabledQueryCount) / queryCount},
        {"semantic_rescue_nonzero_rate",
         static_cast<double>(summary.semanticRescueNonZeroQueryCount) / queryCount},
        {"miss_missing_pre_fusion_rate",
         static_cast<double>(summary.missMissingPreFusionCount) / queryCount},
        {"miss_fusion_cutoff_rate",
         static_cast<double>(summary.missFusionCutoffCount) / queryCount},
        {"miss_rerank_window_drop_rate",
         static_cast<double>(summary.missRerankWindowDropCount) / queryCount},
        {"miss_topk_drop_rate", static_cast<double>(summary.missTopKDropCount) / queryCount},
        {"compressed_ann_result_count", summarizeSamples(summary.compressedAnnResultCountSamples)},
        {"compressed_ann_skip_reasons", summary.compressedAnnSkipReasonCounts},
        {"stage_metrics", yams::bench::stageRetrievalMetricsToJson(summary.stageRetrievalMetrics)},
        {"semantic_rescue_rate", summarizeSamples(summary.semanticRescueRateSamples)},
        {"semantic_rescue_final_count", summarizeSamples(summary.semanticRescueFinalCountSamples)},
        {"semantic_rescue_target", summarizeSamples(summary.semanticRescueTargetSamples)},
        {"fusion_pre_fusion_unique_count",
         summarizeSamples(summary.fusionPreFusionUniqueCountSamples)},
        {"fusion_post_fusion_count", summarizeSamples(summary.fusionPostFusionCountSamples)},
        {"fusion_dropped_count", summarizeSamples(summary.fusionDroppedCountSamples)},
        {"fusion_dropped_rate", summarizeSamples(summary.fusionDroppedRateSamples)},
        {"anchored_pre_fusion_count", summarizeSamples(summary.anchoredPreFusionCountSamples)},
        {"anchored_fusion_dropped_count",
         summarizeSamples(summary.anchoredFusionDroppedCountSamples)},
        {"anchored_fusion_dropped_rate",
         summarizeSamples(summary.anchoredFusionDroppedRateSamples)},
        {"top_text_pre_fusion_count", summarizeSamples(summary.topTextPreFusionCountSamples)},
        {"top_text_fusion_dropped_count",
         summarizeSamples(summary.topTextFusionDroppedCountSamples)},
        {"top_text_fusion_dropped_rate", summarizeSamples(summary.topTextFusionDroppedRateSamples)},
        {"vector_only_docs", summarizeSamples(summary.vectorOnlyDocsSamples)},
        {"vector_only_below_threshold", summarizeSamples(summary.vectorOnlyBelowThresholdSamples)},
        {"vector_only_above_threshold", summarizeSamples(summary.vectorOnlyAboveThresholdSamples)},
        {"vector_only_near_miss_eligible",
         summarizeSamples(summary.vectorOnlyNearMissEligibleSamples)},
        {"strong_vector_only_docs", summarizeSamples(summary.strongVectorOnlyDocsSamples)},
        {"strong_vector_only_score_eligible_docs",
         summarizeSamples(summary.strongVectorOnlyScoreEligibleDocsSamples)},
        {"strong_vector_only_rank_eligible_docs",
         summarizeSamples(summary.strongVectorOnlyRankEligibleDocsSamples)},
        {"graph_added_post_fusion_count", summarizeSamples(summary.graphAddedPostFusionSamples)},
        {"graph_displaced_post_fusion_count",
         summarizeSamples(summary.graphDisplacedPostFusionSamples)},
        {"topology_weak_query_routed_docs", summarizeSamples(summary.topologyRoutedDocsSamples)},
        {"topology_route_best_score", summarizeSamples(summary.topologyRouteBestScoreSamples)},
        {"topology_route_mean_accepted_score",
         summarizeSamples(summary.topologyRouteMeanAcceptedScoreSamples)},
        {"topology_route_accepted_count",
         summarizeSamples(summary.topologyRouteAcceptedCountSamples)},
        {"topology_seed_count", summarizeSamples(summary.topologySeedCountSamples)},
        {"topology_seed_coverage_count",
         summarizeSamples(summary.topologySeedCoverageCountSamples)},
        {"topology_core_candidate_coverage",
         summarizeSamples(summary.topologyCoreCandidateCoverageSamples)},
        {"topology_weak_query_added_candidates",
         summarizeSamples(summary.topologyAddedCandidatesSamples)},
        {"topology_weak_query_duplicate_candidates",
         summarizeSamples(summary.topologyDuplicateCandidatesSamples)},
        {"topology_weak_query_stale_candidates",
         summarizeSamples(summary.topologyStaleCandidatesSamples)},
        {"graph_community_supported_docs",
         summarizeSamples(summary.graphCommunitySupportedDocsSamples)},
        {"graph_community_edge_count", summarizeSamples(summary.graphCommunityEdgeCountSamples)},
        {"graph_community_largest_size",
         summarizeSamples(summary.graphCommunityLargestSizeSamples)},
        {"graph_community_signal_mass", summarizeSamples(summary.graphCommunitySignalMassSamples)},
        {"graph_community_boosted_docs",
         summarizeSamples(summary.graphCommunityBoostedDocsSamples)},
        {"graph_community_weight", summarizeSamples(summary.graphCommunityWeightSamples)},
        {"multi_vector_generated_phrases",
         summarizeSamples(summary.multiVectorGeneratedPhraseSamples)},
        {"multi_vector_raw_hit_count", summarizeSamples(summary.multiVectorRawHitSamples)},
        {"multi_vector_added_new_count", summarizeSamples(summary.multiVectorAddedNewSamples)},
        {"multi_vector_replaced_base_count",
         summarizeSamples(summary.multiVectorReplacedBaseSamples)},
        {"subphrase_generated_count", summarizeSamples(summary.subPhraseGeneratedSamples)},
        {"subphrase_clause_count", summarizeSamples(summary.subPhraseClauseSamples)},
        {"subphrase_fts_hit_count", summarizeSamples(summary.subPhraseFtsHitSamples)},
        {"subphrase_fts_added_count", summarizeSamples(summary.subPhraseFtsAddedSamples)},
        {"aggressive_fts_clause_count", summarizeSamples(summary.aggressiveFtsClauseSamples)},
        {"aggressive_fts_hit_count", summarizeSamples(summary.aggressiveFtsHitSamples)},
        {"aggressive_fts_added_count", summarizeSamples(summary.aggressiveFtsAddedSamples)},
    };

    json timings = json::object();
    for (const auto& timingName : trackedTimingKeys()) {
        auto it = summary.timingSamplesMs.find(timingName);
        if (it != summary.timingSamplesMs.end() && !it->second.empty()) {
            timings[timingName] = summarizeSamples(it->second);
        }
    }
    out["timings_ms"] = timings;

    json stageUniqueDocCounts = json::object();
    for (const auto& [stageName, samples] : summary.stageUniqueDocCountSamples) {
        stageUniqueDocCounts[stageName] = summarizeSamples(samples);
    }
    out["stage_unique_doc_counts"] = stageUniqueDocCounts;

    json stageRelevantDocCounts = json::object();
    for (const auto& [stageName, samples] : summary.stageRelevantDocCountSamples) {
        stageRelevantDocCounts[stageName] = summarizeSamples(samples);
    }
    out["stage_relevant_doc_counts"] = stageRelevantDocCounts;

    json stages = json::object();
    for (const auto& [stageName, enabledCount] : summary.stageEnabledCount) {
        const double enabled = static_cast<double>(enabledCount);
        const auto attemptedIt = summary.stageAttemptedCount.find(stageName);
        const auto contributedIt = summary.stageContributedCount.find(stageName);
        const auto skippedIt = summary.stageSkippedCount.find(stageName);
        const double attempted = attemptedIt != summary.stageAttemptedCount.end()
                                     ? static_cast<double>(attemptedIt->second)
                                     : 0.0;
        const double contributed = contributedIt != summary.stageContributedCount.end()
                                       ? static_cast<double>(contributedIt->second)
                                       : 0.0;
        const double skipped = skippedIt != summary.stageSkippedCount.end()
                                   ? static_cast<double>(skippedIt->second)
                                   : 0.0;
        const auto relevantIt = summary.stageRelevantPresenceCount.find(stageName);
        const double relevantPresence = relevantIt != summary.stageRelevantPresenceCount.end()
                                            ? static_cast<double>(relevantIt->second)
                                            : 0.0;
        stages[stageName] = {
            {"enabled_rate", enabled / queryCount},
            {"attempt_rate", attempted / queryCount},
            {"contribution_rate", contributed / queryCount},
            {"relevant_presence_rate", relevantPresence / queryCount},
            {"skip_rate", skipped / queryCount},
            {"skip_reasons", summary.stageSkipReasons.contains(stageName)
                                 ? json(summary.stageSkipReasons.at(stageName))
                                 : json::array()},
        };
    }
    out["stage_contributions"] = stages;

    json fusionSources = json::object();
    for (const auto& [sourceName, masses] : summary.fusionSourceScoreMassSamples) {
        auto finalDocIt = summary.fusionSourceFinalDocSamples.find(sourceName);
        fusionSources[sourceName] = {
            {"final_score_mass", summarizeSamples(masses)},
            {"final_top_doc_count", finalDocIt != summary.fusionSourceFinalDocSamples.end()
                                        ? summarizeSamples(finalDocIt->second)
                                        : json{{"count", 0},
                                               {"mean", 0.0},
                                               {"p50", 0.0},
                                               {"p95", 0.0},
                                               {"min", 0.0},
                                               {"max", 0.0}}},
        };
    }
    out["fusion_sources"] = fusionSources;

    json tunerSignals = json::object();
    for (const auto& [signalName, samples] : summary.tunerSignalSamples) {
        tunerSignals[signalName] = summarizeSamples(samples);
    }
    out["tuner_signals"] = tunerSignals;
    out["tuner_decisions"] = summary.tunerDecisionCounts;
    out["zoom_level_counts"] = summary.zoomLevelCounts;

    return out;
}

static void debugLogWriteJsonLine(const DebugLogEntry& e) {
    if (!g_debugOut)
        return;

    json j;
    j["query"] = e.query;
    if (e.queryIndex >= 0) {
        j["query_index"] = e.queryIndex;
    }
    j["search_type"] = e.searchType;
    j["relevant_doc_ids"] = e.relevantDocIds;
    j["relevant_files"] = e.relevantFiles;
    j["returned_paths"] = e.returnedPaths;
    j["returned_doc_ids"] = e.returnedDocIds;
    j["returned_scores"] = e.returnedScores;
    j["returned_grades"] = e.returnedGrades;
    j["attempts"] = e.attempts;
    j["used_streaming"] = e.usedStreaming;
    j["used_fuzzy_flag"] = e.usedFuzzyFlag;
    j["used_literal_flag"] = e.usedLiteralFlag;
    j["used_fuzzy_retry"] = e.usedFuzzyRetry;
    j["used_literal_retry"] = e.usedLiteralTextRetry;
    j["search_stats"] = e.searchStats;
    j["diag"] = e.diagnostics;

    if (const char* embBackend = std::getenv("YAMS_EMBED_BACKEND"); embBackend && *embBackend) {
        j["embedding_backend"] = embBackend;
    } else {
        j["embedding_backend"] = "daemon";
    }

    if (g_debugRunContext.has_value()) {
        j["run_id"] = g_debugRunContext->runId;
        j["candidate"] = g_debugRunContext->candidate;
        j["dataset"] = g_debugRunContext->dataset;
        j["corpus_size"] = g_debugRunContext->corpusSize;
        j["num_queries"] = g_debugRunContext->numQueries;
        j["top_k"] = g_debugRunContext->topK;
        j["trace_top_n"] = g_debugRunContext->traceTopN;
        j["trace_component_top_n"] = g_debugRunContext->traceComponentTopN;
        j["stage_trace_enabled"] = g_debugRunContext->stageTraceEnabled;
        if (!g_debugRunContext->debugFile.empty()) {
            j["debug_file"] = g_debugRunContext->debugFile;
        }
    }

    if (e.extraFields.is_object()) {
        for (const auto& [k, v] : e.extraFields.items()) {
            j[k] = v;
        }
    }

    std::lock_guard<std::mutex> lock(g_debugMutex);
    (*g_debugOut) << j.dump() << "\n";
    g_debugOut->flush();
}

// Store final metrics globally for summary after teardown
static RetrievalMetrics g_final_metrics;
static RetrievalMetrics g_keyword_metrics; // FTS5-only metrics for component isolation
static RetrievalMetrics g_grep_metrics;    // grep literal baseline for exact retrieval comparison
static QueryDiagnosticsSummary g_final_hybrid_diagnostics;
static QueryDiagnosticsSummary g_final_keyword_diagnostics;

struct EnvSetting {
    std::string key;
    std::optional<std::string> value;
};

class ScopedEnvOverrides {
public:
    explicit ScopedEnvOverrides(const std::vector<EnvSetting>& overrides) {
        environment_.reserve(overrides.size());
        for (const auto& setting : overrides) {
            environment_.emplace_back(setting.key, setting.value);
        }
    }

private:
    std::vector<yams::test::ScopedEnvVar> environment_;
};

struct OptimizationCandidate {
    std::string name;
    std::string description;
    std::vector<EnvSetting> envOverrides;
    bool enginePolicyCandidate = false;
    bool diagnosticCandidate = false;
};

struct OptimizationRunResult {
    OptimizationCandidate candidate;
    RetrievalMetrics hybridMetrics;
    RetrievalMetrics keywordMetrics;
    QueryDiagnosticsSummary hybridDiagnostics;
    QueryDiagnosticsSummary keywordDiagnostics;
    std::string tuningState;
    std::string tuningReason;
    std::string runId;
    std::string debugFile;
    int traceTopN = 0;
    int traceComponentTopN = 0;
    bool stageTraceEnabled = false;
    double objectiveScore = 0.0;
    double hybridEvalMs = 0.0;
    double keywordEvalMs = 0.0;
    std::string searchEngine =
        yams::vector::vectorSearchEngineName(yams::vector::VectorSearchEngine::SimeonPqAdc);
    std::uintmax_t vectorsDbBytes = 0;
    std::uintmax_t vectorsWalBytes = 0;
    std::uintmax_t persistedHnswNodes = 0;
    std::uintmax_t persistedHnswMetaRows = 0;
    std::uintmax_t persistedVec0Tables = 0;
    std::uintmax_t persistedVec0Rows = 0;
    std::uintmax_t persistedPqCodes = 0;
    std::uintmax_t persistedPqMeta = 0;
    bool success = false;
    std::string errorMessage;
};

struct BenchCacheMetadata {
    std::string dataset = "synthetic";
    std::string datasetPath;
    int corpusSize = 0;
    int numQueries = 0;
    int topK = 0;
    bool useBEIR = false;
    bool vectorsDisabled = false;
    bool requireKgReady = false;
    bool graphRerankRequested = false;
    std::string searchEngine =
        yams::vector::vectorSearchEngineName(yams::vector::VectorSearchEngine::SimeonPqAdc);
    int expectedDocs = 0;
    int expectedQueries = 0;
    std::uintmax_t corpusFingerprint = 0;
    std::string status = "priming";
    int embeddedDocs = 0;
    std::uintmax_t vectorCount = 0;
    bool vectorIndexReady = false;
    std::uintmax_t vectorsDbBytes = 0;
    std::uintmax_t vectorsWalBytes = 0;
    std::uintmax_t persistedHnswNodes = 0;
    std::uintmax_t persistedHnswMetaRows = 0;
    std::uintmax_t persistedVec0Tables = 0;
    std::uintmax_t persistedVec0Rows = 0;
    std::uintmax_t persistedPqCodes = 0;
    std::uintmax_t persistedPqMeta = 0;
};

struct PersistedHnswState {
    bool vectorsDbPresent = false;
    std::uintmax_t vectorsDbBytes = 0;
    std::uintmax_t vectorsWalBytes = 0;
    std::uintmax_t nodeRows = 0;
    std::uintmax_t metaRows = 0;
    std::uintmax_t vec0Tables = 0;
    std::uintmax_t vec0Rows = 0;
    std::uintmax_t pqCodeRows = 0;
    std::uintmax_t pqMetaRows = 0;
};

static std::string g_benchmark_search_engine =
    yams::vector::vectorSearchEngineName(yams::vector::VectorSearchEngine::SimeonPqAdc);
static std::string g_simeonEncoderProfile;
static std::string g_simeonFragmentEncoderProfile;
static std::optional<bool> g_simeonFragmentGeometryEnabled;
static std::optional<bool> g_simeonBm25Enabled;
static std::optional<bool> g_simeonRouterEnabled;
static bool g_requireDaemonNativeGraph = false;
static PersistedHnswState g_final_vector_index_state;

static void consumeXplanConfigArguments(int& argc, char** argv) {
    const auto takeValue = [](std::string_view argument,
                              std::string_view prefix) -> std::optional<std::string> {
        if (!argument.starts_with(prefix)) {
            return std::nullopt;
        }
        return std::string{argument.substr(prefix.size())};
    };
    int outputIndex = 1;
    for (int inputIndex = 1; inputIndex < argc; ++inputIndex) {
        const std::string_view argument{argv[inputIndex]};
        if (auto value = takeValue(argument, "--yams-simeon-encoder-profile="); value.has_value()) {
            g_simeonEncoderProfile = std::move(*value);
            continue;
        }
        if (auto value = takeValue(argument, "--yams-simeon-fragment-encoder-profile=");
            value.has_value()) {
            g_simeonFragmentEncoderProfile = std::move(*value);
            continue;
        }
        if (auto value = takeValue(argument, "--yams-simeon-fragment-geometry=");
            value.has_value()) {
            g_simeonFragmentGeometryEnabled = *value == "true" || *value == "1";
            continue;
        }
        if (auto value = takeValue(argument, "--yams-simeon-bm25="); value.has_value()) {
            g_simeonBm25Enabled = *value == "true" || *value == "1";
            continue;
        }
        if (auto value = takeValue(argument, "--yams-simeon-router="); value.has_value()) {
            g_simeonRouterEnabled = *value == "true" || *value == "1";
            continue;
        }
        if (auto value = takeValue(argument, "--yams-require-daemon-native-graph=");
            value.has_value()) {
            g_requireDaemonNativeGraph = *value == "true" || *value == "1";
            continue;
        }
        argv[outputIndex++] = argv[inputIndex];
    }
    argc = outputIndex;
}

static bool envTruthy(const char* value) {
    if (!value) {
        return false;
    }
    std::string normalized(value);
    std::transform(normalized.begin(), normalized.end(), normalized.begin(), [](char c) {
        return static_cast<char>(std::tolower(static_cast<unsigned char>(c)));
    });
    return normalized == "1" || normalized == "true" || normalized == "yes" || normalized == "on";
}

static yams::vector::VectorSearchEngine benchmarkVectorSearchEngine() {
    if (const char* raw = std::getenv("YAMS_VECTOR_SEARCH_ENGINE"); raw && *raw) {
        std::string normalized(raw);
        std::transform(normalized.begin(), normalized.end(), normalized.begin(), [](char c) {
            return static_cast<char>(std::tolower(static_cast<unsigned char>(c)));
        });
        if (auto parsed = yams::vector::parseVectorSearchEngine(normalized)) {
            return *parsed;
        }
        spdlog::warn(
            "[Bench] Invalid YAMS_VECTOR_SEARCH_ENGINE='{}'; using default {}", raw,
            yams::vector::vectorSearchEngineName(yams::vector::VectorSearchEngine::SimeonPqAdc));
    }
    return yams::vector::VectorSearchEngine::SimeonPqAdc;
}

static std::string benchmarkEngineCacheLabel() {
    const auto engine = benchmarkVectorSearchEngine();
    std::string label = yams::vector::vectorSearchEngineName(engine);
    return label;
}

static bool benchUseStreamingSearch() {
    // Retrieval quality benchmarks measure ranking quality, not IPC chunking behavior.
    // Default to unary search so streaming transport stalls do not skew IR evaluation,
    // while preserving an opt-in path for transport debugging.
    return envTruthy(std::getenv("YAMS_BENCH_ENABLE_STREAMING_SEARCH"));
}

static bool benchEvaluateGrepBaseline() {
    const char* value = std::getenv("YAMS_BENCH_EVALUATE_GREP_BASELINE");
    return value == nullptr || envTruthy(value);
}

static int parseIntEnvOrDefault(const char* key, int defaultValue, int minValue, int maxValue) {
    const int clampedDefault = std::clamp(defaultValue, minValue, maxValue);
    const char* raw = std::getenv(key);
    if (!(raw && *raw)) {
        return clampedDefault;
    }
    try {
        return std::clamp(std::stoi(raw), minValue, maxValue);
    } catch (...) {
        return clampedDefault;
    }
}

static std::size_t parseSizeEnvOrDefault(const char* key, std::size_t defaultValue) {
    const char* raw = std::getenv(key);
    if (!(raw && *raw)) {
        return defaultValue;
    }
    try {
        return static_cast<std::size_t>(std::max<long long>(0, std::stoll(raw)));
    } catch (...) {
        return defaultValue;
    }
}

static std::size_t parseSizeEnvOrFallback(const char* key, const char* fallbackKey,
                                          std::size_t defaultValue) {
    if (const char* raw = std::getenv(key); raw && *raw) {
        return parseSizeEnvOrDefault(key, defaultValue);
    }
    return parseSizeEnvOrDefault(fallbackKey, defaultValue);
}

static float parseFloatEnvOrDefault(const char* key, float defaultValue) {
    const char* raw = std::getenv(key);
    if (!(raw && *raw)) {
        return defaultValue;
    }
    try {
        return std::stof(raw);
    } catch (...) {
        return defaultValue;
    }
}

static std::string sanitizeLabelForFilename(const std::string& value) {
    std::string out;
    out.reserve(value.size());
    for (char c : value) {
        if (std::isalnum(static_cast<unsigned char>(c)) || c == '-' || c == '_') {
            out.push_back(c);
        } else {
            out.push_back('_');
        }
    }
    return out;
}

static std::string makeRunId(const std::string& candidate) {
    (void)candidate;
    const auto now = std::chrono::system_clock::now().time_since_epoch();
    const auto us = std::chrono::duration_cast<std::chrono::microseconds>(now).count();
    return std::to_string(us);
}

static std::uintmax_t fileSizeOrZero(const fs::path& path) {
    std::error_code ec;
    const auto size = fs::file_size(path, ec);
    return ec ? 0 : size;
}

static std::uintmax_t computePathFingerprint(const fs::path& path) {
    std::error_code ec;
    if (!fs::exists(path, ec)) {
        return 0;
    }

    if (fs::is_regular_file(path, ec)) {
        return fileSizeOrZero(path);
    }

    if (!fs::is_directory(path, ec)) {
        return 0;
    }

    std::uintmax_t fingerprint = 1469598103934665603ull;
    for (fs::recursive_directory_iterator it(path, ec), end; !ec && it != end; it.increment(ec)) {
        const auto entryPath = it->path();
        const auto relative = fs::relative(entryPath, path, ec);
        const std::string relativeString = ec ? entryPath.filename().string() : relative.string();
        for (unsigned char c : relativeString) {
            fingerprint ^= static_cast<std::uintmax_t>(c);
            fingerprint *= 1099511628211ull;
        }
        if (it->is_regular_file(ec)) {
            fingerprint ^= fileSizeOrZero(entryPath);
            fingerprint *= 1099511628211ull;
        }
        ec.clear();
    }
    return fingerprint;
}

static PersistedHnswState inspectPersistedHnswState(const fs::path& dataDir) {
    PersistedHnswState state;
    const fs::path vectorsDbPath = dataDir / "vectors.db";
    if (!fs::exists(vectorsDbPath)) {
        return state;
    }

    state.vectorsDbPresent = true;
    std::error_code sizeEc;
    state.vectorsDbBytes = fs::file_size(vectorsDbPath, sizeEc);
    if (sizeEc) {
        state.vectorsDbBytes = 0;
        sizeEc.clear();
    }
    const fs::path walPath = vectorsDbPath.string() + "-wal";
    if (fs::exists(walPath)) {
        state.vectorsWalBytes = fs::file_size(walPath, sizeEc);
        if (sizeEc) {
            state.vectorsWalBytes = 0;
            sizeEc.clear();
        }
    }

    sqlite3* db = nullptr;
    if (sqlite3_open_v2(vectorsDbPath.string().c_str(), &db, SQLITE_OPEN_READONLY, nullptr) !=
        SQLITE_OK) {
        spdlog::warn("[Bench] Failed to open persisted HNSW DB {}: {}", vectorsDbPath.string(),
                     db ? sqlite3_errmsg(db) : "open failed");
        if (db) {
            sqlite3_close(db);
        }
        return state;
    }
    sqlite3_busy_timeout(db, 5000);

    auto closeDb = [&]() {
        if (db) {
            sqlite3_close(db);
            db = nullptr;
        }
    };

    sqlite3_stmt* stmt = nullptr;
    const char* tableSql =
        "SELECT name FROM sqlite_master WHERE type='table' AND "
        "(name='vectors_hnsw_meta' OR name='vectors_hnsw_nodes' OR "
        " name LIKE 'vectors_%_hnsw_meta' OR name LIKE 'vectors_%_hnsw_nodes' OR "
        " name LIKE 'vectors_%_vec0' OR "
        " name='simeon_pq_codes' OR name='simeon_pq_meta' OR "
        " name LIKE 'vectors_%_simeon_pq_codes' OR name LIKE 'vectors_%_simeon_pq_meta')";
    if (sqlite3_prepare_v2(db, tableSql, -1, &stmt, nullptr) != SQLITE_OK) {
        spdlog::warn("[Bench] Failed to inspect persisted HNSW tables in {}: {}",
                     vectorsDbPath.string(), sqlite3_errmsg(db));
        closeDb();
        return state;
    }

    std::vector<std::string> tables;
    while (sqlite3_step(stmt) == SQLITE_ROW) {
        const auto* text = reinterpret_cast<const char*>(sqlite3_column_text(stmt, 0));
        if (text && *text) {
            tables.emplace_back(text);
        }
    }
    sqlite3_finalize(stmt);

    for (const auto& table : tables) {
        std::string countTarget = table;
        if (table.find("_vec0") != std::string::npos) {
            // vec0 virtual tables require the module to be loaded on the inspecting connection.
            // For benchmark readiness/footprint checks, count the shadow storage table directly.
            countTarget += "_vectors";
        }
        const std::string countSql = "SELECT COUNT(*) FROM \"" + countTarget + "\"";
        if (sqlite3_prepare_v2(db, countSql.c_str(), -1, &stmt, nullptr) != SQLITE_OK) {
            spdlog::warn("[Bench] Failed to count persisted vector table {} in {}: {}", countTarget,
                         vectorsDbPath.string(), sqlite3_errmsg(db));
            continue;
        }
        if (sqlite3_step(stmt) == SQLITE_ROW) {
            const auto count = static_cast<std::uintmax_t>(sqlite3_column_int64(stmt, 0));
            if (table.find("_hnsw_nodes") != std::string::npos) {
                state.nodeRows += count;
            } else if (table.find("_hnsw_meta") != std::string::npos) {
                state.metaRows += count;
            } else if (table.find("_vec0") != std::string::npos) {
                state.vec0Tables += 1;
                state.vec0Rows += count;
            } else if (table.find("simeon_pq_codes") != std::string::npos) {
                state.pqCodeRows += count;
            } else if (table.find("simeon_pq_meta") != std::string::npos) {
                state.pqMetaRows += count;
            }
        }
        sqlite3_finalize(stmt);
        stmt = nullptr;
    }

    closeDb();
    return state;
}

static json benchCacheMetadataToJson(const BenchCacheMetadata& metadata) {
    return {
        {"dataset", metadata.dataset},
        {"dataset_path", metadata.datasetPath},
        {"corpus_size", metadata.corpusSize},
        {"num_queries", metadata.numQueries},
        {"top_k", metadata.topK},
        {"use_beir", metadata.useBEIR},
        {"vectors_disabled", metadata.vectorsDisabled},
        {"require_kg_ready", metadata.requireKgReady},
        {"graph_rerank_requested", metadata.graphRerankRequested},
        {"search_engine", metadata.searchEngine},
        {"expected_docs", metadata.expectedDocs},
        {"expected_queries", metadata.expectedQueries},
        {"corpus_fingerprint", metadata.corpusFingerprint},
        {"status", metadata.status},
        {"embedded_docs", metadata.embeddedDocs},
        {"vector_count", metadata.vectorCount},
        {"vector_index_ready", metadata.vectorIndexReady},
        {"vectors_db_bytes", metadata.vectorsDbBytes},
        {"vectors_wal_bytes", metadata.vectorsWalBytes},
        {"persisted_hnsw_nodes", metadata.persistedHnswNodes},
        {"persisted_hnsw_meta_rows", metadata.persistedHnswMetaRows},
        {"persisted_vec0_tables", metadata.persistedVec0Tables},
        {"persisted_vec0_rows", metadata.persistedVec0Rows},
        {"persisted_pq_codes", metadata.persistedPqCodes},
        {"persisted_pq_meta", metadata.persistedPqMeta},
    };
}

static std::uintmax_t jsonUintValue(const json& j, const char* key, std::uintmax_t fallback = 0) {
    const auto it = j.find(key);
    if (it == j.end() || it->is_null()) {
        return fallback;
    }
    if (it->is_number_unsigned()) {
        return it->get<std::uintmax_t>();
    }
    if (it->is_number_integer()) {
        const auto value = it->get<std::intmax_t>();
        return value >= 0 ? static_cast<std::uintmax_t>(value) : fallback;
    }
    if (it->is_string()) {
        try {
            return static_cast<std::uintmax_t>(std::stoull(it->get<std::string>()));
        } catch (...) {
            return fallback;
        }
    }
    return fallback;
}

static std::optional<BenchCacheMetadata> parseBenchCacheMetadata(const json& j) {
    if (!j.is_object()) {
        return std::nullopt;
    }

    BenchCacheMetadata metadata;
    metadata.dataset = j.value("dataset", "synthetic");
    metadata.datasetPath = j.value("dataset_path", "");
    metadata.corpusSize = j.value("corpus_size", 0);
    metadata.numQueries = j.value("num_queries", 0);
    metadata.topK = j.value("top_k", 0);
    metadata.useBEIR = j.value("use_beir", false);
    metadata.vectorsDisabled = j.value("vectors_disabled", false);
    metadata.requireKgReady = j.value("require_kg_ready", false);
    metadata.graphRerankRequested = j.value("graph_rerank_requested", false);
    metadata.searchEngine =
        j.value("search_engine", std::string(yams::vector::vectorSearchEngineName(
                                     yams::vector::VectorSearchEngine::SimeonPqAdc)));
    metadata.expectedDocs = j.value("expected_docs", 0);
    metadata.expectedQueries = j.value("expected_queries", 0);
    metadata.corpusFingerprint = jsonUintValue(j, "corpus_fingerprint");
    metadata.status = j.value("status", std::string("priming"));
    metadata.embeddedDocs = j.value("embedded_docs", 0);
    metadata.vectorCount = jsonUintValue(j, "vector_count");
    metadata.vectorIndexReady = j.value("vector_index_ready", false);
    metadata.vectorsDbBytes = jsonUintValue(j, "vectors_db_bytes");
    metadata.vectorsWalBytes = jsonUintValue(j, "vectors_wal_bytes");
    metadata.persistedHnswNodes = jsonUintValue(j, "persisted_hnsw_nodes");
    metadata.persistedHnswMetaRows = jsonUintValue(j, "persisted_hnsw_meta_rows");
    metadata.persistedVec0Tables = jsonUintValue(j, "persisted_vec0_tables");
    metadata.persistedVec0Rows = jsonUintValue(j, "persisted_vec0_rows");
    metadata.persistedPqCodes = jsonUintValue(j, "persisted_pq_codes");
    metadata.persistedPqMeta = jsonUintValue(j, "persisted_pq_meta");
    return metadata;
}

static std::string canonicalPathOrEmpty(const fs::path& path) {
    if (path.empty()) {
        return {};
    }
    std::error_code ec;
    const auto canonical = fs::weakly_canonical(path, ec);
    if (!ec) {
        return canonical.string();
    }
    return path.lexically_normal().string();
}

static fs::path benchCacheMetadataPath(const fs::path& cacheDir) {
    return cacheDir / "retrieval_bench_cache.json";
}

static Result<BenchCacheMetadata> readBenchCacheMetadata(const fs::path& cacheDir) {
    const auto metadataPath = benchCacheMetadataPath(cacheDir);
    std::error_code ec;
    if (!fs::exists(metadataPath, ec)) {
        return Error{ErrorCode::NotFound, "Cache metadata not found: " + metadataPath.string()};
    }
    std::ifstream in(metadataPath);
    if (!in) {
        return Error{ErrorCode::IOError, "Failed to open cache metadata: " + metadataPath.string()};
    }
    json j;
    try {
        in >> j;
    } catch (const std::exception& e) {
        return Error{ErrorCode::InvalidArgument,
                     "Failed to parse cache metadata: " + std::string(e.what())};
    }
    auto parsed = parseBenchCacheMetadata(j);
    if (!parsed) {
        return Error{ErrorCode::InvalidArgument,
                     "Cache metadata schema invalid: " + metadataPath.string()};
    }
    return *parsed;
}

static Result<void> writeBenchCacheMetadata(const fs::path& cacheDir,
                                            const BenchCacheMetadata& metadata) {
    std::error_code ec;
    fs::create_directories(cacheDir, ec);
    if (ec) {
        return Error{ErrorCode::IOError,
                     "Failed to create cache dir: " + cacheDir.string() + ": " + ec.message()};
    }
    const auto metadataPath = benchCacheMetadataPath(cacheDir);
    std::ofstream out(metadataPath);
    if (!out) {
        return Error{ErrorCode::IOError,
                     "Failed to write cache metadata: " + metadataPath.string()};
    }
    out << benchCacheMetadataToJson(metadata).dump(2) << "\n";
    return Result<void>{};
}

static bool benchCacheMatches(const BenchCacheMetadata& expected, const BenchCacheMetadata& actual,
                              std::string* mismatchReason = nullptr) {
    auto mismatch = [&](std::string reason) {
        if (mismatchReason) {
            *mismatchReason = std::move(reason);
        }
        return false;
    };
    if (expected.dataset != actual.dataset)
        return mismatch("dataset mismatch");
    if (expected.datasetPath != actual.datasetPath)
        return mismatch("dataset path mismatch");
    if (expected.corpusSize != actual.corpusSize)
        return mismatch("corpus size mismatch");
    if (expected.numQueries != actual.numQueries)
        return mismatch("query count mismatch");
    if (expected.topK != actual.topK)
        return mismatch("top-k mismatch");
    if (expected.useBEIR != actual.useBEIR)
        return mismatch("beir flag mismatch");
    if (expected.vectorsDisabled != actual.vectorsDisabled)
        return mismatch("vectors disabled mismatch");
    if (expected.requireKgReady != actual.requireKgReady)
        return mismatch("kg requirement mismatch");
    if (expected.graphRerankRequested != actual.graphRerankRequested)
        return mismatch("graph rerank mismatch");
    if (expected.searchEngine != actual.searchEngine)
        return mismatch("search engine mismatch");
    if (expected.expectedDocs != actual.expectedDocs)
        return mismatch("expected docs mismatch");
    if (expected.expectedQueries != actual.expectedQueries)
        return mismatch("expected queries mismatch");
    if (expected.corpusFingerprint != 0 && actual.corpusFingerprint != 0 &&
        expected.corpusFingerprint != actual.corpusFingerprint) {
        return mismatch("corpus fingerprint mismatch");
    }
    if (actual.status != "primed") {
        return mismatch("cache status not reusable");
    }
    return true;
}

static BenchCacheMetadata
preferStrongerBenchCacheMetadata(BenchCacheMetadata preferred,
                                 const std::optional<BenchCacheMetadata>& candidate) {
    if (!candidate) {
        return preferred;
    }
    const auto& c = *candidate;
    if (preferred.datasetPath.empty())
        preferred.datasetPath = c.datasetPath;
    preferred.corpusFingerprint = std::max(preferred.corpusFingerprint, c.corpusFingerprint);
    preferred.expectedDocs = std::max(preferred.expectedDocs, c.expectedDocs);
    preferred.expectedQueries = std::max(preferred.expectedQueries, c.expectedQueries);
    preferred.embeddedDocs = std::max(preferred.embeddedDocs, c.embeddedDocs);
    preferred.vectorCount = std::max(preferred.vectorCount, c.vectorCount);
    preferred.vectorIndexReady = preferred.vectorIndexReady || c.vectorIndexReady;
    preferred.vectorsDbBytes = std::max(preferred.vectorsDbBytes, c.vectorsDbBytes);
    preferred.vectorsWalBytes = std::max(preferred.vectorsWalBytes, c.vectorsWalBytes);
    preferred.persistedHnswNodes = std::max(preferred.persistedHnswNodes, c.persistedHnswNodes);
    preferred.persistedHnswMetaRows =
        std::max(preferred.persistedHnswMetaRows, c.persistedHnswMetaRows);
    preferred.persistedVec0Tables = std::max(preferred.persistedVec0Tables, c.persistedVec0Tables);
    preferred.persistedVec0Rows = std::max(preferred.persistedVec0Rows, c.persistedVec0Rows);
    preferred.persistedPqCodes = std::max(preferred.persistedPqCodes, c.persistedPqCodes);
    preferred.persistedPqMeta = std::max(preferred.persistedPqMeta, c.persistedPqMeta);
    if (preferred.status != "primed" && c.status == "primed") {
        preferred.status = c.status;
    }
    return preferred;
}

static BenchCacheMetadata currentBenchCacheMetadata(BenchCacheMetadata metadata,
                                                    const yams::daemon::StatusResponse& status,
                                                    const fs::path& dataDir,
                                                    bool validatedIndexReusable) {
    auto getCount = [&](std::string_view key) -> std::uintmax_t {
        auto it = status.requestCounts.find(std::string(key));
        return it == status.requestCounts.end() ? 0 : it->second;
    };
    const auto persistedHnsw = inspectPersistedHnswState(dataDir);
    metadata.vectorIndexReady = validatedIndexReusable;
    metadata.vectorsDbBytes = persistedHnsw.vectorsDbBytes;
    metadata.vectorsWalBytes = persistedHnsw.vectorsWalBytes;
    metadata.persistedHnswNodes = persistedHnsw.nodeRows;
    metadata.persistedHnswMetaRows = persistedHnsw.metaRows;
    metadata.persistedVec0Tables = persistedHnsw.vec0Tables;
    metadata.persistedVec0Rows = persistedHnsw.vec0Rows;
    metadata.persistedPqCodes = persistedHnsw.pqCodeRows;
    metadata.persistedPqMeta = persistedHnsw.pqMetaRows;
    metadata.embeddedDocs = static_cast<int>(getCount("documents_embedded"));
    metadata.vectorCount = getCount("vector_count");
    const bool queueDrained = getCount("embed_svc_queued") == 0 && getCount("embed_in_flight") == 0;
    const bool fullCoverage =
        metadata.embeddedDocs >= metadata.expectedDocs && metadata.expectedDocs > 0;
    const bool cacheIndexReady = metadata.vectorsDisabled || metadata.vectorIndexReady;
    metadata.status = (queueDrained && fullCoverage && cacheIndexReady) ? "primed" : "partial";
    return metadata;
}

static fs::path makeCandidateDebugPath(const fs::path& base, const std::string& candidate,
                                       const std::string& runId) {
    const auto safeCandidate = sanitizeLabelForFilename(candidate);
    const auto stem = base.stem().string();
    const auto ext = base.extension().string();
    const auto suffix = "_" + safeCandidate + "_" + runId;
    if (!stem.empty()) {
        return base.parent_path() / (stem + suffix + ext);
    }
    return base.parent_path() / (base.filename().string() + suffix);
}

static bool hasOverrideKey(const std::vector<EnvSetting>& settings, const std::string& key) {
    return std::any_of(settings.begin(), settings.end(),
                       [&](const EnvSetting& setting) { return setting.key == key; });
}

static std::vector<OptimizationCandidate> defaultOptimizationCandidates() {
    return {
        {"auto_baseline",
         "Auto tuner baseline with graph rerank enabled",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_DISABLE_SEARCH_REBUILDS", "0"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", std::nullopt},
             {"YAMS_CANDIDATE_MULTIPLIER", std::nullopt},
         },
         true},
        {"mixed_precision_profile",
         "MIXED precision preset with lexical and vector guardrails",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
         }},
        {"mixed_precision_zoom_map",
         "MIXED_PRECISION with map-level navigation bias",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ZOOM_LEVEL", "MAP"},
         }},
        {"mixed_precision_zoom_neighborhood",
         "MIXED_PRECISION with neighborhood navigation bias",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ZOOM_LEVEL", "NEIGHBORHOOD"},
         }},
        {"mixed_precision_zoom_street",
         "MIXED_PRECISION with street-level precision bias",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ZOOM_LEVEL", "STREET"},
         }},
        {"mixed_precision_semantic_recall_v1",
         "MIXED_PRECISION + looser vector gate + extra semantic rescue",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         }},
        {"mixed_precision_semantic_recall_lexical14_v1",
         "Semantic recall v1 + stronger lexical floor/tiebreak guardrails",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
         }},
        {"mixed_default",
         "Code/mixed tuned state with benchmark defaults",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
         }},
        {"mixed_precision_lexical_floor",
         "MIXED defaults + lexical floor to preserve top text hits",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "8"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.12"},
         }},
        {"mixed_precision_lexical_floor_strong",
         "MIXED defaults + stronger lexical floor",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "12"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.20"},
         }},
        {"mixed_precision_lexical_floor_strong_tiebreak",
         "MIXED stronger lexical floor with lexical tie-break",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "12"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.20"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
         }},
        {"small_code_precision",
         "Code-heavy state with stronger lexical/entity bias",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "SMALL_CODE"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         }},
        {"mixed_recall_push",
         "MIXED state with larger candidate pool and no vector skip",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_CANDIDATE_MULTIPLIER", "2.0"},
         }},
        {"mixed_baseline",
         "MIXED state baseline",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         }},
        {"mixed_precision_guardrails",
         "MIXED + weighted reciprocal with vector-only precision guardrails",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "10"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.93"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.70"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.07"},
         }},
        {"mixed_precision_mrr_recovery_rrf",
         "MIXED weighted reciprocal with softer vector-only guardrails",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "16"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.91"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.82"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
         }},
        {"mixed_precision_rrf_neighbor_t92_p80_k14",
         "MIXED weighted reciprocal near-neighbor: stricter threshold, lower RRF k",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "14"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.80"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
         }},
        {"mixed_precision_rrf_neighbor_t92_p78_k16",
         "MIXED weighted reciprocal near-neighbor: stricter threshold and penalty",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "16"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.78"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
         }},
        {"mixed_precision_rrf_neighbor_t90_p84_k18",
         "MIXED weighted reciprocal near-neighbor: looser threshold, higher RRF k",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "18"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.90"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.84"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
         }},
        {"mixed_precision_rrf_rerank10",
         "MIXED weighted reciprocal with broader rerank window",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "16"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.91"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.82"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "10"},
         }},
        {"mixed_ablation_disable_vector_gate",
         "Ablation: disable vector-only threshold/penalty",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "16"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.00"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "1.00"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
         }},
        {"mixed_ablation_disable_intent_adaptive",
         "Ablation: disable query intent weighting",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "16"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.91"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.82"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
             {"YAMS_SEARCH_ENABLE_INTENT_ADAPTIVE", "0"},
         }},
        {"mixed_ablation_disable_graph_rerank",
         "Ablation: disable graph reranking",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "0"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "16"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.91"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.82"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
         }},
        {"mixed_ablation_disable_reranker",
         "Ablation: disable cross-encoder reranking stage",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "16"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.91"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.82"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.05"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "0"},
         }},
        {"scientific_precision_guardrails",
         "SCIENTIFIC state with strict vector-only thresholding",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "SCIENTIFIC"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "0"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_RRF_K", "10"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.94"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.68"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.08"},
         },
         true},
        // ── SCIENTIFIC retrieval candidates ────────────────────────────
        // Purpose: optimize pre-fusion recall and vector-text balance for
        // scientific/benchmark corpora (SciFact, TREC-COVID, NFCorpus).
        {"scientific_ablation_graph_off",
         "SCIENTIFIC auto baseline with graph rerank disabled",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "0"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_ablation_no_semantic_rescue",
         "SCIENTIFIC auto baseline with semantic rescue disabled",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "0"},
         },
         true},
        {"scientific_semantic_recall_v1",
         "SCIENTIFIC auto + extra semantic rescue + looser vector gate",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.82"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "4"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.55"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_vector_fanout_2x",
         "SCIENTIFIC auto + 2x vector fanout (vectorMaxResults 150->300)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_CANDIDATE_MULTIPLIER", "2.0"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_rrf_k6",
         "SCIENTIFIC auto + tighter RRF k=6 (stronger top-rank preference)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_RRF_K", "6"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_rrf_k24",
         "SCIENTIFIC auto + looser RRF k=24 (smoother cross-component fusion)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_RRF_K", "24"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        // ── Aggressive recall-push candidates (corpus-state-aware) ────────
        {"scientific_recall_aggressive_v1",
         "SCI scientific auto + recall push: vec200 sim0.10 rescue6 strong_vec0.60",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_SIMILARITY_THRESHOLD", "0.10"},
             {"YAMS_SEARCH_VECTOR_MAX_RESULTS", "200"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "6"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.50"},
             {"YAMS_SEARCH_ENABLE_STRONG_VECTOR_ONLY_RELIEF", "1"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_MIN_SCORE", "0.60"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_TOPRANK", "6"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_PENALTY", "0.94"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.82"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.90"},
             {"YAMS_SEARCH_WEAK_QUERY_VECTOR_FANOUT_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_recall_max_v1",
         "SCI max recall: vec250 sim0.05 rescue8 rerank20 strong_vec0.55 fanout3.5",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_SIMILARITY_THRESHOLD", "0.05"},
             {"YAMS_SEARCH_VECTOR_MAX_RESULTS", "250"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "8"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.45"},
             {"YAMS_SEARCH_ENABLE_STRONG_VECTOR_ONLY_RELIEF", "1"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_MIN_SCORE", "0.55"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_TOPRANK", "8"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_PENALTY", "0.95"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.80"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.92"},
             {"YAMS_SEARCH_WEAK_QUERY_VECTOR_FANOUT_MULTIPLIER", "3.5"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_recall_vec300",
         "SCI max pool: vec300 sim0.05 rescue10 rerank25",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_SIMILARITY_THRESHOLD", "0.05"},
             {"YAMS_SEARCH_VECTOR_MAX_RESULTS", "300"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "10"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.40"},
             {"YAMS_SEARCH_ENABLE_STRONG_VECTOR_ONLY_RELIEF", "1"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_MIN_SCORE", "0.50"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_TOPRANK", "10"},
             {"YAMS_SEARCH_STRONG_VECTOR_ONLY_PENALTY", "0.95"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.78"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.94"},
             {"YAMS_SEARCH_WEAK_QUERY_VECTOR_FANOUT_MULTIPLIER", "4.0"},
             {"YAMS_SEARCH_RERANK_TOPK", "25"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        // ── Retrieval-lane candidates (enable disabled lanes for recall) ──
        {"scientific_entity_vec_on",
         "SCI scientific auto + entity vector retrieval enabled (GLiNER concepts)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENTITY_VECTOR_WEIGHT", "0.15"},
             {"YAMS_SEARCH_ENTITY_VECTOR_MAX_RESULTS", "80"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_concept_boost_on",
         "SCI scientific auto + concept boosting enabled (mined concepts)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.12"},
             {"YAMS_SEARCH_CONCEPT_MIN_CONFIDENCE", "0.35"},
             {"YAMS_SEARCH_CONCEPT_MAX_COUNT", "8"},
             {"YAMS_SEARCH_CONCEPT_MAX_BOOST", "0.28"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_entity_concept_combined",
         "SCI entity_vec + concept_boost + rescue=4 (multi-lane recall)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENTITY_VECTOR_WEIGHT", "0.12"},
             {"YAMS_SEARCH_ENTITY_VECTOR_MAX_RESULTS", "60"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.10"},
             {"YAMS_SEARCH_CONCEPT_MIN_CONFIDENCE", "0.35"},
             {"YAMS_SEARCH_CONCEPT_MAX_COUNT", "6"},
             {"YAMS_SEARCH_CONCEPT_MAX_BOOST", "0.22"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "4"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_rrf_k8",
         "SCI scientific auto + RRF k=8 (tight top-rank focus)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_RRF_K", "8"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_subphrase_aggressive",
         "SCI + aggressive sub-phrase expansion + rescue=4",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENABLE_SUB_PHRASE_EXPANSION", "1"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION_MIN_HITS", "2"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION_PENALTY", "0.60"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "4"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_combined_v1",
         "entity_vec + concept_boost + rrf_k6 + rescue=4 + subphrase aggressive",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_ENTITY_VECTOR_WEIGHT", "0.12"},
             {"YAMS_SEARCH_ENTITY_VECTOR_MAX_RESULTS", "60"},
             {"YAMS_SEARCH_CONCEPT_BOOST_WEIGHT", "0.10"},
             {"YAMS_SEARCH_CONCEPT_MIN_CONFIDENCE", "0.35"},
             {"YAMS_SEARCH_CONCEPT_MAX_COUNT", "6"},
             {"YAMS_SEARCH_CONCEPT_MAX_BOOST", "0.22"},
             {"YAMS_SEARCH_RRF_K", "6"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "4"},
             {"YAMS_SEARCH_ENABLE_SUB_PHRASE_EXPANSION", "1"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION_MIN_HITS", "2"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION_PENALTY", "0.60"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_text_heavy",
         "SCI text weight 0.55 + simeon 0.15 + vector 0.20 (lexical-first)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_TEXT_WEIGHT", "0.55"},
             {"YAMS_SEARCH_SIMEON_TEXT_WEIGHT", "0.15"},
             {"YAMS_SEARCH_VECTOR_WEIGHT", "0.20"},
             {"YAMS_SEARCH_RRF_K", "6"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_strategy_router",
         "SCI + simeon EntropyRouter (BM25/Keyphrase/LeadField per-query strategy)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SIMEON_STRATEGY_ROUTER_ENABLED", "1"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"scientific_strategy_router_rrf6",
         "SCI EntropyRouter + RRF k=6 + rescue=4 + subphrase aggressive",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SIMEON_STRATEGY_ROUTER_ENABLED", "1"},
             {"YAMS_SEARCH_RRF_K", "6"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "4"},
             {"YAMS_SEARCH_ENABLE_SUB_PHRASE_EXPANSION", "1"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION_MIN_HITS", "2"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION_PENALTY", "0.60"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         },
         true},
        {"mixed_graph_off",
         "MIXED state with graph rerank disabled",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "0"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
         }},

        // ── Tier-1 diagnostic candidates ──────────────────────────────
        // Purpose: determine if the 14 both-miss queries are recoverable
        // by expanding the candidate pool and/or the evaluation window.

        {"diag_winner_3x_candidates",
         "Winner config + 3x candidate multiplier (vector pool 150->450)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
         },
         false,
         true},
        {"diag_winner_topk20",
         "Winner config + topK=20 (recall@20 diagnostic)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_BENCH_TOPK", "20"},
         },
         false,
         true},
        {"diag_winner_topk50",
         "Winner config + topK=50 (recall@50 diagnostic)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_BENCH_TOPK", "50"},
         },
         false,
         true},
        {"diag_winner_3x_topk50",
         "Winner + 3x candidates + topK=50 (maximum retrieval diagnostic)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_BENCH_TOPK", "50"},
         },
         false,
         true},

        // ── Tier-2 cross-encoder reranker candidates ──────────────────
        // Strategy: expand pool (3x) to get ~50 candidates, then use the
        // bge-reranker-large cross-encoder to rescore and promote relevant
        // documents that the bi-encoder ranked at positions 11-49 into
        // the top-10.  Tier-1 diagnostics showed 7 of 14 both-miss
        // queries have relevant docs at ranks 11-49 — reranking should
        // recover these.
        // Current benchmark evidence: blend-60 beats blend-70 on both q20 and q300,
        // while graph rerank / semantic rescue stay effectively inactive on SciFact.
        // Treat rerank_3x_blend60_top50 as the engine-policy baseline; heavier recall probes
        // below remain diagnostics unless they win on both quality and latency.

        {"rerank_3x_replace_top50",
         "3x pool + cross-encoder rerank top-50, replace scores (max reranker impact)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank the top-50 candidates
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "1"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"rerank_3x_blend60_top50",
         "Current q300 winner: 3x pool + cross-encoder rerank top-50, blend 60/40 with fusion "
         "scores",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank the top-50, blend scores
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         },
         true,
         false},
        {"rerank_4x_blend60_top50",
         "Pre-fusion recall probe: winner + larger candidate multiplier (4x), rerank window stays "
         "at top-50",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "4.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         },
         false,
         true},
        {"rerank_3x_blend60_top50_fuse100",
         "Pre-fusion recall probe: winner + moderately wider fusion window (fusion limit 100)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_FUSION_CANDIDATE_LIMIT", "100"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         },
         false,
         true},
        {"rerank_3x_blend60_top50_lexical16",
         "Pre-fusion recall probe: winner + milder lexical floor (top-16 / +0.24)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "16"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.24"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         },
         false,
         true},
        {"rerank_3x_blend60_top50_fuse200",
         "Pre-fusion recall probe: winner + wider fusion window (fusion limit 200), rerank window "
         "stays at top-50",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_FUSION_CANDIDATE_LIMIT", "200"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"rerank_3x_blend60_top50_lexical20",
         "Pre-fusion recall probe: winner + stronger lexical floor (top-20 / +0.30)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "20"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.30"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"kg_budget_5ms",
         "KG tradeoff probe: keep winner policy but tighten graph scoring budget to 5ms",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_GRAPH_BUDGET_MS", "5"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             {"YAMS_SEARCH_INCLUDE_COMPONENT_TIMING", "1"},
         },
         false,
         true},
        {"kg_topn_12",
         "KG tradeoff probe: keep winner policy but limit graph rerank window to top-12",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_GRAPH_RERANK_TOPN", "12"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             {"YAMS_SEARCH_INCLUDE_COMPONENT_TIMING", "1"},
         },
         false,
         true},
        {"kg_weight_002_topn12",
         "KG tradeoff probe: keep KG enabled with lighter weight 0.02 and top-12 rerank window",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_KG_WEIGHT", "0.02"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_GRAPH_RERANK_TOPN", "12"},
             {"YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "0.12"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             {"YAMS_SEARCH_INCLUDE_COMPONENT_TIMING", "1"},
         },
         false,
         true},
        {"rerank_3x_blend40_top50",
         "3x pool + cross-encoder rerank top-50, blend 40/60 (conservative)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank the top-50, conservative blend
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.40"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"rerank_3x_replace_top50_snippet512",
         "3x pool + cross-encoder rerank top-50, replace scores, 512-char snippets",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank top-50, larger snippets for more context
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "1"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "512"},
         }},
        // --- Faster rerank candidates (top-20) for quicker iteration ---
        {"rerank_3x_replace_top20",
         "3x pool + cross-encoder rerank top-20, replace scores",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "1"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"rerank_3x_blend40_top20",
         "3x pool + cross-encoder rerank top-20, blend 40/60 (conservative)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.40"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"rerank_3x_blend60_top20",
         "3x pool + cross-encoder rerank top-20, blend 60/40",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},

        // Adaptive blend: scale reranker weight by max-score confidence
        {"rerank_3x_adaptive80_top20",
         "3x pool + cross-encoder rerank top-20, adaptive blend (base 0.80, floor 0.10)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.80"},
             {"YAMS_SEARCH_RERANK_ADAPTIVE_BLEND", "1"},
             {"YAMS_SEARCH_RERANK_ADAPTIVE_BLEND_FLOOR", "0.10"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},

        {"rerank_3x_adaptive60_top20",
         "3x pool + cross-encoder rerank top-20, adaptive blend (base 0.60, floor 0.05)",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.60"},
             {"YAMS_SEARCH_RERANK_ADAPTIVE_BLEND", "1"},
             {"YAMS_SEARCH_RERANK_ADAPTIVE_BLEND_FLOOR", "0.05"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},

        {"rerank_3x_blend70_top20",
         "3x pool + cross-encoder rerank top-20, blend 70/30 with fusion scores",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank the top-20, stronger blend
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.70"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"rerank_3x_blend80_top20",
         "3x pool + cross-encoder rerank top-20, blend 80/20 with fusion scores",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank the top-20, aggressive blend
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "20"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.80"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},
        {"rerank_3x_blend70_top50",
         "3x pool + cross-encoder rerank top-50, blend 70/30 with fusion scores",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank the top-50, strong blend
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.70"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
         }},

        // Wide fusion window: pass many more fused results through the reranker
        {"rerank_3x_blend70_top200_fuse200",
         "3x pool + cross-encoder rerank top-200, blend 70/30, fusion window 200",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             // Cross-encoder reranking: rerank the top-200, strong blend
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "200"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.70"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             // Wider fusion window: keep 200 fused results (vs default 50)
             {"YAMS_SEARCH_FUSION_CANDIDATE_LIMIT", "200"},
         }},

        // ── Tier 3: query expansion before rerank ───────────────────────────

        {"rerank_3x_blend70_top50_multivec",
         "3x pool + rerank top-50, blend 70/30, multi-vector sub-phrase search",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.70"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             {"YAMS_SEARCH_MULTI_VECTOR_QUERY", "1"},
             {"YAMS_SEARCH_MULTI_VECTOR_MAX_PHRASES", "3"},
             {"YAMS_SEARCH_MULTI_VECTOR_SCORE_DECAY", "0.85"},
         }},

        {"rerank_3x_blend70_top50_subphrase_fts",
         "3x pool + rerank top-50, blend 70/30, sub-phrase FTS expansion",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.70"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION", "1"},
             {"YAMS_SEARCH_SUB_PHRASE_MIN_HITS", "5"},
             {"YAMS_SEARCH_SUB_PHRASE_PENALTY", "0.70"},
         }},

        {"rerank_3x_blend70_top50_multivec_subphrase",
         "3x pool + rerank top-50, blend 70/30, multi-vector + sub-phrase FTS",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.70"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             {"YAMS_SEARCH_MULTI_VECTOR_QUERY", "1"},
             {"YAMS_SEARCH_MULTI_VECTOR_MAX_PHRASES", "3"},
             {"YAMS_SEARCH_MULTI_VECTOR_SCORE_DECAY", "0.85"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION", "1"},
             {"YAMS_SEARCH_SUB_PHRASE_MIN_HITS", "5"},
             {"YAMS_SEARCH_SUB_PHRASE_PENALTY", "0.70"},
         }},

        {"rerank_3x_blend50_top50_multivec_subphrase",
         "3x pool + rerank top-50, blend 50/50, multi-vector + sub-phrase FTS",
         {
             {"YAMS_ENABLE_ENV_OVERRIDES", "1"},
             {"YAMS_BENCH_FORCE_TUNING_OVERRIDE", std::nullopt},
             {"YAMS_TUNING_OVERRIDE", "MIXED_PRECISION"},
             {"YAMS_SEARCH_ENABLE_GRAPH_RERANK", "1"},
             {"YAMS_SEARCH_VECTOR_ONLY_THRESHOLD", "0.92"},
             {"YAMS_SEARCH_VECTOR_ONLY_PENALTY", "0.65"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_SLOTS", "2"},
             {"YAMS_SEARCH_SEMANTIC_RESCUE_MIN_VECTOR_SCORE", "0.30"},
             {"YAMS_SEARCH_ENABLE_ADAPTIVE_FALLBACK", "0"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_TOPN", "14"},
             {"YAMS_SEARCH_LEXICAL_FLOOR_BOOST", "0.22"},
             {"YAMS_SEARCH_ENABLE_LEXICAL_TIEBREAK", "1"},
             {"YAMS_SEARCH_LEXICAL_TIEBREAK_EPS", "0.010"},
             {"YAMS_CANDIDATE_MULTIPLIER", "3.0"},
             {"YAMS_SEARCH_ENABLE_RERANKING", "1"},
             {"YAMS_SEARCH_RERANK_TOPK", "50"},
             {"YAMS_SEARCH_RERANK_REPLACE_SCORES", "0"},
             {"YAMS_SEARCH_RERANK_WEIGHT", "0.50"},
             {"YAMS_SEARCH_RERANK_SCORE_GAP_THRESHOLD", "0.0"},
             {"YAMS_SEARCH_RERANK_SNIPPET_MAX_CHARS", "256"},
             {"YAMS_SEARCH_MULTI_VECTOR_QUERY", "1"},
             {"YAMS_SEARCH_MULTI_VECTOR_MAX_PHRASES", "3"},
             {"YAMS_SEARCH_MULTI_VECTOR_SCORE_DECAY", "0.85"},
             {"YAMS_SEARCH_SUB_PHRASE_EXPANSION", "1"},
             {"YAMS_SEARCH_SUB_PHRASE_MIN_HITS", "5"},
             {"YAMS_SEARCH_SUB_PHRASE_PENALTY", "0.70"},
         }},
    };
}

static std::set<std::string> parseCandidateFilter(const char* raw) {
    std::set<std::string> selected;
    if (!raw || !*raw) {
        return selected;
    }

    std::string value(raw);
    std::stringstream ss(value);
    std::string token;
    while (std::getline(ss, token, ',')) {
        auto trim = [](std::string& s) {
            const auto first = s.find_first_not_of(" \t\n\r");
            if (first == std::string::npos) {
                s.clear();
                return;
            }
            const auto last = s.find_last_not_of(" \t\n\r");
            s = s.substr(first, last - first + 1);
        };
        trim(token);
        if (!token.empty()) {
            selected.insert(token);
        }
    }
    return selected;
}

enum class OptimizationProfile {
    EnginePolicy,
    Diagnostics,
    All,
};

static OptimizationProfile parseOptimizationProfile(const char* raw) {
    if (!raw || !*raw) {
        return OptimizationProfile::EnginePolicy;
    }

    std::string value(raw);
    std::transform(value.begin(), value.end(), value.begin(),
                   [](unsigned char c) { return static_cast<char>(std::tolower(c)); });

    if (value == "diagnostic" || value == "diagnostics" || value == "probe" || value == "probes") {
        return OptimizationProfile::Diagnostics;
    }
    if (value == "all") {
        return OptimizationProfile::All;
    }
    return OptimizationProfile::EnginePolicy;
}

static const char* optimizationProfileName(OptimizationProfile profile) {
    switch (profile) {
        case OptimizationProfile::EnginePolicy:
            return "engine-policy";
        case OptimizationProfile::Diagnostics:
            return "diagnostics";
        case OptimizationProfile::All:
            return "all";
    }
    return "engine-policy";
}

static double computeHybridRegressionPenalty(const RetrievalMetrics& hybrid,
                                             const RetrievalMetrics& keyword) {
    const double hybridMrrLoss = std::max(0.0, keyword.mrr - hybrid.mrr);
    return std::min(0.12, hybridMrrLoss * 2.0);
}

static double computeDuplicatePenalty(const RetrievalMetrics& hybrid) {
    return std::min(0.08, std::max(0.0, hybrid.duplicateRateAtK) * 0.30);
}

static double computeLatencyPenalty(double avgHybridQueryMs) {
    // Keep latency meaningful in the 3-7s/query range seen in real SciFact runs.
    // The previous cap saturated far too early and made materially slower candidates
    // look effectively free once they crossed ~800ms/query.
    return std::clamp(std::max(0.0, avgHybridQueryMs) / 25000.0, 0.0, 0.25);
}

static double computePrecisionFailurePenalty(const QueryDiagnosticsSummary& summary) {
    const double queryCount = static_cast<double>(std::max<std::uint64_t>(summary.queryCount, 1));
    const double noRelevantHitRate =
        static_cast<double>(summary.queryWithoutRelevantHitCount) / queryCount;
    const double missPreFusionRate =
        static_cast<double>(summary.missMissingPreFusionCount) / queryCount;
    const double fusionCutoffRate = static_cast<double>(summary.missFusionCutoffCount) / queryCount;
    const double rerankDropRate =
        static_cast<double>(summary.missRerankWindowDropCount) / queryCount;
    const double topKDropRate = static_cast<double>(summary.missTopKDropCount) / queryCount;

    return std::min(0.25, missPreFusionRate * 0.25 + noRelevantHitRate * 0.10 +
                              fusionCutoffRate * 0.04 + rerankDropRate * 0.05 +
                              topKDropRate * 0.03);
}

static std::string summarizeTimingTradeoffs(const json& hybridDiag) {
    if (!hybridDiag.is_object()) {
        return "timings=unavailable";
    }
    const auto timingsIt = hybridDiag.find("timings_ms");
    if (timingsIt == hybridDiag.end() || !timingsIt->is_object()) {
        return "timings=unavailable";
    }

    const json& timings = *timingsIt;
    std::vector<std::pair<std::string, double>> ranked;
    ranked.reserve(timings.size());
    for (const auto& [name, stats] : timings.items()) {
        if (!stats.is_object()) {
            continue;
        }
        auto meanIt = stats.find("mean");
        if (meanIt == stats.end() || !meanIt->is_number()) {
            continue;
        }
        ranked.emplace_back(name, meanIt->get<double>());
    }

    if (ranked.empty()) {
        return "timings=unavailable";
    }

    std::sort(ranked.begin(), ranked.end(),
              [](const auto& a, const auto& b) { return a.second > b.second; });

    std::ostringstream oss;
    oss << std::fixed << std::setprecision(1);
    const size_t limit = std::min<size_t>(3, ranked.size());
    for (size_t i = 0; i < limit; ++i) {
        if (i > 0) {
            oss << "  ";
        }
        oss << ranked[i].first << '=' << ranked[i].second << "ms";
    }
    return oss.str();
}

static std::string summarizeStageTradeoffs(const json& hybridDiag) {
    if (!hybridDiag.is_object()) {
        return "stages=unavailable";
    }
    const auto stagesIt = hybridDiag.find("stage_contributions");
    if (stagesIt == hybridDiag.end() || !stagesIt->is_object()) {
        return "stages=unavailable";
    }

    const json& stages = *stagesIt;
    std::vector<std::string> parts;
    for (const auto& [name, stats] : stages.items()) {
        if (!stats.is_object()) {
            continue;
        }
        const double contributionRate = stats.value("contribution_rate", 0.0);
        const double skipRate = stats.value("skip_rate", 0.0);
        if (contributionRate <= 0.0 && skipRate <= 0.0) {
            continue;
        }
        std::ostringstream oss;
        oss << name << ":contrib=" << std::fixed << std::setprecision(2) << contributionRate
            << ",skip=" << skipRate;
        parts.push_back(oss.str());
    }

    if (parts.empty()) {
        return "stages=unavailable";
    }

    std::sort(parts.begin(), parts.end());
    if (parts.size() > 3) {
        parts.resize(3);
    }

    std::ostringstream out;
    for (size_t i = 0; i < parts.size(); ++i) {
        if (i > 0) {
            out << "  ";
        }
        out << parts[i];
    }
    return out.str();
}

static std::string summarizeStageMetricGaps(const json& hybridDiag) {
    if (!hybridDiag.is_object()) {
        return "stage_metrics=unavailable";
    }
    const auto metricsIt = hybridDiag.find("stage_metrics");
    if (metricsIt == hybridDiag.end() || !metricsIt->is_object() || metricsIt->empty()) {
        return "stage_metrics=unavailable";
    }

    static const std::vector<std::string> kStageOrder = {
        "pre_fusion", "graphless_post_fusion", "post_fusion", "post_graph", "final",
    };

    std::vector<std::string> parts;
    for (const auto& stage : kStageOrder) {
        auto stageIt = metricsIt->find(stage);
        if (stageIt == metricsIt->end() || !stageIt->is_object()) {
            continue;
        }
        const double mrr = stageIt->value("mrr", 0.0);
        const double recall = stageIt->value("recall_at_k", 0.0);
        const double ndcg = stageIt->value("ndcg_at_k", 0.0);
        const double mrrDelta = stageIt->value("mrr_delta_vs_final", 0.0);
        const double ndcgDelta = stageIt->value("ndcg_delta_vs_final", 0.0);
        std::ostringstream oss;
        oss << stage << ":mrr=" << std::fixed << std::setprecision(3) << mrr
            << "(d=" << std::showpos << mrrDelta << std::noshowpos << ")"
            << ",rec=" << recall << ",ndcg=" << ndcg << "(d=" << std::showpos << ndcgDelta
            << std::noshowpos << ")";
        parts.push_back(oss.str());
    }

    if (parts.empty()) {
        return "stage_metrics=unavailable";
    }

    std::ostringstream out;
    for (size_t i = 0; i < parts.size(); ++i) {
        if (i > 0) {
            out << "  ";
        }
        out << parts[i];
    }
    return out.str();
}

static double computeOptimizationObjective(const RetrievalMetrics& hybrid,
                                           const RetrievalMetrics& keyword,
                                           const QueryDiagnosticsSummary& hybridDiagnostics,
                                           double avgHybridQueryMs) {
    // Precision-first objective for machine-first navigation: keep top-K correctness high while
    // still rewarding rank quality and recall. Miss-stage penalties keep the loop focused on the
    // actual places where relevant documents are lost.
    const double quality = 0.32 * hybrid.mrr + 0.24 * hybrid.ndcgAtK + 0.24 * hybrid.precisionAtK +
                           0.12 * hybrid.recallAtK + 0.08 * hybrid.map;
    const double hybridGain = std::max(0.0, hybrid.mrr - keyword.mrr);
    const double regressionPenalty = computeHybridRegressionPenalty(hybrid, keyword);
    const double duplicatePenalty = computeDuplicatePenalty(hybrid);
    const double latencyPenalty = computeLatencyPenalty(avgHybridQueryMs);
    const double precisionFailurePenalty = computePrecisionFailurePenalty(hybridDiagnostics);
    return quality + 0.10 * hybridGain - regressionPenalty - duplicatePenalty - latencyPenalty -
           precisionFailurePenalty;
}

static void appendOptimizationResultJson(const fs::path& outputFile,
                                         const OptimizationRunResult& result) {
    std::ofstream out(outputFile, std::ios::out | std::ios::app);
    if (!out.is_open()) {
        spdlog::warn("[OptLoop] Failed to open results file: {}", outputFile.string());
        return;
    }

    json j;
    j["candidate"] = result.candidate.name;
    j["description"] = result.candidate.description;
    j["success"] = result.success;
    j["objective"] = result.objectiveScore;
    j["hybrid_eval_ms"] = result.hybridEvalMs;
    j["keyword_eval_ms"] = result.keywordEvalMs;
    j["search_engine"] = result.searchEngine;
    if (const char* embBackend = std::getenv("YAMS_EMBED_BACKEND"); embBackend && *embBackend) {
        j["embedding_backend"] = embBackend;
    } else {
        j["embedding_backend"] = "daemon";
    }
    j["vectors_db_bytes"] = result.vectorsDbBytes;
    j["vectors_wal_bytes"] = result.vectorsWalBytes;
    j["persisted_hnsw_nodes"] = result.persistedHnswNodes;
    j["persisted_hnsw_meta_rows"] = result.persistedHnswMetaRows;
    j["persisted_vec0_tables"] = result.persistedVec0Tables;
    j["persisted_vec0_rows"] = result.persistedVec0Rows;
    j["persisted_pq_codes"] = result.persistedPqCodes;
    j["persisted_pq_meta"] = result.persistedPqMeta;
    j["tuning_state"] = result.tuningState;
    j["tuning_reason"] = result.tuningReason;
    j["error"] = result.errorMessage;
    j["run_id"] = result.runId;
    j["debug_file"] = result.debugFile;
    j["trace_top_n"] = result.traceTopN;
    j["trace_component_top_n"] = result.traceComponentTopN;
    j["stage_trace_enabled"] = result.stageTraceEnabled;
    j["hybrid_keyword_mrr_delta"] = result.hybridMetrics.mrr - result.keywordMetrics.mrr;

    const double objectiveRegressionPenalty =
        computeHybridRegressionPenalty(result.hybridMetrics, result.keywordMetrics);
    const double objectiveDuplicatePenalty = computeDuplicatePenalty(result.hybridMetrics);
    const double objectivePrecisionFailurePenalty =
        computePrecisionFailurePenalty(result.hybridDiagnostics);
    j["objective_penalties"] = {
        {"hybrid_regression", objectiveRegressionPenalty},
        {"duplicate_rate", objectiveDuplicatePenalty},
        {"precision_failures", objectivePrecisionFailurePenalty},
    };

    j["hybrid"] = {
        {"mrr", result.hybridMetrics.mrr},
        {"recall_at_k", result.hybridMetrics.recallAtK},
        {"precision_at_k", result.hybridMetrics.precisionAtK},
        {"ndcg_at_k", result.hybridMetrics.ndcgAtK},
        {"map", result.hybridMetrics.map},
        {"duplicate_rate_at_k", result.hybridMetrics.duplicateRateAtK},
        {"num_queries", result.hybridMetrics.numQueries},
    };

    j["keyword"] = {
        {"mrr", result.keywordMetrics.mrr},
        {"recall_at_k", result.keywordMetrics.recallAtK},
        {"precision_at_k", result.keywordMetrics.precisionAtK},
        {"ndcg_at_k", result.keywordMetrics.ndcgAtK},
        {"map", result.keywordMetrics.map},
        {"duplicate_rate_at_k", result.keywordMetrics.duplicateRateAtK},
        {"num_queries", result.keywordMetrics.numQueries},
    };

    {
        auto sampleMean = [](const std::vector<double>& v) -> double {
            if (v.empty())
                return 0.0;
            double sum = 0.0;
            for (double x : v)
                sum += x;
            return sum / static_cast<double>(v.size());
        };
        auto meanSignal = [&](const std::string& key) -> double {
            auto it = result.hybridDiagnostics.tunerSignalSamples.find(key);
            return it == result.hybridDiagnostics.tunerSignalSamples.end() ? 0.0
                                                                           : sampleMean(it->second);
        };
        auto meanScoreMass = [&](const std::string& src) -> double {
            auto it = result.hybridDiagnostics.fusionSourceScoreMassSamples.find(src);
            return it == result.hybridDiagnostics.fusionSourceScoreMassSamples.end()
                       ? 0.0
                       : sampleMean(it->second);
        };
        const double denseMass = meanScoreMass("vector") + meanScoreMass("compressed_ann") +
                                 meanScoreMass("graph_vector") + meanScoreMass("entity_vector");
        const double lexicalMass =
            meanScoreMass("text") + meanScoreMass("graph_text") + meanScoreMass("path_tree");
        const double otherMass = meanScoreMass("kg") + meanScoreMass("tag") +
                                 meanScoreMass("metadata") + meanScoreMass("symbol");
        const double totalMass = denseMass + lexicalMass + otherMass;
        const double denseContrib = totalMass > 0.0 ? denseMass / totalMass : 0.0;
        const double bm25Contrib = totalMass > 0.0 ? lexicalMass / totalMass : 0.0;

        j["fusion_alpha"] = meanSignal("vector_weight");
        j["text_weight"] = meanSignal("text_weight");
        j["dense_contrib"] = denseContrib;
        j["bm25_contrib"] = bm25Contrib;
        j["other_contrib"] = totalMass > 0.0 ? otherMass / totalMass : 0.0;

        j["ngram_range_used"] = "3-5";
        j["idf_weighted"] = false;
    }

    j["hybrid_debug_summary"] = queryDiagnosticsToJson(result.hybridDiagnostics);
    j["keyword_debug_summary"] = queryDiagnosticsToJson(result.keywordDiagnostics);

    json env = json::object();
    for (const auto& setting : result.candidate.envOverrides) {
        if (setting.value.has_value()) {
            env[setting.key] = *setting.value;
        } else {
            env[setting.key] = nullptr;
        }
    }
    j["env_overrides"] = env;

    out << j.dump() << "\n";
}

static std::chrono::milliseconds defaultBenchQueryTimeout(const std::string& searchType) {
    if (searchType == "hybrid") {
        // Hybrid benchmark runs exercise graph rerank, ONNX reranking, and stage tracing.
        // The default 20s request timeout is too short for cold-ish benchmark slices and
        // causes partial JSONL output because timed-out queries are skipped entirely.
        return std::chrono::milliseconds{120000};
    }
    return std::chrono::milliseconds{20000};
}

static std::chrono::milliseconds configuredBenchQueryTimeout(const std::string& searchType) {
    if (const char* env = std::getenv("YAMS_BENCH_QUERY_TIMEOUT_MS")) {
        return std::chrono::milliseconds{
            static_cast<std::chrono::milliseconds::rep>(std::stoll(env))};
    }
    return defaultBenchQueryTimeout(searchType);
}

static void ingestStageRetrievalMetrics(QueryDiagnosticsSummary& summary,
                                        const std::map<std::string, std::string>& searchStats,
                                        const TestQuery& tq, int k) {
    static const std::vector<std::pair<std::string, std::string>> kStageDocIdStats = {
        {"pre_fusion", "trace_pre_fusion_doc_ids"},
        {"graphless_post_fusion", "trace_graphless_post_fusion_doc_ids"},
        {"post_fusion", "trace_post_fusion_doc_ids"},
        {"post_graph", "trace_post_graph_doc_ids"},
        {"final", "trace_final_doc_ids"},
    };

    for (const auto& [stage, statKey] : kStageDocIdStats) {
        auto it = searchStats.find(statKey);
        if (it == searchStats.end() || it->second.empty()) {
            continue;
        }
        auto rankedDocIds = splitTabList(it->second, static_cast<size_t>(std::max(0, k)));
        yams::bench::addStageMetricSample(summary.stageRetrievalMetrics[stage], rankedDocIds, tq,
                                          k);
    }
}

RetrievalMetrics evaluateQueries(yams::daemon::DaemonClient& client, const fs::path& corpusDir,
                                 const std::vector<TestQuery>& queries, int k,
                                 const std::string& searchType = "hybrid",
                                 QueryDiagnosticsSummary* diagnostics = nullptr,
                                 bool emitDebug = true,
                                 std::vector<double>* latencySamplesMs = nullptr,
                                 std::vector<TestQuery>* failedQueries = nullptr) {
    RetrievalMetrics metrics;
    metrics.numQueries = static_cast<int>(queries.size());
    double totalMRR = 0.0, totalRecall = 0.0, totalPrecision = 0.0, totalNDCG = 0.0, totalMAP = 0.0;

    std::uint64_t totalAttempts = 0;
    std::uint64_t streamingCount = 0;
    std::uint64_t fuzzyRetryCount = 0;
    std::uint64_t literalRetryCount = 0;
    std::uint64_t duplicateTopKCount = 0;
    std::uint64_t totalTopKCount = 0;

    for (std::size_t queryIndex = 0; queryIndex < queries.size(); ++queryIndex) {
        const auto& tq = queries[queryIndex];
        yams::cli::search_runner::DaemonSearchOptions opts;
        opts.query = tq.query;
        opts.searchType = searchType;
        opts.limit = static_cast<std::size_t>(k);
        const auto queryTimeout = configuredBenchQueryTimeout(searchType);
        opts.timeout = queryTimeout;
        opts.allowFuzzyRetry = false;
        opts.allowLiteralTextRetry = false;
        const bool benchDiagEnabled = []() -> bool {
            if (const char* env = std::getenv("YAMS_BENCH_DIAG"); env && std::string(env) == "1") {
                return true;
            }
            return false;
        }();
        const bool benchVerbose = []() -> bool {
            if (const char* env = std::getenv("YAMS_BENCH_VERBOSE"); env) {
                std::string value(env);
                std::transform(value.begin(), value.end(), value.begin(), [](char c) {
                    return static_cast<char>(std::tolower(static_cast<unsigned char>(c)));
                });
                return value == "1" || value == "true" || value == "yes" || value == "on";
            }
            return false;
        }();

        if (benchVerbose) {
            spdlog::debug("Executing search query: '{}'", tq.query);
        }
        // Wait at least as long as the query timeout, plus a small margin.
        // Using a shorter run_sync deadline can leave in-flight requests behind,
        // which can cascade into timeouts/backpressure across subsequent queries.
        auto waitBudget = std::chrono::duration_cast<std::chrono::milliseconds>(opts.timeout) +
                          std::chrono::seconds(10);
        if (waitBudget < std::chrono::seconds(10)) {
            waitBudget = std::chrono::seconds(10);
        }
        auto run = benchRunSync(
            yams::cli::search_runner::daemon_search(client, opts, benchUseStreamingSearch()),
            waitBudget);
        if (!run) {
            spdlog::warn("Search failed for query '{}': {}", tq.query, run.error().message);
            if (failedQueries) {
                failedQueries->push_back(tq);
            }
            DebugLogEntry failedEntry;
            failedEntry.query = tq.query;
            failedEntry.queryIndex = static_cast<int>(queryIndex);
            failedEntry.searchType = searchType;
            failedEntry.attempts = 0;
            failedEntry.usedStreaming = false;
            failedEntry.usedFuzzyFlag = false;
            failedEntry.usedLiteralFlag = false;
            failedEntry.usedFuzzyRetry = false;
            failedEntry.usedLiteralTextRetry = false;
            failedEntry.relevantDocIds.assign(tq.relevantDocIds.begin(), tq.relevantDocIds.end());
            failedEntry.relevantFiles.assign(tq.relevantFiles.begin(), tq.relevantFiles.end());
            failedEntry.diagnostics.push_back("search_error=" + run.error().message);
            failedEntry.diagnostics.push_back("searchType=" + opts.searchType);
            failedEntry.diagnostics.push_back("limit=" + std::to_string(opts.limit));
            failedEntry.diagnostics.push_back(
                "timeout_ms=" +
                std::to_string(
                    std::chrono::duration_cast<std::chrono::milliseconds>(opts.timeout).count()));
            const json relevantDecisionTrace = buildRelevantDecisionTrace(
                failedEntry.relevantDocIds, failedEntry.returnedDocIds, failedEntry.searchStats);
            failedEntry.extraFields["relevant_decision_trace"] = relevantDecisionTrace;
            if (emitDebug) {
                debugLogWriteJsonLine(failedEntry);
            }
            if (diagnostics) {
                ingestQueryDiagnostics(*diagnostics, failedEntry.searchStats, relevantDecisionTrace,
                                       true, false, false, -1);
            }
            continue;
        }

        totalAttempts += run.value().attempts;
        if (run.value().usedStreaming)
            streamingCount++;
        if (run.value().usedFuzzyRetry)
            fuzzyRetryCount++;
        if (run.value().usedLiteralTextRetry)
            literalRetryCount++;

        const auto& results = run.value().response.results;
        if (latencySamplesMs) {
            const auto latencyIt = run.value().response.searchStats.find("latency_ms");
            if (latencyIt != run.value().response.searchStats.end()) {
                try {
                    const double latencyMs = std::stod(latencyIt->second);
                    if (std::isfinite(latencyMs) && latencyMs >= 0.0) {
                        latencySamplesMs->push_back(latencyMs);
                    }
                } catch (const std::exception& e) {
                    if (benchVerbose) {
                        spdlog::debug("Ignoring malformed benchmark latency '{}': {}",
                                      latencyIt->second, e.what());
                    }
                }
            }
        }
        if (benchVerbose) {
            spdlog::debug("Search returned {} results for query '{}' (attempts={}, streaming={}, "
                          "fuzzy_retry={}, literal_retry={})",
                          results.size(), tq.query, run.value().attempts, run.value().usedStreaming,
                          run.value().usedFuzzyRetry, run.value().usedLiteralTextRetry);
        }

        // Detailed result logging for debugging retrieval quality
        if (benchDiagEnabled) {
            spdlog::debug("  [{}] Expected relevant: {} docs", searchType,
                          tq.relevantDocIds.size());
            for (size_t i = 0; i < std::min((size_t)5, results.size()); ++i) {
                const std::string filename = fs::path(results[i].path).filename().string();
                const std::string docId = yams::bench::canonicalResultDocId(tq, filename);
                const bool relevant = yams::bench::isRelevantDocForQuery(tq, docId);
                spdlog::debug("  [{}] Result {}: path='{}' docId='{}' score={:.4f} {}", searchType,
                              i, results[i].path, docId, results[i].score,
                              relevant ? "RELEVANT" : "");
            }
        }

        DebugLogEntry debugEntry;
        debugEntry.query = tq.query;
        debugEntry.queryIndex = static_cast<int>(queryIndex);
        debugEntry.searchType = searchType;
        debugEntry.attempts = run.value().attempts;
        debugEntry.usedStreaming = run.value().usedStreaming;
        debugEntry.usedFuzzyFlag = false;
        debugEntry.usedLiteralFlag = false;
        debugEntry.usedFuzzyRetry = run.value().usedFuzzyRetry;
        debugEntry.usedLiteralTextRetry = run.value().usedLiteralTextRetry;
        debugEntry.searchStats = run.value().response.searchStats;
        debugEntry.relevantDocIds.assign(tq.relevantDocIds.begin(), tq.relevantDocIds.end());
        debugEntry.relevantFiles.assign(tq.relevantFiles.begin(), tq.relevantFiles.end());

        if (benchDiagEnabled) {
            debugEntry.diagnostics.push_back("searchType=" + opts.searchType);
            debugEntry.diagnostics.push_back("limit=" + std::to_string(opts.limit));
            debugEntry.diagnostics.push_back(
                "timeout_ms=" +
                std::to_string(
                    std::chrono::duration_cast<std::chrono::milliseconds>(opts.timeout).count()));
        }

        for (size_t i = 0; i < std::min((size_t)k, results.size()); ++i) {
            debugEntry.returnedPaths.push_back(results[i].path);
            debugEntry.returnedScores.push_back(static_cast<float>(results[i].score));

            const std::string filename = fs::path(results[i].path).filename().string();
            debugEntry.returnedDocIds.push_back(yams::bench::canonicalResultDocId(tq, filename));
            totalTopKCount++;
        }

        const auto scoreSample = yams::bench::scoreRankedDocIds(tq, debugEntry.returnedDocIds, k);
        debugEntry.returnedGrades = scoreSample.retrievedGrades;
        for (const auto& docId : scoreSample.duplicateDocIds) {
            duplicateTopKCount++;
            debugEntry.diagnostics.push_back("duplicate_topk_doc=" + docId);
        }

        const json relevantDecisionTrace = buildRelevantDecisionTrace(
            debugEntry.relevantDocIds, debugEntry.returnedDocIds, debugEntry.searchStats);
        debugEntry.extraFields["relevant_decision_trace"] = relevantDecisionTrace;
        debugEntry.extraFields["query_metrics"] = {
            {"mrr", scoreSample.reciprocalRank},
            {"recall_at_k", scoreSample.recallAtK},
            {"precision_at_k", scoreSample.precisionAtK},
            {"ndcg_at_k", scoreSample.ndcgAtK},
            {"map", scoreSample.averagePrecision},
            {"first_relevant_rank", scoreSample.firstRelevantRank},
        };

        if (benchDiagEnabled && results.empty() && tq.useDocIds && !tq.relevantDocIds.empty()) {
            // Opt-in diagnostic: show a snippet of the relevant BEIR doc file(s).
            std::size_t printed = 0;
            for (const auto& docId : tq.relevantDocIds) {
                if (printed >= 2)
                    break;
                const fs::path p = corpusDir / (docId + ".txt");
                if (!fs::exists(p)) {
                    debugEntry.diagnostics.push_back("relevant_doc_missing=" + p.string());
                    continue;
                }
                std::ifstream in(p);

                if (!in.is_open()) {
                    debugEntry.diagnostics.push_back("relevant_doc_open_failed=" + p.string());
                    continue;
                }
                std::string snippet;
                snippet.resize(240);
                in.read(snippet.data(), static_cast<std::streamsize>(snippet.size()));
                snippet.resize(static_cast<std::size_t>(in.gcount()));
                for (auto& c : snippet) {
                    if (c == '\n' || c == '\r' || c == '\t')
                        c = ' ';
                }
                debugEntry.diagnostics.push_back("relevant_doc_snippet[" + docId + "]=" + snippet);
                ++printed;
            }
        }

        // Opt-in diagnostic: run a few "shadow" queries for failing cases.
        // This does not affect scoring; it only emits diagnostic entries.
        if (emitDebug && benchDiagEnabled && results.empty()) {
            // 1) Try a shorter query with a few salient tokens to test whether the full
            // sentence query is failing due to strict AND semantics / tokenization.
            std::istringstream iss(tq.query);
            std::string token;
            std::vector<std::string> picked;
            picked.reserve(3);
            while (iss >> token && picked.size() < 3) {
                // Strip trailing punctuation for the diagnostic query.
                while (!token.empty() && std::ispunct(static_cast<unsigned char>(token.back()))) {
                    token.pop_back();
                }
                if (token.size() < 4)
                    continue;
                picked.push_back(token);
            }

            if (!picked.empty()) {
                std::string diagQuery;
                for (size_t i = 0; i < picked.size(); ++i) {
                    if (i)
                        diagQuery += ' ';
                    diagQuery += picked[i];
                }

                yams::cli::search_runner::DaemonSearchOptions shadow;
                shadow.query = diagQuery;
                shadow.searchType = opts.searchType;
                shadow.limit = opts.limit;
                shadow.timeout = opts.timeout;
                shadow.allowFuzzyRetry = false;
                shadow.allowLiteralTextRetry = false;

                DebugLogEntry shadowEntry;
                shadowEntry.query = "__diag_shadow_query__";
                shadowEntry.queryIndex = static_cast<int>(queryIndex);
                shadowEntry.searchType = searchType;
                shadowEntry.relevantDocIds.assign(tq.relevantDocIds.begin(),
                                                  tq.relevantDocIds.end());
                shadowEntry.diagnostics.push_back("original_query=" + tq.query);
                shadowEntry.diagnostics.push_back("shadow_query=" + diagQuery);

                auto shadowRun = benchRunSync(
                    yams::cli::search_runner::daemon_search(client, shadow,
                                                            benchUseStreamingSearch()),
                    std::chrono::duration_cast<std::chrono::milliseconds>(shadow.timeout) +
                        std::chrono::seconds(10));
                if (shadowRun) {
                    shadowEntry.attempts = shadowRun.value().attempts;
                    shadowEntry.usedStreaming = shadowRun.value().usedStreaming;
                    shadowEntry.usedFuzzyRetry = shadowRun.value().usedFuzzyRetry;
                    shadowEntry.usedLiteralTextRetry = shadowRun.value().usedLiteralTextRetry;
                    shadowEntry.returnedDocIds.push_back(
                        "result_count=" +
                        std::to_string(shadowRun.value().response.results.size()));
                    for (size_t i = 0;
                         i < std::min<size_t>(5, shadowRun.value().response.results.size()); ++i) {
                        shadowEntry.returnedPaths.push_back(
                            shadowRun.value().response.results[i].path);
                    }
                } else {
                    shadowEntry.returnedDocIds.push_back("shadow_error=" +
                                                         shadowRun.error().message);
                }

                debugLogWriteJsonLine(shadowEntry);
            }
        }

        if (emitDebug) {
            debugLogWriteJsonLine(debugEntry);
        }

        if (diagnostics) {
            ingestQueryDiagnostics(*diagnostics, run.value().response.searchStats,
                                   relevantDecisionTrace, false, !results.empty(),
                                   scoreSample.hadDuplicateInTopK, scoreSample.firstRelevantRank);
            ingestStageRetrievalMetrics(*diagnostics, run.value().response.searchStats, tq, k);
        }

        totalMRR += scoreSample.reciprocalRank;
        totalRecall += scoreSample.recallAtK;
        totalPrecision += scoreSample.precisionAtK;
        totalMAP += scoreSample.averagePrecision;
        totalNDCG += scoreSample.ndcgAtK;
    }

    if (metrics.numQueries > 0) {
        metrics.mrr = totalMRR / metrics.numQueries;
        metrics.recallAtK = totalRecall / metrics.numQueries;
        metrics.precisionAtK = totalPrecision / metrics.numQueries;
        metrics.ndcgAtK = totalNDCG / metrics.numQueries;
        metrics.map = totalMAP / metrics.numQueries;
        if (totalTopKCount > 0) {
            metrics.duplicateRateAtK =
                static_cast<double>(duplicateTopKCount) / static_cast<double>(totalTopKCount);
        }

        spdlog::info("Search execution stats: queries={} total_attempts={} avg_attempts={:.2f} "
                     "streaming={} fuzzy_retries={} literal_retries={} duplicate_rate@k={:.4f}",
                     metrics.numQueries, totalAttempts,
                     static_cast<double>(totalAttempts) / metrics.numQueries, streamingCount,
                     fuzzyRetryCount, literalRetryCount, metrics.duplicateRateAtK);
    }
    return metrics;
}

RetrievalMetrics evaluateGrepQueries(yams::daemon::DaemonClient& client,
                                     const std::vector<TestQuery>& queries, int k) {
    RetrievalMetrics metrics;
    metrics.numQueries = static_cast<int>(queries.size());

    double totalMRR = 0.0;
    double totalRecall = 0.0;
    double totalPrecision = 0.0;
    double totalNDCG = 0.0;
    double totalMAP = 0.0;
    std::uint64_t totalTopKCount = 0;
    std::uint64_t duplicateTopKCount = 0;

    for (const auto& tq : queries) {
        yams::daemon::GrepRequest req;
        req.pattern = tq.query;
        req.literalText = true;
        req.pathsOnly = true;
        req.maxMatches = 1;
        req.useSession = false;

        const auto queryTimeout = configuredBenchQueryTimeout("grep");
        auto waitBudget = queryTimeout + std::chrono::seconds(10);
        if (waitBudget < std::chrono::seconds(10)) {
            waitBudget = std::chrono::seconds(10);
        }

        auto run = benchRunSync(client.grep(req), waitBudget);
        if (!run) {
            spdlog::warn("Grep failed for query '{}': {}", tq.query, run.error().message);
            continue;
        }

        std::vector<std::string> rankedDocIds;
        rankedDocIds.reserve(std::min<std::size_t>(static_cast<std::size_t>(std::max(0, k)),
                                                   run.value().pathsOnly.size()));
        for (size_t i = 0; i < std::min<std::size_t>(static_cast<std::size_t>(std::max(0, k)),
                                                     run.value().pathsOnly.size());
             ++i) {
            const std::string filename = fs::path(run.value().pathsOnly[i]).filename().string();
            rankedDocIds.push_back(yams::bench::canonicalResultDocId(tq, filename));
            totalTopKCount++;
        }

        const auto scoreSample = yams::bench::scoreRankedDocIds(tq, rankedDocIds, k);
        duplicateTopKCount += scoreSample.duplicateDocIds.size();
        totalMRR += scoreSample.reciprocalRank;
        totalRecall += scoreSample.recallAtK;
        totalPrecision += scoreSample.precisionAtK;
        totalMAP += scoreSample.averagePrecision;
        totalNDCG += scoreSample.ndcgAtK;
    }

    if (metrics.numQueries > 0) {
        const double queryCount = static_cast<double>(metrics.numQueries);
        metrics.mrr = totalMRR / queryCount;
        metrics.recallAtK = totalRecall / queryCount;
        metrics.precisionAtK = totalPrecision / queryCount;
        metrics.ndcgAtK = totalNDCG / queryCount;
        metrics.map = totalMAP / queryCount;
        if (totalTopKCount > 0) {
            metrics.duplicateRateAtK =
                static_cast<double>(duplicateTopKCount) / static_cast<double>(totalTopKCount);
        }
    }

    return metrics;
}

struct BenchFixture {
    struct SetupTimingMetrics {
        bool coldIngestPerformed = false;
        int64_t admissionMs = 0;
        int64_t storageReadyMs = 0;
        int64_t pipelineDrainMs = 0;
        int64_t searchabilityReadyMs = 0;
        int64_t enrichmentReadyMs = 0;
        bool vectorIndexPrepared = false;
        bool vectorIndexPersisted = false;
        bool vectorIndexReusableBefore = false;
        bool vectorIndexReusableAfter = false;
        bool vectorQueryReadyAfter = false;
        int64_t vectorIndexPrepareMs = 0;
        int64_t vectorIndexPersistMs = 0;
        int64_t vectorIndexReusableProbeMs = 0;
        std::uint64_t vectorIndexReusableProbeCount = 0;
        int64_t setupTotalMs = 0;
    };

    std::unique_ptr<DaemonHarness> harness;
    std::unique_ptr<ScopedEnvOverrides> scopedEnv;
    std::unique_ptr<ScopedEnvOverrides> pluginScopedEnv;
    std::unique_ptr<yams::daemon::DaemonClient> client;
    std::unique_ptr<CorpusGenerator> corpus;
    std::unique_ptr<BEIRCorpusLoader> beirCorpus;
    fs::path benchCorpusDir;
    fs::path warmDataDirPath;
    std::optional<BenchCacheMetadata> warmCacheMetadata;
    std::vector<TestQuery> queries;
    int corpusSize = 50, numQueries = 10, topK = 10;
    bool useBEIR = false;
    SyntheticCorpusMode syntheticCorpusMode = SyntheticCorpusMode::Generic;
    bool warmDataDir = false; // True when reusing a pre-ingested data directory
    SetupTimingMetrics setupTimings;
    std::string datasetName = "synthetic";
    std::string beirDatasetName; // Name of BEIR dataset (scifact, cqadupstack, etc.)

    bool useSyntheticCommunityCorpus() const {
        return syntheticCorpusMode == SyntheticCorpusMode::CommunityGraph;
    }

    std::string datasetDisplayName() const {
        if (useBEIR) {
            return beirDatasetName == "local-manifest" ? std::string("local manifest")
                                                       : beirDatasetName + " BEIR";
        }
        if (syntheticCorpusMode == SyntheticCorpusMode::CommunityGraph) {
            return "synthetic-community";
        }
        if (syntheticCorpusMode == SyntheticCorpusMode::HardLexical) {
            return "synthetic-hard";
        }
        return datasetName;
    }

    bool benchmarkSemanticNeighborSeedingEnabled() const {
        const char* raw = std::getenv("YAMS_BENCH_SEED_SEMANTIC_NEIGHBORS");
        if (!(raw && *raw)) {
            return false;
        }
        std::string value(raw);
        std::transform(value.begin(), value.end(), value.begin(),
                       [](unsigned char c) { return static_cast<char>(std::tolower(c)); });
        return value == "1" || value == "true" || value == "yes" || value == "on";
    }

    void seedSyntheticCommunityEdges() {
        if (!useSyntheticCommunityCorpus()) {
            return;
        }

        auto* daemon = harness ? harness->daemon() : nullptr;
        auto* serviceManager = daemon ? daemon->getServiceManager() : nullptr;
        auto metadataRepo = serviceManager ? serviceManager->getMetadataRepo() : nullptr;
        auto kgStore = metadataRepo ? metadataRepo->getKnowledgeGraphStore() : nullptr;
        if (!metadataRepo || !kgStore) {
            throw std::runtime_error(
                "Synthetic community corpus requires metadata and KG stores after ingest");
        }

        const std::array<std::string, 3> docNames = {
            "community_target.txt", "community_partner.txt", "community_rival.txt"};
        std::vector<std::int64_t> nodeIds;
        nodeIds.reserve(docNames.size());

        for (const auto& docName : docNames) {
            const auto docPath = (benchCorpusDir / docName).string();
            auto docResult = metadataRepo->findDocumentByExactPath(docPath);
            if (!docResult) {
                throw std::runtime_error("Failed to resolve synthetic community document " +
                                         docPath + ": " + docResult.error().message);
            }
            if (!docResult.value().has_value()) {
                throw std::runtime_error("Synthetic community document missing from metadata: " +
                                         docPath);
            }

            const auto& doc = *docResult.value();
            auto nodeIdResult = kgStore->ensureDocumentNode(doc.sha256Hash, doc.fileName);
            if (!nodeIdResult) {
                throw std::runtime_error("Failed to ensure synthetic community KG node: " +
                                         nodeIdResult.error().message);
            }
            nodeIds.push_back(nodeIdResult.value());
        }

        std::vector<metadata::KGEdge> edges;
        metadata::KGEdge forward;
        forward.srcNodeId = nodeIds[0];
        forward.dstNodeId = nodeIds[1];
        forward.relation = "semantic_neighbor";
        forward.weight = 1.0f;
        edges.push_back(forward);

        metadata::KGEdge reverse;
        reverse.srcNodeId = nodeIds[1];
        reverse.dstNodeId = nodeIds[0];
        reverse.relation = "semantic_neighbor";
        reverse.weight = 1.0f;
        edges.push_back(reverse);

        auto addEdgesResult = kgStore->addEdgesUnique(edges);
        if (!addEdgesResult) {
            throw std::runtime_error("Failed to seed synthetic community KG edges: " +
                                     addEdgesResult.error().message);
        }

        spdlog::info("Seeded synthetic community KG edges for {} documents", docNames.size());
    }

    bool seedBenchmarkSemanticNeighbors() {
        if (!benchmarkSemanticNeighborSeedingEnabled()) {
            return false;
        }

        auto* daemon = harness ? harness->daemon() : nullptr;
        auto* serviceManager = daemon ? daemon->getServiceManager() : nullptr;
        auto metadataRepo = serviceManager ? serviceManager->getMetadataRepo() : nullptr;
        auto kgStore = metadataRepo ? metadataRepo->getKnowledgeGraphStore() : nullptr;
        auto vectorDb = serviceManager ? serviceManager->getVectorDatabase() : nullptr;
        if (!metadataRepo || !kgStore) {
            throw std::runtime_error("Semantic benchmark seeding requires metadata and KG stores");
        }

        auto parseSizeEnv = [](const char* primary, const char* fallback,
                               std::size_t defaultValue) {
            for (const char* key : {primary, fallback}) {
                if (!key) {
                    continue;
                }
                if (const char* raw = std::getenv(key); raw && *raw) {
                    try {
                        return static_cast<std::size_t>(std::max(1, std::stoi(raw)));
                    } catch (...) {
                    }
                }
            }
            return defaultValue;
        };
        auto parseFloatEnv = [](const char* primary, const char* fallback, float defaultValue) {
            for (const char* key : {primary, fallback}) {
                if (!key) {
                    continue;
                }
                if (const char* raw = std::getenv(key); raw && *raw) {
                    try {
                        return std::clamp(std::stof(raw), 0.0f, 1.0f);
                    } catch (...) {
                    }
                }
            }
            return defaultValue;
        };
        auto parseBoolEnv = [](const char* key, bool defaultValue) {
            if (!(key && *key)) {
                return defaultValue;
            }
            if (const char* raw = std::getenv(key); raw && *raw) {
                std::string value(raw);
                std::transform(value.begin(), value.end(), value.begin(),
                               [](unsigned char c) { return static_cast<char>(std::tolower(c)); });
                return value == "1" || value == "true" || value == "yes" || value == "on";
            }
            return defaultValue;
        };

        std::string topologySource = "vector";
        if (const char* raw = std::getenv("YAMS_BENCH_TOPOLOGY_SOURCE"); raw && *raw) {
            topologySource = raw;
            std::transform(topologySource.begin(), topologySource.end(), topologySource.begin(),
                           [](unsigned char c) { return static_cast<char>(std::tolower(c)); });
        }
        if (topologySource == "lexical" || topologySource == "bm25") {
            topologySource = "fts5";
        }
        if (topologySource == "graph") {
            topologySource = "kg";
        }
        if (topologySource == "title" || topologySource == "heading") {
            topologySource = "header";
        }
        if (topologySource == "segment-keyphrase" || topologySource == "segmentkeyphrase") {
            topologySource = "segment_keyphrase";
        }
        if (topologySource != "vector" && topologySource != "fts5" &&
            topologySource != "keyphrase" && topologySource != "segment_keyphrase" &&
            topologySource != "kg" && topologySource != "gliner" && topologySource != "header" &&
            topologySource != "theme") {
            throw std::runtime_error("YAMS_BENCH_TOPOLOGY_SOURCE must be vector, fts5, "
                                     "keyphrase, segment_keyphrase, kg, gliner, header, or theme");
        }
        if (topologySource == "vector" && !vectorDb) {
            throw std::runtime_error("Vector topology-source seeding requires vector store");
        }

        const std::size_t semanticTopK =
            parseSizeEnv("YAMS_BENCH_SEED_SEMANTIC_TOPK", "YAMS_GRAPH_SEMANTIC_TOPK", 6);
        const float semanticThreshold = parseFloatEnv("YAMS_BENCH_SEED_SEMANTIC_THRESHOLD",
                                                      "YAMS_GRAPH_SEMANTIC_THRESHOLD", 0.30f);
        const float semanticWeightFloor =
            parseFloatEnv("YAMS_BENCH_SEED_SEMANTIC_WEIGHT_FLOOR", nullptr, 0.10f);
        // Off: mutual pairs only (the historical seeding). On: also one-way kNN edges, as the
        // daemon writes them; the connected engine's roads need those (see
        // buildSemanticNeighborSeedEdges).
        const auto seedingMode = parseBoolEnv("YAMS_BENCH_SEED_SEMANTIC_DIRECTED", false)
                                     ? yams::bench::SemanticNeighborSeeding::DirectedKnn
                                     : yams::bench::SemanticNeighborSeeding::MutualPairs;
        const bool seedQrelCommunities = parseBoolEnv("YAMS_BENCH_SEED_QREL_COMMUNITIES", false) &&
                                         useBEIR && static_cast<bool>(beirCorpus);
        const std::size_t qrelTopK = parseSizeEnv("YAMS_BENCH_SEED_QREL_TOPK", nullptr, 4);
        const std::size_t kgFeatureLimit =
            parseSizeEnv("YAMS_BENCH_SEED_KG_FEATURE_LIMIT", nullptr, 512);
        const std::size_t keyphraseFeatureLimit =
            parseSizeEnv("YAMS_BENCH_KEYPHRASE_FEATURE_LIMIT", nullptr, 16);
        const std::size_t keyphraseMaxDocumentFrequency =
            parseSizeEnv("YAMS_BENCH_KEYPHRASE_MAX_DF", nullptr, 64);
        const std::size_t segmentTokenBudget =
            parseSizeEnv("YAMS_BENCH_SEGMENT_TOKENS", nullptr, 192);
        const std::size_t segmentTokenOverlap =
            parseSizeEnv("YAMS_BENCH_SEGMENT_OVERLAP", nullptr, 32);
        const std::size_t segmentFeatureLimit =
            parseSizeEnv("YAMS_BENCH_SEGMENT_FEATURE_LIMIT", nullptr, 12);
        const std::size_t segmentMaxDocumentFrequency =
            parseSizeEnv("YAMS_BENCH_SEGMENT_MAX_DF", nullptr, keyphraseMaxDocumentFrequency);
        const std::size_t segmentMaxEdgesPerFeature =
            parseSizeEnv("YAMS_BENCH_SEGMENT_FEATURE_EDGE_BUDGET", nullptr, 64);
        const std::size_t topologyMaxComponentDocs =
            parseSizeEnv("YAMS_BENCH_TOPOLOGY_MAX_COMPONENT_DOCS", nullptr, 64);

        auto validateAndLogTopologyCertificate =
            [&](const yams::bench::BenchmarkTopologyConstructionCertificate& cert) {
                auto checkedCert = cert;
                checkedCert.gates.maxComponentDocs = topologyMaxComponentDocs;
                const auto validation =
                    yams::bench::validateTopologyConstructionCertificate(checkedCert);
                if (g_debugOut) {
                    DebugLogEntry certificateEntry;
                    certificateEntry.searchType = "benchmark_setup";
                    certificateEntry.extraFields = {
                        {"event", "topology_construction_certificate"},
                        {"topology_source", topologySource},
                        {"certificate", yams::bench::topologyConstructionCertificateToJson(
                                            checkedCert, validation)},
                    };
                    debugLogWriteJsonLine(certificateEntry);
                }
                if (!validation.ok) {
                    const std::string firstError =
                        validation.errors.empty()
                            ? "unknown topology construction certificate error"
                            : validation.errors.front();
                    throw std::runtime_error(
                        "Benchmark topology construction certificate failed: " + firstError);
                }
            };

        std::vector<std::string> documentPaths;
        if (useBEIR && beirCorpus) {
            documentPaths = beirCorpus->getDocumentPaths();
        } else if (corpus) {
            documentPaths.reserve(corpus->createdFiles.size());
            for (const auto& filename : corpus->createdFiles) {
                documentPaths.push_back((benchCorpusDir / filename).string());
            }
        }
        if (documentPaths.empty()) {
            throw std::runtime_error("Semantic benchmark seeding found no document paths");
        }

        struct DocSeedInfo {
            std::string hash;
            std::string benchmarkDocId;
            std::string text;
            std::string headerText;
            std::string themeText;
            std::vector<float> embedding;
            std::int64_t documentId = 0;
            std::int64_t nodeId = 0;
        };

        std::vector<DocSeedInfo> docs;
        docs.reserve(documentPaths.size());
        yams::crypto::SHA256Hasher contentHasher;
        std::size_t warmPathRebases = 0;

        auto trimCopy = [](std::string value) {
            const auto first = std::find_if_not(
                value.begin(), value.end(), [](unsigned char ch) { return std::isspace(ch) != 0; });
            const auto last = std::find_if_not(value.rbegin(), value.rend(), [](unsigned char ch) {
                                  return std::isspace(ch) != 0;
                              }).base();
            if (first >= last) {
                return std::string{};
            }
            return std::string(first, last);
        };
        auto deriveHeaderText = [&](std::string_view benchmarkDocId, std::string_view body,
                                    std::string_view fallbackName) {
            if (useBEIR && beirCorpus && !benchmarkDocId.empty()) {
                if (auto it = beirCorpus->dataset.documents.find(std::string(benchmarkDocId));
                    it != beirCorpus->dataset.documents.end()) {
                    auto title = trimCopy(it->second.title);
                    if (!title.empty()) {
                        return title;
                    }
                }
            }
            std::istringstream lines{std::string(body)};
            std::string line;
            while (std::getline(lines, line)) {
                line = trimCopy(line);
                if (line.empty()) {
                    continue;
                }
                while (!line.empty() && line.front() == '#') {
                    line.erase(line.begin());
                }
                line = trimCopy(line);
                if (!line.empty()) {
                    return line;
                }
            }
            return trimCopy(std::string(fallbackName));
        };

        std::unordered_set<std::string> topologyInputHashes;
        std::size_t duplicateContentDocuments = 0;
        for (const auto& docPath : documentPaths) {
            auto docResult = metadataRepo->findDocumentByExactPath(docPath);
            if (!docResult) {
                throw std::runtime_error("Failed to resolve benchmark document " + docPath + ": " +
                                         docResult.error().message);
            }
            auto resolvedDoc = std::move(docResult.value());
            // Content-addressed ingest stores identical files once (warm caches rebase paths,
            // and corpora such as nfcorpus contain duplicate texts), so fall back to the
            // content hash to find the surviving document.
            if (!resolvedDoc.has_value()) {
                const auto contentHash = contentHasher.hashFile(docPath);
                auto hashResult = metadataRepo->getDocumentByHash(contentHash);
                if (!hashResult) {
                    throw std::runtime_error("Failed to resolve benchmark document " + docPath +
                                             " by content hash: " + hashResult.error().message);
                }
                resolvedDoc = std::move(hashResult.value());
                if (resolvedDoc.has_value() && warmDataDir) {
                    ++warmPathRebases;
                }
            }
            if (!resolvedDoc.has_value()) {
                throw std::runtime_error("Benchmark document missing from metadata: " + docPath);
            }
            // A duplicate-content file resolves to a document already added as a topology input.
            if (!topologyInputHashes.insert(resolvedDoc->sha256Hash).second) {
                ++duplicateContentDocuments;
                continue;
            }

            const auto& doc = *resolvedDoc;
            std::vector<float> embedding;
            if (topologySource == "vector") {
                const auto vectors = vectorDb->getVectorsByDocument(doc.sha256Hash);
                if (vectors.empty()) {
                    continue;
                }

                const auto documentLevel = std::find_if(
                    vectors.begin(), vectors.end(), [](const yams::vector::VectorRecord& record) {
                        return record.level == yams::vector::EmbeddingLevel::DOCUMENT &&
                               !record.embedding.empty();
                    });
                const auto chosen =
                    (documentLevel != vectors.end() && !documentLevel->embedding.empty())
                        ? documentLevel
                        : std::find_if(vectors.begin(), vectors.end(),
                                       [](const yams::vector::VectorRecord& record) {
                                           return !record.embedding.empty();
                                       });
                if (chosen == vectors.end() || chosen->embedding.empty()) {
                    continue;
                }
                embedding = chosen->embedding;
            }

            std::string text;
            std::string headerText;
            std::string themeText;
            if (topologySource == "fts5" || topologySource == "keyphrase" ||
                topologySource == "segment_keyphrase" || topologySource == "header" ||
                topologySource == "theme") {
                auto contentResult = metadataRepo->getContent(doc.id);
                if (contentResult && contentResult.value().has_value()) {
                    text = contentResult.value()->contentText;
                }
                if (text.empty()) {
                    std::ifstream in(docPath, std::ios::binary);
                    if (in) {
                        std::ostringstream buffer;
                        buffer << in.rdbuf();
                        text = buffer.str();
                    }
                }
                if (text.empty()) {
                    continue;
                }
                headerText =
                    deriveHeaderText(fs::path(docPath).stem().string(), text, doc.fileName);
                themeText = headerText;
                const std::size_t snippetSize = std::min<std::size_t>(text.size(), 512);
                if (snippetSize > 0) {
                    if (!themeText.empty()) {
                        themeText.push_back('\n');
                    }
                    themeText.append(text.data(), snippetSize);
                }
                if (topologySource == "header" && headerText.empty()) {
                    continue;
                }
                if (topologySource == "theme" && themeText.empty()) {
                    continue;
                }
            }

            auto nodeIdResult = kgStore->ensureDocumentNode(doc.sha256Hash, doc.fileName);
            if (!nodeIdResult) {
                throw std::runtime_error("Failed to ensure benchmark semantic KG node: " +
                                         nodeIdResult.error().message);
            }
            docs.push_back({doc.sha256Hash, fs::path(docPath).stem().string(), text, headerText,
                            themeText, embedding, doc.id, nodeIdResult.value()});
        }
        if (duplicateContentDocuments > 0) {
            spdlog::info("Topology benchmark skipped {} duplicate-content documents",
                         duplicateContentDocuments);
        }
        if (warmPathRebases > 0) {
            spdlog::info("Resolved {} cloned warm-cache documents by stable content hash",
                         warmPathRebases);
        }

        if (docs.size() < 2) {
            spdlog::warn("Skipping {} topology-source benchmark seeding: only {} usable documents",
                         topologySource, docs.size());
            return false;
        }

        if ((topologySource == "kg" || topologySource == "gliner") && useBEIR && beirCorpus &&
            !beirCorpus->dataset.kgEntities.empty()) {
            std::unordered_map<std::string, const DocSeedInfo*> docByBenchmarkId;
            docByBenchmarkId.reserve(docs.size());
            for (const auto& doc : docs) {
                if (!doc.benchmarkDocId.empty()) {
                    docByBenchmarkId.emplace(doc.benchmarkDocId, &doc);
                }
            }

            std::vector<metadata::DocEntity> docEntities;
            std::vector<metadata::KGEdge> manifestEdges;
            std::size_t manifestEntitiesSeeded = 0;
            for (const auto& entity : beirCorpus->dataset.kgEntities) {
                const auto docIt = docByBenchmarkId.find(entity.docId);
                if (docIt == docByBenchmarkId.end()) {
                    continue;
                }
                const auto* doc = docIt->second;
                metadata::KGNode entityNode;
                entityNode.nodeKey = "bench:entity:" + entity.entityKey;
                entityNode.label = entity.label.empty() ? entity.entityKey : entity.label;
                entityNode.type = entity.type.empty() ? "benchmark_entity" : entity.type;
                entityNode.properties = json{
                    {"source", "benchmark_manifest"},
                    {"doc_id", entity.docId},
                    {"entity_key",
                     entity.entityKey}}.dump();
                auto entityNodeResult = kgStore->upsertNode(entityNode);
                if (!entityNodeResult) {
                    throw std::runtime_error(
                        "Failed to seed benchmark KG entity node for topology source: " +
                        entityNodeResult.error().message);
                }

                const float weight = std::clamp(entity.weight, 0.05F, 1.0F);
                metadata::DocEntity docEntity;
                docEntity.documentId = doc->documentId;
                docEntity.entityText = entity.label.empty() ? entity.entityKey : entity.label;
                docEntity.nodeId = entityNodeResult.value();
                docEntity.confidence = weight;
                docEntity.extractor =
                    entity.extractor.empty() ? "benchmark_manifest" : entity.extractor;
                docEntities.push_back(docEntity);

                metadata::KGEdge edge;
                edge.srcNodeId = entityNodeResult.value();
                edge.dstNodeId = doc->nodeId;
                edge.relation = entity.relation.empty() || entity.relation == "semantic_neighbor"
                                    ? "manifest_entity_of"
                                    : entity.relation;
                edge.weight = weight;
                edge.properties = json{{"source", "benchmark_manifest"},
                                       {"doc_id", entity.docId},
                                       {"entity_key", entity.entityKey}}
                                      .dump();
                manifestEdges.push_back(edge);
                ++manifestEntitiesSeeded;
            }

            if (!docEntities.empty()) {
                auto addDocEntitiesResult = kgStore->addDocEntities(docEntities);
                if (!addDocEntitiesResult) {
                    throw std::runtime_error(
                        "Failed to seed benchmark KG doc entities for topology source: " +
                        addDocEntitiesResult.error().message);
                }
            }
            if (!manifestEdges.empty()) {
                auto addEdgesResult = kgStore->addEdgesUnique(manifestEdges);
                if (!addEdgesResult) {
                    throw std::runtime_error(
                        "Failed to seed benchmark KG relation edges for topology source: " +
                        addEdgesResult.error().message);
                }
            }
            spdlog::info("Seeded {} manifest KG entity annotations and {} relation edges for "
                         "topology-source graph features",
                         manifestEntitiesSeeded, manifestEdges.size());
        }

        std::unordered_map<std::string, std::unordered_map<std::string, float>> neighborScores;
        neighborScores.reserve(docs.size());

        if (topologySource == "vector") {
            yams::vector::VectorSearchParams params;
            params.k = semanticTopK + 4;
            params.similarity_threshold = semanticThreshold;

            for (const auto& doc : docs) {
                const auto neighbors = vectorDb->searchSimilar(doc.embedding, params);
                auto& scores = neighborScores[doc.hash];
                for (const auto& rec : neighbors) {
                    if (rec.level != yams::vector::EmbeddingLevel::DOCUMENT) {
                        continue;
                    }
                    if (rec.document_hash.empty() || rec.document_hash == doc.hash) {
                        continue;
                    }
                    if (rec.relevance_score < semanticThreshold) {
                        continue;
                    }
                    auto [it, inserted] = scores.emplace(rec.document_hash, rec.relevance_score);
                    if (!inserted) {
                        it->second = std::max(it->second, rec.relevance_score);
                    }
                    if (scores.size() >= semanticTopK) {
                        break;
                    }
                }
            }
        } else if (topologySource == "keyphrase" || topologySource == "segment_keyphrase") {
            std::vector<yams::bench::KeyphraseTopologyDocument> keyphraseDocs;
            keyphraseDocs.reserve(docs.size());
            for (const auto& doc : docs) {
                keyphraseDocs.push_back({.documentHash = doc.hash, .text = doc.text});
            }
            yams::bench::BenchmarkTopologyConstructionCertificate certificate;
            std::vector<yams::bench::LexicalTopologyNeighbor> keyphraseNeighbors;
            if (topologySource == "segment_keyphrase") {
                keyphraseNeighbors = yams::bench::buildSegmentKeyphraseTopologyNeighbors(
                    keyphraseDocs, semanticTopK, semanticThreshold, segmentTokenBudget,
                    segmentTokenOverlap, segmentFeatureLimit, segmentMaxDocumentFrequency,
                    topologyMaxComponentDocs, segmentMaxEdgesPerFeature, true, &certificate);
            } else {
                keyphraseNeighbors = yams::bench::buildKeyphraseTopologyNeighbors(
                    keyphraseDocs, semanticTopK, semanticThreshold, keyphraseFeatureLimit,
                    keyphraseMaxDocumentFrequency, true, &certificate);
            }
            validateAndLogTopologyCertificate(certificate);
            for (const auto& neighbor : keyphraseNeighbors) {
                neighborScores[neighbor.sourceHash][neighbor.targetHash] = neighbor.score;
            }
        } else if (topologySource == "fts5" || topologySource == "header" ||
                   topologySource == "theme") {
            std::vector<yams::bench::LexicalTopologyDocument> lexicalDocs;
            lexicalDocs.reserve(docs.size());
            for (const auto& doc : docs) {
                std::string_view sourceText = doc.text;
                if (topologySource == "header") {
                    sourceText = doc.headerText;
                } else if (topologySource == "theme") {
                    sourceText = doc.themeText;
                }
                lexicalDocs.push_back({.documentHash = doc.hash, .text = std::string(sourceText)});
            }
            yams::bench::BenchmarkTopologyConstructionCertificate certificate;
            const auto lexicalNeighbors = yams::bench::buildLexicalTopologyNeighbors(
                lexicalDocs, semanticTopK, semanticThreshold, true, &certificate);
            validateAndLogTopologyCertificate(certificate);
            for (const auto& neighbor : lexicalNeighbors) {
                neighborScores[neighbor.sourceHash][neighbor.targetHash] = neighbor.score;
            }
        } else {
            const bool glinerOnly = topologySource == "gliner";
            std::vector<yams::bench::GraphTopologyDocument> graphDocs;
            graphDocs.reserve(docs.size());
            std::size_t docsWithGraphFeatures = 0;
            std::size_t docEntitiesScanned = 0;
            std::size_t graphEdgesScanned = 0;
            for (const auto& doc : docs) {
                std::unordered_map<std::int64_t, float> featureByNode;

                auto entityResult =
                    kgStore->getDocEntitiesForDocument(doc.documentId, kgFeatureLimit, 0);
                if (!entityResult) {
                    throw std::runtime_error(
                        "Failed to read KG doc entities for topology source: " +
                        entityResult.error().message);
                }
                docEntitiesScanned += entityResult.value().size();
                for (const auto& entity : entityResult.value()) {
                    if (glinerOnly) {
                        const auto extractor = entity.extractor.value_or(std::string{});
                        if (extractor.find("gliner") == std::string::npos &&
                            extractor.find("title_nl") == std::string::npos) {
                            continue;
                        }
                    }
                    if (!entity.nodeId.has_value() || entity.nodeId.value() <= 0 ||
                        entity.nodeId.value() == doc.nodeId) {
                        continue;
                    }
                    const float weight = std::clamp(entity.confidence.value_or(1.0F), 0.05F, 1.0F);
                    auto [it, inserted] = featureByNode.emplace(entity.nodeId.value(), weight);
                    if (!inserted) {
                        it->second = std::max(it->second, weight);
                    }
                }

                auto edgeResult =
                    kgStore->getEdgesBidirectional(doc.nodeId, std::nullopt, kgFeatureLimit);
                if (!edgeResult) {
                    throw std::runtime_error("Failed to read KG edges for topology source: " +
                                             edgeResult.error().message);
                }
                graphEdgesScanned += edgeResult.value().size();
                for (const auto& edge : edgeResult.value()) {
                    if (glinerOnly && edge.relation != "title_mentions" &&
                        edge.relation != "primary_topic_of" && edge.relation != "mentioned_in") {
                        continue;
                    }
                    if (edge.relation == "semantic_neighbor") {
                        continue;
                    }
                    const std::int64_t otherNodeId =
                        edge.srcNodeId == doc.nodeId ? edge.dstNodeId : edge.srcNodeId;
                    if (otherNodeId <= 0 || otherNodeId == doc.nodeId) {
                        continue;
                    }
                    const float weight = std::clamp(edge.weight, 0.05F, 1.0F);
                    auto [it, inserted] = featureByNode.emplace(otherNodeId, weight);
                    if (!inserted) {
                        it->second = std::max(it->second, weight);
                    }
                }

                yams::bench::GraphTopologyDocument graphDoc;
                graphDoc.documentHash = doc.hash;
                graphDoc.relatedNodes.reserve(featureByNode.size());
                for (const auto& [nodeId, weight] : featureByNode) {
                    graphDoc.relatedNodes.push_back({.nodeId = nodeId, .weight = weight});
                }
                if (!graphDoc.relatedNodes.empty()) {
                    ++docsWithGraphFeatures;
                }
                graphDocs.push_back(graphDoc);
            }
            spdlog::info("{} topology-source scanned {} doc-entity rows and {} doc-adjacent KG "
                         "edges; {} / {} documents had graph features",
                         topologySource, docEntitiesScanned, graphEdgesScanned,
                         docsWithGraphFeatures, graphDocs.size());
            yams::bench::BenchmarkTopologyConstructionCertificate certificate;
            const auto graphNeighbors = yams::bench::buildGraphTopologyNeighbors(
                graphDocs, semanticTopK, semanticThreshold, true, &certificate);
            validateAndLogTopologyCertificate(certificate);
            for (const auto& neighbor : graphNeighbors) {
                neighborScores[neighbor.sourceHash][neighbor.targetHash] = neighbor.score;
            }
        }

        std::unordered_map<std::string, std::int64_t> nodeIdByHash;
        nodeIdByHash.reserve(docs.size());
        std::unordered_map<std::string, std::string> hashByBenchmarkDocId;
        hashByBenchmarkDocId.reserve(docs.size());
        for (const auto& doc : docs) {
            nodeIdByHash.emplace(doc.hash, doc.nodeId);
            if (!doc.benchmarkDocId.empty()) {
                hashByBenchmarkDocId.emplace(doc.benchmarkDocId, doc.hash);
            }
        }

        std::vector<metadata::KGEdge> edges;
        std::size_t mutualEdges = 0;
        std::size_t oneWayEdges = 0;
        for (const auto& seed : yams::bench::buildSemanticNeighborSeedEdges(
                 neighborScores, semanticWeightFloor, seedingMode)) {
            const auto srcNodeIt = nodeIdByHash.find(seed.sourceHash);
            const auto dstNodeIt = nodeIdByHash.find(seed.targetHash);
            if (srcNodeIt == nodeIdByHash.end() || dstNodeIt == nodeIdByHash.end()) {
                continue;
            }
            metadata::KGEdge edge;
            edge.srcNodeId = srcNodeIt->second;
            edge.dstNodeId = dstNodeIt->second;
            edge.relation = "semantic_neighbor";
            edge.weight = seed.weight;
            edges.push_back(edge);
            (seed.mutual ? mutualEdges : oneWayEdges) += 1;
        }
        const std::size_t reciprocalPairs = mutualEdges / 2;

        std::size_t qrelPairs = 0;
        if (seedQrelCommunities) {
            std::unordered_map<std::string, std::unordered_map<std::string, int>> overlapCounts;
            for (auto it = beirCorpus->dataset.qrels.begin();
                 it != beirCorpus->dataset.qrels.end();) {
                const auto queryId = it->first;
                std::vector<std::string> docsForQuery;
                for (; it != beirCorpus->dataset.qrels.end() && it->first == queryId; ++it) {
                    if (it->second.score <= 0 || !hashByBenchmarkDocId.contains(it->second.docId)) {
                        continue;
                    }
                    docsForQuery.push_back(it->second.docId);
                }

                std::sort(docsForQuery.begin(), docsForQuery.end());
                docsForQuery.erase(std::unique(docsForQuery.begin(), docsForQuery.end()),
                                   docsForQuery.end());
                for (std::size_t i = 0; i < docsForQuery.size(); ++i) {
                    for (std::size_t j = i + 1; j < docsForQuery.size(); ++j) {
                        overlapCounts[docsForQuery[i]][docsForQuery[j]] += 1;
                        overlapCounts[docsForQuery[j]][docsForQuery[i]] += 1;
                    }
                }
            }

            std::set<std::pair<std::string, std::string>> addedPairs;
            for (const auto& [docId, neighbors] : overlapCounts) {
                const auto srcHashIt = hashByBenchmarkDocId.find(docId);
                if (srcHashIt == hashByBenchmarkDocId.end()) {
                    continue;
                }
                const auto srcNodeIt = nodeIdByHash.find(srcHashIt->second);
                if (srcNodeIt == nodeIdByHash.end()) {
                    continue;
                }

                std::vector<std::pair<std::string, int>> ranked(neighbors.begin(), neighbors.end());
                std::sort(ranked.begin(), ranked.end(), [](const auto& left, const auto& right) {
                    if (left.second != right.second) {
                        return left.second > right.second;
                    }
                    return left.first < right.first;
                });
                if (ranked.size() > qrelTopK) {
                    ranked.resize(qrelTopK);
                }

                for (const auto& [neighborDocId, sharedCount] : ranked) {
                    const auto dstHashIt = hashByBenchmarkDocId.find(neighborDocId);
                    if (dstHashIt == hashByBenchmarkDocId.end()) {
                        continue;
                    }
                    const auto dstNodeIt = nodeIdByHash.find(dstHashIt->second);
                    if (dstNodeIt == nodeIdByHash.end() || srcNodeIt->second == dstNodeIt->second) {
                        continue;
                    }

                    const auto ordered = std::minmax(srcHashIt->second, dstHashIt->second);
                    if (!addedPairs.insert(ordered).second) {
                        continue;
                    }

                    const float weight = std::clamp(
                        std::max(semanticWeightFloor, 0.25f * static_cast<float>(sharedCount)),
                        0.0f, 1.0f);
                    metadata::KGEdge forward;
                    forward.srcNodeId = srcNodeIt->second;
                    forward.dstNodeId = dstNodeIt->second;
                    forward.relation = "semantic_neighbor";
                    forward.weight = weight;
                    edges.push_back(forward);

                    metadata::KGEdge reverse;
                    reverse.srcNodeId = dstNodeIt->second;
                    reverse.dstNodeId = srcNodeIt->second;
                    reverse.relation = "semantic_neighbor";
                    reverse.weight = weight;
                    edges.push_back(reverse);
                    qrelPairs += 1;
                }
            }
        }

        if (edges.empty()) {
            spdlog::warn("{} topology-source benchmark seeding produced no reciprocal neighbors "
                         "(docs={}, topk={}, threshold={:.3f})",
                         topologySource, docs.size(), semanticTopK, semanticThreshold);
            return false;
        }

        auto deleteExistingResult = kgStore->deleteEdgesByRelation("semantic_neighbor");
        if (!deleteExistingResult) {
            throw std::runtime_error("Failed to clear pre-existing benchmark semantic KG edges: " +
                                     deleteExistingResult.error().message);
        }

        auto addEdgesResult = kgStore->addEdgesUnique(edges);
        if (!addEdgesResult) {
            throw std::runtime_error("Failed to seed benchmark semantic KG edges: " +
                                     addEdgesResult.error().message);
        }

        spdlog::info("Seeded {} {} topology-source neighbor pairs, {} one-way kNN edges and {} "
                     "qrel-neighbor pairs ({} directed edges) for benchmark corpus after clearing "
                     "{} prior semantic edges",
                     reciprocalPairs, topologySource, oneWayEdges, qrelPairs, edges.size(),
                     deleteExistingResult.value());
        return true;
    }

    void setup() {
        using SetupClock = std::chrono::steady_clock;
        const auto setupStartedAt = SetupClock::now();
        std::optional<SetupClock::time_point> coldIngestStartedAt;
        std::optional<SetupClock::time_point> admissionCompletedAt;
        const auto elapsedMsSince = [](SetupClock::time_point startedAt) {
            return std::chrono::duration_cast<std::chrono::milliseconds>(SetupClock::now() -
                                                                         startedAt)
                .count();
        };

        const char* env_dataset = std::getenv("YAMS_BENCH_DATASET");
        const char* env_debug_file = std::getenv("YAMS_BENCH_DEBUG_FILE");
        if (env_debug_file && std::strlen(env_debug_file) > 0) {
            g_debugFile =
                std::make_unique<std::ofstream>(env_debug_file, std::ios::out | std::ios::app);
            if (g_debugFile->is_open()) {
                g_debugOut = g_debugFile.get();
                spdlog::info("Benchmark debug logging enabled: {}", env_debug_file);
                DebugLogEntry startEntry;
                startEntry.searchType = "benchmark_setup";
                startEntry.extraFields = {
                    {"event", "setup"},
                    {"debug_file", env_debug_file},
                    {"topology_source", std::getenv("YAMS_BENCH_TOPOLOGY_SOURCE")
                                            ? std::getenv("YAMS_BENCH_TOPOLOGY_SOURCE")
                                            : "vector"},
                    {"seed_semantic_neighbors",
                     std::getenv("YAMS_BENCH_SEED_SEMANTIC_NEIGHBORS")
                         ? std::getenv("YAMS_BENCH_SEED_SEMANTIC_NEIGHBORS")
                         : "0"},
                    // Requested arm values; per-query search_stats carry the effective
                    // topology_representative_rule / topology_route_bq_rotation.
                    {"topology_representative_rule",
                     yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_REPRESENTATIVE_RULE")
                         .value_or("degree")},
                    {"topology_bq_rotation",
                     yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_BQ_ROTATION")
                         .value_or("none")},
                };
                debugLogWriteJsonLine(startEntry);
            } else {
                spdlog::warn("Failed to open YAMS_BENCH_DEBUG_FILE={} for writing", env_debug_file);
                g_debugFile.reset();
                g_debugOut = nullptr;
            }
        }

        const char* env_path = std::getenv("YAMS_BENCH_DATASET_PATH");
        const char* env_size = std::getenv("YAMS_BENCH_CORPUS_SIZE");
        const char* env_queries = std::getenv("YAMS_BENCH_NUM_QUERIES");
        const char* env_topk = std::getenv("YAMS_BENCH_TOPK");

        if (env_dataset) {
            std::string requestedDatasetName = env_dataset;
            // Supported BEIR datasets from
            // https://public.ukp.informatik.tu-darmstadt.de/thakur/BEIR/datasets/
            static const std::set<std::string> SUPPORTED_BEIR_DATASETS = {
                "scifact",        "nfcorpus",    "arguana",     "scidocs",       "fiqa",
                "quora",          "cqadupstack", "hotpotqa",    "fever",         "climate-fever",
                "dbpedia-entity", "trec-covid",  "touche-2020", "longmemeval_s", "local-manifest"};
            if (SUPPORTED_BEIR_DATASETS.count(requestedDatasetName) > 0) {
                useBEIR = true;
                beirDatasetName = requestedDatasetName;
                datasetName = requestedDatasetName;
                // Default to SearchTuner auto mode so benchmark reflects dynamic tuning behavior.
                // Keep explicit override support for controlled experiments:
                //   YAMS_BENCH_FORCE_TUNING_OVERRIDE=SCIENTIFIC
                const char* forcedOverride = std::getenv("YAMS_BENCH_FORCE_TUNING_OVERRIDE");
                const char* existingOverride = std::getenv("YAMS_TUNING_OVERRIDE");
                if (forcedOverride && std::strlen(forcedOverride) > 0) {
                    spdlog::info(
                        "Will set YAMS_TUNING_OVERRIDE={} via YAMS_BENCH_FORCE_TUNING_OVERRIDE "
                        "for dataset-backed benchmark ({})",
                        forcedOverride, requestedDatasetName);
                } else if (existingOverride && std::strlen(existingOverride) > 0) {
                    spdlog::info(
                        "Using pre-set YAMS_TUNING_OVERRIDE={} for dataset-backed benchmark ({})",
                        existingOverride, requestedDatasetName);
                } else {
                    spdlog::info("Using SearchTuner auto mode for dataset-backed benchmark ({})",
                                 requestedDatasetName);
                }
            } else if (requestedDatasetName == "synthetic-community") {
                datasetName = requestedDatasetName;
                syntheticCorpusMode = SyntheticCorpusMode::CommunityGraph;
            } else if (requestedDatasetName == "synthetic-hard") {
                datasetName = requestedDatasetName;
                syntheticCorpusMode = SyntheticCorpusMode::HardLexical;
            } else {
                spdlog::warn("Unknown dataset '{}', using synthetic. Supported: scifact, "
                             "cqadupstack, nfcorpus, synthetic-hard, local-manifest, etc.",
                             requestedDatasetName);
            }
        }

        if (env_size)
            corpusSize = std::stoi(env_size);
        if (env_queries)
            numQueries = std::stoi(env_queries);
        if (env_topk)
            topK = std::stoi(env_topk);

        std::vector<EnvSetting> benchmarkEnvOverrides;
        benchmarkEnvOverrides.reserve(24);
        auto addEnvDefault = [&](const char* key, const char* value) {
            const char* current = std::getenv(key);
            if (!(current && std::strlen(current) > 0)) {
                benchmarkEnvOverrides.push_back({key, std::string(value)});
            }
        };

        if (useSyntheticCommunityCorpus()) {
            corpusSize = 3;
            if (!(env_queries && *env_queries)) {
                numQueries = 1;
            }
            if (!(env_topk && *env_topk)) {
                topK = 1;
            }

            // Force the graph rerank stage fully on for the synthetic community A/B.
            // Tiny synthetic corpora are still classified as no_kg by the tuner, so enabling the
            // stage alone is not enough to produce an actual rerank window.
            addEnvDefault("YAMS_ENABLE_ENV_OVERRIDES", "1");
            addEnvDefault("YAMS_SEARCH_KG_WEIGHT", "0.00");
            addEnvDefault("YAMS_SEARCH_GRAPH_RERANK_TOPN", "3");
            addEnvDefault("YAMS_SEARCH_GRAPH_RERANK_WEIGHT", "1.00");
            addEnvDefault("YAMS_SEARCH_GRAPH_RERANK_MAX_BOOST", "1.00");
            addEnvDefault("YAMS_SEARCH_GRAPH_RERANK_MIN_SIGNAL", "0.01");
            addEnvDefault("YAMS_SEARCH_KG_MAX_RESULTS", "3");
            addEnvDefault("YAMS_SEARCH_GRAPH_SCORING_BUDGET_MS", "8");
        }

        auto optionalPositiveInt = [](const char* raw) -> std::optional<int> {
            if (!(raw && *raw)) {
                return std::nullopt;
            }
            const int parsed = std::stoi(raw);
            if (parsed <= 0) {
                return std::nullopt;
            }
            return parsed;
        };

        const std::optional<int> corpusLimit = optionalPositiveInt(env_size);
        const std::optional<int> queryLimit = optionalPositiveInt(env_queries);

        spdlog::info("Setting up RAG benchmark: {} dataset, {} docs, {} queries, k={}",
                     datasetDisplayName(), corpusSize, numQueries, topK);

        // PBI-05b: Create summary log file for important embedding metrics
        fs::path summaryLogPath = fs::temp_directory_path() / "yams_bench_summary.log";
        std::ofstream summaryLog(summaryLogPath, std::ios::trunc);
        if (summaryLog) {
            auto now = std::chrono::system_clock::now();
            auto time_t_now = std::chrono::system_clock::to_time_t(now);
            summaryLog << "=== YAMS Retrieval Quality Benchmark ===" << std::endl;
            summaryLog << "Started: " << std::ctime(&time_t_now);
            summaryLog << "Dataset: " << datasetDisplayName() << std::endl;
            summaryLog << "Corpus size: " << corpusSize << std::endl;
            summaryLog << "Num queries: " << numQueries << std::endl;
            summaryLog << "Top K: " << topK << std::endl;
            summaryLog << std::endl;
            summaryLog.flush();
        }
        spdlog::info("Summary log: {}", summaryLogPath.string());

        const char* disableVectors = std::getenv("YAMS_DISABLE_VECTORS");
        bool vectorsDisabled = disableVectors && std::string(disableVectors) == "1";
        const bool forceMockEmbeddings = forceMockEmbeddingsForBench();

        auto envFlagEnabled = [](const char* value) -> bool {
            if (!value) {
                return false;
            }
            std::string normalized(value);
            std::transform(normalized.begin(), normalized.end(), normalized.begin(), [](char c) {
                return static_cast<char>(std::tolower(static_cast<unsigned char>(c)));
            });
            return normalized == "1" || normalized == "true" || normalized == "yes" ||
                   normalized == "on";
        };

        if (useBEIR) {
            const char* forcedOverride = std::getenv("YAMS_BENCH_FORCE_TUNING_OVERRIDE");
            if (forcedOverride && std::strlen(forcedOverride) > 0) {
                benchmarkEnvOverrides.push_back({"YAMS_ENABLE_ENV_OVERRIDES", std::string("1")});
                benchmarkEnvOverrides.push_back(
                    {"YAMS_TUNING_OVERRIDE", std::string(forcedOverride)});
            }
        }

        // Benchmark determinism defaults (can still be overridden by explicit env values).
        // Real-ingest graph validation needs the post-ingest rebuild so search tuning sees the
        // final corpus stats instead of the startup-empty corpus.
        addEnvDefault("YAMS_DISABLE_SEARCH_REBUILDS", "0");
        addEnvDefault("YAMS_SEARCH_WAIT_FOR_CONCEPTS", "1");
        addEnvDefault("YAMS_HNSW_RANDOM_SEED", "42");
        addEnvDefault("YAMS_HNSW_PARALLEL_BUILD_THRESHOLD", "0");
        // Use higher concurrency for embedding/extraction to reduce ingestion time.
        // HNSW seed + wait-for-concepts provide sufficient determinism for ranking;
        // single-threaded embedding only added wall-clock cost without improving reproducibility.
        addEnvDefault("YAMS_POST_EMBED_CONCURRENT", "4");
        addEnvDefault("YAMS_POST_EXTRACTION_CONCURRENT", "4");
        addEnvDefault("YAMS_POST_KG_CONCURRENT", "1");
        addEnvDefault("YAMS_POST_TITLE_CONCURRENT", "1");

        // Retrieval-quality benchmark default: use Simeon's built-in embedding backend. This avoids
        // loading ONNX Runtime on the common benchmark path; operators can still request the legacy
        // ONNX/ORT path with YAMS_BENCH_EMBED_BACKEND=onnx or YAMS_EMBED_BACKEND=onnx.
        if (const char* benchEmbedBackend = std::getenv("YAMS_BENCH_EMBED_BACKEND");
            benchEmbedBackend && *benchEmbedBackend) {
            benchmarkEnvOverrides.push_back({"YAMS_EMBED_BACKEND", std::string(benchEmbedBackend)});
        } else {
            addEnvDefault("YAMS_EMBED_BACKEND", "simeon");
        }

        // Adaptive sub-batch tuning: the default 15s warning threshold causes premature
        // batch-cap collapse (8→4→1) on machines where ONNX inference is legitimately slow.
        // Raise to 60s so the adaptive logic only shrinks on true stalls, not normal latency.
        addEnvDefault("YAMS_EMBED_SUBBATCH_WARN_MS", "60000");

        // Benchmark default: graph rerank is ON unless explicitly overridden.
        // Canonical env key used by SearchEngineBuilder is YAMS_SEARCH_ENABLE_GRAPH_RERANK.
        const char* graphRerankCanonical = std::getenv("YAMS_SEARCH_ENABLE_GRAPH_RERANK");
        if (!(graphRerankCanonical && *graphRerankCanonical)) {
            benchmarkEnvOverrides.push_back({"YAMS_SEARCH_ENABLE_GRAPH_RERANK", std::string("1")});
            graphRerankCanonical = "1";
        }

        if (env_debug_file && std::strlen(env_debug_file) > 0) {
            addEnvDefault("YAMS_SEARCH_STAGE_TRACE", "1");
            const int traceTopNDefault =
                parseIntEnvOrDefault("YAMS_BENCH_TRACE_TOP_N", 50, 1, 10000);
            addEnvDefault("YAMS_SEARCH_STAGE_TRACE_TOP_N",
                          std::to_string(traceTopNDefault).c_str());
            const int traceComponentDefault = parseIntEnvOrDefault(
                "YAMS_BENCH_TRACE_COMPONENT_TOP_N", std::min(traceTopNDefault, 50), 1, 10000);
            addEnvDefault("YAMS_SEARCH_STAGE_TRACE_COMPONENT_TOP_N",
                          std::to_string(traceComponentDefault).c_str());
        }

        const bool graphRerankRequested = envFlagEnabled(graphRerankCanonical);
        std::optional<bool> explicitRequireKgReady;
        if (const char* envRequireKgReady = std::getenv("YAMS_BENCH_REQUIRE_KG_READY");
            envRequireKgReady && *envRequireKgReady) {
            explicitRequireKgReady = envFlagEnabled(envRequireKgReady);
        }
        const auto kgReadinessPolicy = yams::search::resolveBenchmarkKgReadinessPolicy(
            graphRerankRequested, explicitRequireKgReady, useBEIR);
        const bool requireKgReady =
            kgReadinessPolicy != yams::search::BenchmarkKgReadinessPolicy::Skip;

        scopedEnv = std::make_unique<ScopedEnvOverrides>(benchmarkEnvOverrides);

        spdlog::info("[Bench] KG readiness policy: {} (graph_rerank_requested={}, beir={}, "
                     "explicit_override={})",
                     yams::search::benchmarkKgReadinessPolicyToString(kgReadinessPolicy),
                     graphRerankRequested ? "true" : "false", useBEIR ? "true" : "false",
                     explicitRequireKgReady.has_value()
                         ? (*explicitRequireKgReady ? "true" : "false")
                         : "none");

        fs::path datasetPathForMetadata = env_path ? fs::path(env_path) : fs::path();
        Result<BEIRDataset> preparedBeirDataset =
            Error{ErrorCode::Unknown, "BEIR dataset not requested"};
        if (useBEIR) {
            preparedBeirDataset = selectBenchmarkBEIRDataset(
                beirDatasetName, datasetPathForMetadata, corpusLimit, queryLimit);
            if (!preparedBeirDataset) {
                throw std::runtime_error("Failed to load BEIR dataset: " +
                                         preparedBeirDataset.error().message);
            }
            corpusSize = static_cast<int>(preparedBeirDataset.value().documents.size());
            numQueries = static_cast<int>(preparedBeirDataset.value().queries.size());
        }

        BenchCacheMetadata expectedCacheMetadata;
        expectedCacheMetadata.dataset = useBEIR ? beirDatasetName : datasetName;
        expectedCacheMetadata.datasetPath = canonicalPathOrEmpty(datasetPathForMetadata);
        expectedCacheMetadata.corpusSize = corpusSize;
        expectedCacheMetadata.numQueries = numQueries;
        expectedCacheMetadata.topK = topK;
        expectedCacheMetadata.useBEIR = useBEIR;
        expectedCacheMetadata.vectorsDisabled = vectorsDisabled;
        expectedCacheMetadata.requireKgReady = requireKgReady;
        expectedCacheMetadata.graphRerankRequested = graphRerankRequested;
        expectedCacheMetadata.searchEngine =
            std::string(yams::vector::vectorSearchEngineName(benchmarkVectorSearchEngine()));
        expectedCacheMetadata.expectedDocs = corpusSize;
        expectedCacheMetadata.expectedQueries = numQueries;

        spdlog::info("[Bench] Effective graph rerank env: YAMS_SEARCH_ENABLE_GRAPH_RERANK={}",
                     graphRerankCanonical ? graphRerankCanonical : "<unset>");
        spdlog::info(
            "[Bench] Determinism envs: YAMS_DISABLE_SEARCH_REBUILDS={} "
            "YAMS_SEARCH_WAIT_FOR_CONCEPTS={} YAMS_HNSW_RANDOM_SEED={} "
            "YAMS_HNSW_PARALLEL_BUILD_THRESHOLD={} YAMS_POST_EMBED_CONCURRENT={} "
            "YAMS_POST_EXTRACTION_CONCURRENT={} YAMS_POST_KG_CONCURRENT={}",
            std::getenv("YAMS_DISABLE_SEARCH_REBUILDS")
                ? std::getenv("YAMS_DISABLE_SEARCH_REBUILDS")
                : "<unset>",
            std::getenv("YAMS_SEARCH_WAIT_FOR_CONCEPTS")
                ? std::getenv("YAMS_SEARCH_WAIT_FOR_CONCEPTS")
                : "<unset>",
            std::getenv("YAMS_HNSW_RANDOM_SEED") ? std::getenv("YAMS_HNSW_RANDOM_SEED") : "<unset>",
            std::getenv("YAMS_HNSW_PARALLEL_BUILD_THRESHOLD")
                ? std::getenv("YAMS_HNSW_PARALLEL_BUILD_THRESHOLD")
                : "<unset>",
            std::getenv("YAMS_POST_EMBED_CONCURRENT") ? std::getenv("YAMS_POST_EMBED_CONCURRENT")
                                                      : "<unset>",
            std::getenv("YAMS_POST_EXTRACTION_CONCURRENT")
                ? std::getenv("YAMS_POST_EXTRACTION_CONCURRENT")
                : "<unset>",
            std::getenv("YAMS_POST_KG_CONCURRENT") ? std::getenv("YAMS_POST_KG_CONCURRENT")
                                                   : "<unset>");

        const bool embedBackendSimeon = [] {
            const char* v = std::getenv("YAMS_EMBED_BACKEND");
            return v && std::string{v} == "simeon";
        }();

        DaemonHarness::Options harnessOptions;
        harnessOptions.isolateState = true;
        harnessOptions.useMockModelProvider = vectorsDisabled || forceMockEmbeddings;
        harnessOptions.autoLoadPlugins =
            !vectorsDisabled && !forceMockEmbeddings && !embedBackendSimeon;
        harnessOptions.configureModelPool = !vectorsDisabled && !forceMockEmbeddings;
        harnessOptions.modelPoolLazyLoading = false;
        harnessOptions.pluginDirStrict =
            !vectorsDisabled && !forceMockEmbeddings && !embedBackendSimeon;
        if (embedBackendSimeon) {
            harnessOptions.enableModelProvider = true;
            harnessOptions.useMockModelProvider = false;
        }

        // YAMS_BENCH_DATA_DIR: reuse a pre-ingested data directory to skip
        // corpus ingestion + embedding wait on repeated benchmark runs.
        // YAMS_BENCH_WARM_CACHE_DIR: like YAMS_BENCH_DATA_DIR, but validates a metadata file and
        // auto-writes one after a cold run so repeated full-corpus benchmarks are practical.
        const char* envWarmCacheDir = std::getenv("YAMS_BENCH_WARM_CACHE_DIR");
        const char* envDataDir = std::getenv("YAMS_BENCH_DATA_DIR");
        if (envWarmCacheDir && *envWarmCacheDir) {
            fs::path cacheDir = fs::path(envWarmCacheDir);
            warmDataDirPath = cacheDir;
            if (fs::exists(cacheDir)) {
                auto metadataResult = readBenchCacheMetadata(cacheDir);
                if (metadataResult) {
                    const auto& cachedMetadata = metadataResult.value();
                    std::string mismatchReason;
                    if (benchCacheMatches(expectedCacheMetadata, cachedMetadata, &mismatchReason)) {
                        harnessOptions.dataDir = cacheDir;
                        warmDataDir = true;
                        warmCacheMetadata = cachedMetadata;
                        spdlog::info(
                            "[Bench] Reusing warm cache dir: {} (status={}, embedded_docs={}, "
                            "vectors={})",
                            cacheDir.string(), cachedMetadata.status, cachedMetadata.embeddedDocs,
                            cachedMetadata.vectorCount);
                    } else {
                        std::error_code removeEc;
                        const bool canResumePartial = cachedMetadata.status == "partial" &&
                                                      mismatchReason == "cache status not reusable";
                        if (!canResumePartial) {
                            fs::remove_all(cacheDir, removeEc);
                            if (removeEc) {
                                spdlog::warn("[Bench] Failed to clear stale warm cache dir {}: {}",
                                             cacheDir.string(), removeEc.message());
                            }
                        }
                        harnessOptions.dataDir = cacheDir;
                        if (canResumePartial) {
                            warmDataDir = true;
                            warmCacheMetadata = metadataResult.value();
                            spdlog::warn(
                                "[Bench] Warm cache dir {} is partially primed; reusing it "
                                "to resume embedding completion",
                                cacheDir.string());
                        } else {
                            spdlog::warn(
                                "[Bench] Warm cache dir {} metadata mismatch ({}); running "
                                "cold and refreshing cache",
                                cacheDir.string(), mismatchReason);
                        }
                    }
                } else {
                    harnessOptions.dataDir = cacheDir;
                    spdlog::warn("[Bench] Warm cache dir {} missing/invalid metadata ({}); "
                                 "running cold and refreshing cache",
                                 cacheDir.string(), metadataResult.error().message);
                }
            } else {
                harnessOptions.dataDir = cacheDir;
                spdlog::info("[Bench] Warm cache dir {} does not exist yet; cold run will create "
                             "it",
                             cacheDir.string());
            }
        } else if (envDataDir && *envDataDir) {
            fs::path dataDirPath(envDataDir);
            if (fs::exists(dataDirPath)) {
                harnessOptions.dataDir = dataDirPath;
                warmDataDir = true;
                warmDataDirPath = dataDirPath;
                spdlog::info("[Bench] Reusing warm data dir: {} (skip ingestion + embed wait)",
                             dataDirPath.string());
            } else {
                spdlog::warn("[Bench] YAMS_BENCH_DATA_DIR={} does not exist, ignoring", envDataDir);
            }
        }

        if (!vectorsDisabled && !forceMockEmbeddings) {
            bool resetPluginTrustFile = harnessOptions.dataDir.has_value();
            bool useIsolatedBenchmarkConfig = true;
            const char* topologyModeEnv = std::getenv("YAMS_BENCH_TOPOLOGY_MODE");
            const bool topologyDisabled =
                topologyModeEnv && std::string_view{topologyModeEnv} == "disabled";
            const char* topologyEngineEnv = std::getenv("YAMS_BENCH_TOPOLOGY_ENGINE");
            const char* topologyRepresentativesEnv =
                std::getenv("YAMS_BENCH_TOPOLOGY_ROUTING_REPRESENTATIVES");
            const char* topologyBoundarySpillEnv =
                std::getenv("YAMS_BENCH_TOPOLOGY_BOUNDARY_SPILL");
            const char* topologyRepresentativeLimitEnv =
                std::getenv("YAMS_BENCH_TOPOLOGY_ROUTE_REPRESENTATIVE_LIMIT");
            const char* topologyAnnCandidateLimitEnv =
                std::getenv("YAMS_BENCH_TOPOLOGY_ROUTE_ANN_CANDIDATE_LIMIT");
            const auto envSet = [](const std::optional<std::string>& value) {
                return value.has_value() && !value->empty();
            };
            const auto topologyRoadHopsEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_ROAD_HOPS");
            const auto topologyRoadBeamWidthEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_ROAD_BEAM_WIDTH");
            const auto topologyRoadWalkWindowEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_ROAD_WALK_WINDOW");
            const auto topologyRoadMaxPerClusterEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_ROAD_MAX_PER_CLUSTER");
            const auto topologyRoadOrderEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_ROAD_ORDER");
            const auto topologyBqCandidateLimitEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_ROUTE_BQ_CANDIDATE_LIMIT");
            const auto topologyBqPrefixDimEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_ROUTE_BQ_PREFIX_DIM");
            const auto topologyBqRotationEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_BQ_ROTATION");
            const auto topologyRepresentativeRuleEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_REPRESENTATIVE_RULE");
            const auto topologySgcHopsEnv =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_SGC_HOPS");
            const auto simeonOuterMaxSimEnv =
                yams::config::getenv_optional("YAMS_BENCH_SIMEON_OUTER_MAXSIM");
            const auto graphCommunitySourceEnv =
                yams::config::getenv_optional("YAMS_BENCH_GRAPH_COMMUNITY_SOURCE");
            const char* topologyExpansionOutputLimitEnv =
                std::getenv("YAMS_BENCH_TOPOLOGY_EXPANSION_OUTPUT_LIMIT");
            const char* topologyGraphWeightedSeedRankingEnv =
                std::getenv("YAMS_BENCH_TOPOLOGY_GRAPH_WEIGHTED_SEED_RANKING");
            const auto hasBenchmarkSetting = [](const char* name) {
                const char* value = std::getenv(name);
                return value && *value;
            };
            const bool writeTopologyAdmissionConfig =
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_FINGERPRINT") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_QUERIES") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_PROTECTED_CANDIDATES") ||
                hasBenchmarkSetting(
                    "YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_MISSED_PROTECTED_CANDIDATES") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_MIN_CALIBRATION_QUERIES") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_MAX_MISSES_PER_THOUSAND") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_MIN_BOUNDARY_MARGIN") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_MIN_SEED_HITS") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_WORK_MAX_ROWS_VISITED") ||
                hasBenchmarkSetting(
                    "YAMS_BENCH_TOPOLOGY_ROUTE_WORK_MAX_EXACT_DISTANCE_EVALUATIONS") ||
                hasBenchmarkSetting("YAMS_BENCH_TOPOLOGY_ROUTE_WORK_MAX_ANN_CANDIDATES");
            const bool writeTopologyEngineConfig =
                (topologyEngineEnv && *topologyEngineEnv) ||
                (topologyRepresentativesEnv && *topologyRepresentativesEnv) ||
                (topologyBoundarySpillEnv && *topologyBoundarySpillEnv) ||
                envSet(topologySgcHopsEnv) || envSet(topologyRepresentativeRuleEnv) ||
                envSet(topologyRoadMaxPerClusterEnv) || envSet(topologyRoadOrderEnv);
            const bool writeTopologyRouteConfig =
                yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_VECTOR_POLICY").has_value() ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_ROUTE_SCORING") != nullptr) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_SPARSE_DENSE_ALPHA") != nullptr) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_MIN_ROUTE_SCORE") != nullptr) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_MEDOID_ONLY_EXPANSION") != nullptr) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_MIN_CLUSTERS") != nullptr) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_MAX_SEED_DOCUMENTS") != nullptr) ||
                envSet(topologyRoadHopsEnv) || envSet(topologyRoadBeamWidthEnv) ||
                envSet(topologyRoadWalkWindowEnv) ||
                (topologyRepresentativeLimitEnv && *topologyRepresentativeLimitEnv) ||
                (topologyAnnCandidateLimitEnv && *topologyAnnCandidateLimitEnv) ||
                envSet(topologyBqCandidateLimitEnv) || envSet(topologyBqPrefixDimEnv) ||
                envSet(topologyBqRotationEnv) || envSet(graphCommunitySourceEnv) ||
                (topologyExpansionOutputLimitEnv && *topologyExpansionOutputLimitEnv) ||
                (topologyGraphWeightedSeedRankingEnv && *topologyGraphWeightedSeedRankingEnv) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_ADAPTIVE_PROBE_SCORE_GAP") != nullptr) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_NARROW_MIN_BOUNDARY_MARGIN") != nullptr) ||
                (std::getenv("YAMS_BENCH_TOPOLOGY_EXPANSION") != nullptr) ||
                (std::getenv("YAMS_SEARCH_TOPOLOGY_EXPANSION_SOURCE") != nullptr) ||
                writeTopologyAdmissionConfig;

            // Select a plugin root that satisfies the plugins the benchmark enables.
            // Preferring the first ONNX-capable tree can silently disable entity extraction
            // when that tree lacks the Glint plugin.
            const bool enableGlintPlugin =
                !embedBackendSimeon || envTruthy(std::getenv("YAMS_BENCH_ENABLE_GLINT"));
            std::string glinerModelPath;
            if (enableGlintPlugin) {
                glinerModelPath = discoverGlinerModelPath();
            } else {
                spdlog::info("Simeon benchmark path: Glint/GLiNER disabled by default");
            }
            const bool needsGlintPlugin = !glinerModelPath.empty();
            const bool needsOnnxPlugin = !embedBackendSimeon;
            const char* envPluginDir = std::getenv("YAMS_PLUGIN_DIR");
            if (envPluginDir) {
                harnessOptions.pluginDir = fs::path(envPluginDir);
            } else {
                const fs::path cwd = fs::current_path();
                const fs::path installedPluginDir = fs::path("/opt/homebrew/lib/yams/plugins");
                const fs::path installedOnnxPlugin =
                    installedPluginDir / "libyams_onnx_plugin.dylib";
                const fs::path installedGlintPlugin = installedPluginDir / "yams_glint.dylib";
                const fs::path localPluginDir = cwd / "plugins";
                const fs::path localOnnxPlugin =
                    localPluginDir / "onnx" / "libyams_onnx_plugin.dylib";
                const fs::path localGlintPlugin = localPluginDir / "glint" / "yams_glint.dylib";

                const fs::path root = cwd;
                const fs::path nosanPluginDir = root / "builddir-nosan" / "plugins";
                const fs::path nosanOnnxPlugin =
                    nosanPluginDir / "onnx" / "libyams_onnx_plugin.dylib";
                const fs::path nosanGlintPlugin = nosanPluginDir / "glint" / "yams_glint.dylib";
                const fs::path defaultPluginDir = root / "builddir" / "plugins";
                const fs::path defaultOnnxPlugin =
                    defaultPluginDir / "onnx" / "libyams_onnx_plugin.dylib";
                const fs::path defaultGlintPlugin = defaultPluginDir / "glint" / "yams_glint.dylib";

                const auto choosePreferredPluginDir = [&]() -> std::optional<fs::path> {
                    struct Candidate {
                        fs::path dir;
                        fs::path onnxPlugin;
                        fs::path glintPlugin;
                    };
                    const std::array<Candidate, 3> candidates = {
                        {{localPluginDir, localOnnxPlugin, localGlintPlugin},
                         {nosanPluginDir, nosanOnnxPlugin, nosanGlintPlugin},
                         {defaultPluginDir, defaultOnnxPlugin, defaultGlintPlugin}}};
                    for (const auto& candidate : candidates) {
                        if (needsOnnxPlugin && !fs::exists(candidate.onnxPlugin)) {
                            continue;
                        }
                        if (needsGlintPlugin && !fs::exists(candidate.glintPlugin)) {
                            continue;
                        }
                        return candidate.dir;
                    }
                    return std::nullopt;
                };

                if (auto preferredPluginDir = choosePreferredPluginDir();
                    preferredPluginDir.has_value()) {
                    harnessOptions.pluginDir = *preferredPluginDir;
                } else if (needsOnnxPlugin && fs::exists(installedOnnxPlugin) &&
                           (!needsGlintPlugin || fs::exists(installedGlintPlugin))) {
                    const fs::path stagedPluginDir =
                        fs::temp_directory_path() / "yams_retrieval_bench_plugins";
                    const fs::path stagedOnnxPlugin =
                        stagedPluginDir / installedOnnxPlugin.filename();
                    const fs::path stagedGlintPlugin =
                        stagedPluginDir / installedGlintPlugin.filename();
                    std::error_code ec;
                    fs::path installedOnnxSource = fs::weakly_canonical(installedOnnxPlugin, ec);
                    if (ec || installedOnnxSource.empty()) {
                        ec.clear();
                        installedOnnxSource = installedOnnxPlugin;
                    }
                    fs::path installedGlintSource = installedGlintPlugin;
                    if (needsGlintPlugin) {
                        installedGlintSource = fs::weakly_canonical(installedGlintPlugin, ec);
                        if (ec || installedGlintSource.empty()) {
                            ec.clear();
                            installedGlintSource = installedGlintPlugin;
                        }
                    }
                    yams::common::ensureDirectories(stagedPluginDir);
                    if (ec) {
                        spdlog::warn("Failed to create staged plugin dir {}: {}",
                                     stagedPluginDir.string(), ec.message());
                        harnessOptions.pluginDir = installedPluginDir;
                    } else {
                        fs::remove(stagedOnnxPlugin, ec);
                        ec.clear();
                        fs::copy_file(installedOnnxSource, stagedOnnxPlugin,
                                      fs::copy_options::overwrite_existing, ec);
                        if (ec) {
                            spdlog::warn("Failed to stage installed ONNX plugin {} -> {}: {}",
                                         installedOnnxSource.string(), stagedOnnxPlugin.string(),
                                         ec.message());
                            harnessOptions.pluginDir = installedPluginDir;
                        } else if (needsGlintPlugin) {
                            fs::remove(stagedGlintPlugin, ec);
                            ec.clear();
                            fs::copy_file(installedGlintSource, stagedGlintPlugin,
                                          fs::copy_options::overwrite_existing, ec);
                            if (ec) {
                                throw std::runtime_error("Failed to stage installed Glint plugin " +
                                                         installedGlintSource.string() + " -> " +
                                                         stagedGlintPlugin.string() + ": " +
                                                         ec.message());
                            }
                            harnessOptions.pluginDir = stagedPluginDir;
                            spdlog::info("Using isolated installed ONNX+Glint plugin dir: {}",
                                         stagedPluginDir.string());
                        } else {
                            harnessOptions.pluginDir = stagedPluginDir;
                            spdlog::info("Using isolated installed ONNX plugin dir: {}",
                                         stagedPluginDir.string());
                        }
                    }
                } else if (needsOnnxPlugin && needsGlintPlugin) {
                    throw std::runtime_error(
                        "Glint plugin required for benchmark entity extraction but no plugin root "
                        "contains both ONNX and Glint plugins. Build with -Dplugin-glint=true or "
                        "set YAMS_PLUGIN_DIR to a directory containing libyams_onnx_plugin.dylib "
                        "and yams_glint.dylib.");
                } else if (needsGlintPlugin) {
                    // Glint-only (simeon backend): find any dir with Glint
                    if (fs::exists(localGlintPlugin))
                        harnessOptions.pluginDir = localPluginDir;
                    else if (fs::exists(nosanGlintPlugin))
                        harnessOptions.pluginDir = nosanPluginDir;
                    else if (fs::exists(defaultGlintPlugin))
                        harnessOptions.pluginDir = defaultPluginDir;
                    else
                        spdlog::warn("[Bench] Glint plugin not found; entity extraction disabled");
                } else if (fs::exists(localPluginDir)) {
                    harnessOptions.pluginDir = localPluginDir;
                } else if (fs::exists(nosanPluginDir)) {
                    harnessOptions.pluginDir = nosanPluginDir;
                } else {
                    harnessOptions.pluginDir = defaultPluginDir;
                }
            }

            if (embedBackendSimeon) {
                // Simeon backend is the preferred fast, built-in benchmark path.
                // Keep live-ish runs off ONNX entirely unless the operator explicitly
                // opts in via YAMS_BENCH_ENABLE_ONNX_RERANK=1.
                const bool enableOnnxRerank =
                    envTruthy(std::getenv("YAMS_BENCH_ENABLE_ONNX_RERANK"));
                if (enableOnnxRerank) {
                    json onnxConfig;
                    onnxConfig["reranker_model"] = "bge-reranker-base";
                    harnessOptions.pluginConfigs["onnx_plugin"] = onnxConfig.dump();
                    spdlog::info("Configured ONNX plugin: reranker=bge-reranker-base (explicit "
                                 "opt-in on simeon backend)");
                } else {
                    spdlog::info("Simeon benchmark path: ONNX reranker disabled");
                }
            } else {
                json onnxPluginConfig;
                onnxPluginConfig["preferred_model"] = "embeddinggemma-300m";
                onnxPluginConfig["reranker_model"] = "bge-reranker-base";
                harnessOptions.pluginConfigs["onnx_plugin"] = onnxPluginConfig.dump();
                spdlog::info("Configured ONNX plugin models: embedding=embeddinggemma-300m "
                             "reranker=bge-reranker-base");
            }

            std::vector<EnvSetting> pluginEnvOverrides;
            if (harnessOptions.pluginConfigs.contains("onnx_plugin") &&
                !std::getenv("YAMS_ONNX_RERANK_FORCE_CPU") &&
                !std::getenv("YAMS_ONNX_RERANK_FORCE_GPU")) {
                pluginEnvOverrides.push_back({"YAMS_ONNX_RERANK_FORCE_CPU", std::string("1")});
                spdlog::info("Enabled CPU-preferred ONNX reranker for benchmark evaluation");
            }
            if (!pluginEnvOverrides.empty()) {
                pluginScopedEnv = std::make_unique<ScopedEnvOverrides>(pluginEnvOverrides);
            }

            // Configure Glint plugin with GLiNER model path for NL entity extraction
            if (!glinerModelPath.empty()) {
                harnessOptions.autoLoadPlugins = true;
                harnessOptions.pluginDirStrict = false;
                json glintConfig;
                glintConfig["model_path"] = glinerModelPath;
                glintConfig["threshold"] = 0.5; // Default confidence threshold
                harnessOptions.pluginConfigs["glint"] = glintConfig.dump();
                spdlog::info("Configured Glint plugin with model: {}", glinerModelPath);
            }

            if (resetPluginTrustFile && harnessOptions.dataDir) {
                const fs::path trustFile = *harnessOptions.dataDir / "plugins.trust";
                std::set<fs::path> trusted;
                if (harnessOptions.pluginDir) {
                    trusted.insert(
                        yams::daemon::plugin_trust::normalizePath(*harnessOptions.pluginDir));
                }
                if (!yams::daemon::plugin_trust::writeTrustStore(trustFile, trusted)) {
                    spdlog::warn("Failed to rewrite plugin trust file {}", trustFile.string());
                } else {
                    spdlog::info("Rewrote plugin trust file for isolated benchmark plugins: {}",
                                 trustFile.string());
                }
            }

            if (useIsolatedBenchmarkConfig) {
                std::string configSuffix = "yams_retrieval_bench_config.toml";
                const std::string engineLabel = benchmarkEngineCacheLabel();
                configSuffix = "yams_retrieval_bench_config_" + engineLabel + ".toml";
                if (g_debugRunContext.has_value() && !g_debugRunContext->candidate.empty()) {
                    configSuffix = "yams_retrieval_bench_config_" + engineLabel + "_" +
                                   g_debugRunContext->candidate + ".toml";
                }
                const fs::path configPath = fs::temp_directory_path() / configSuffix;
                std::ofstream configOut(configPath, std::ios::trunc);
                if (!configOut) {
                    spdlog::warn("Failed to write isolated benchmark config: {}",
                                 configPath.string());
                } else {
                    configOut << "# Isolated benchmark config\n";
                    if (harnessOptions.dataDir) {
                        configOut << "[core]\n";
                        configOut << "data_dir = \"" << harnessOptions.dataDir->string()
                                  << "\"\n\n";
                        configOut << "[storage]\n";
                        configOut << "base_path = \"" << harnessOptions.dataDir->string()
                                  << "\"\n\n";
                    }
                    configOut << "[embeddings]\n";
                    if (embedBackendSimeon) {
                        configOut << "preferred_model = \"simeon-default\"\n";
                        const bool fixedHash384 = g_simeonEncoderProfile == "fixed_hash_384";
                        configOut << "embedding_dim = " << (fixedHash384 ? 384 : 1024) << "\n\n";
                        if (!g_simeonEncoderProfile.empty()) {
                            configOut << "[embeddings.simeon]\n";
                            configOut << "encoder_profile = \"" << g_simeonEncoderProfile
                                      << "\"\n\n";
                        }
                        if (g_simeonBm25Enabled.has_value()) {
                            configOut << "[embeddings.simeon.bm25]\n";
                            configOut << "enabled = " << (*g_simeonBm25Enabled ? "true" : "false")
                                      << "\n\n";
                        }
                        if (g_simeonRouterEnabled.has_value()) {
                            configOut << "[embeddings.simeon.bm25.router]\n";
                            configOut << "enabled = " << (*g_simeonRouterEnabled ? "true" : "false")
                                      << "\n\n";
                        }
                        if (g_simeonFragmentGeometryEnabled.has_value() ||
                            !g_simeonFragmentEncoderProfile.empty()) {
                            configOut << "[embeddings.simeon.bm25.fragment_geometry]\n";
                            if (g_simeonFragmentGeometryEnabled.has_value()) {
                                configOut << "enabled = "
                                          << (*g_simeonFragmentGeometryEnabled ? "true" : "false")
                                          << "\n";
                            }
                            if (!g_simeonFragmentEncoderProfile.empty()) {
                                configOut << "encoder_profile = \""
                                          << g_simeonFragmentEncoderProfile << "\"\n";
                            }
                            configOut << "\n";
                        }
                        configOut << "[daemon.models]\n";
                        configOut << "preload_models = []\n";
                    } else {
                        configOut << "preferred_model = \"embeddinggemma-300m\"\n";
                        configOut << "embedding_dim = 768\n\n";
                        configOut << "[daemon.models]\n";
                        configOut << "preload_models = [\"embeddinggemma-300m\"]\n";
                    }
                    yams::bench::writeTopologyDisabledEmbeddingSelection(configOut,
                                                                         topologyDisabled);
                    if (envSet(simeonOuterMaxSimEnv)) {
                        configOut << "\n[search]\n";
                        configOut << "simeon_rerank_outer_maxsim = "
                                  << (envTruthy(simeonOuterMaxSimEnv->c_str()) ? "true" : "false")
                                  << "\n";
                    }
                    configOut << "\n[vector_database]\n";
                    configOut << "search_engine = \"" << g_benchmark_search_engine << "\"\n";
                    if (std::getenv("YAMS_BENCH_SIMEON_PQ_RERANK_FACTOR") != nullptr) {
                        configOut << "simeon_pq_rerank_factor = "
                                  << std::max<std::size_t>(
                                         1, parseSizeEnvOrDefault(
                                                "YAMS_BENCH_SIMEON_PQ_RERANK_FACTOR", 2))
                                  << "\n";
                    }
                    if ((topologyModeEnv && *topologyModeEnv) || writeTopologyRouteConfig) {
                        configOut << "\n[search.topology]\n";
                        if (topologyModeEnv && *topologyModeEnv) {
                            configOut << "mode = \"" << topologyModeEnv << "\"\n";
                        }
                        if (const char* policy = std::getenv("YAMS_BENCH_TOPOLOGY_VECTOR_POLICY");
                            policy && *policy) {
                            configOut << "vector_policy = \"" << policy << "\"\n";
                        }
                        if (const char* selector =
                                std::getenv("YAMS_BENCH_TOPOLOGY_RESCUE_SELECTOR");
                            selector && *selector) {
                            configOut << "rescue_selector = \"" << selector << "\"\n";
                        }
                        configOut << "min_clusters = "
                                  << parseSizeEnvOrDefault("YAMS_BENCH_TOPOLOGY_MIN_CLUSTERS", 1)
                                  << "\n";
                        configOut << "max_clusters = "
                                  << parseSizeEnvOrFallback("YAMS_BENCH_TOPOLOGY_MAX_CLUSTERS",
                                                            "YAMS_SEARCH_TOPOLOGY_MAX_CLUSTERS", 2)
                                  << "\n";
                        configOut << "max_docs = "
                                  << parseSizeEnvOrFallback("YAMS_BENCH_TOPOLOGY_MAX_DOCS",
                                                            "YAMS_SEARCH_TOPOLOGY_MAX_DOCS", 64)
                                  << "\n";
                        if (topologyExpansionOutputLimitEnv && *topologyExpansionOutputLimitEnv) {
                            configOut << "expansion_output_limit = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_EXPANSION_OUTPUT_LIMIT", 0)
                                      << "\n";
                        }
                        configOut << "max_seed_documents = "
                                  << parseSizeEnvOrDefault("YAMS_BENCH_TOPOLOGY_MAX_SEED_DOCUMENTS",
                                                           32)
                                  << "\n";
                        // Road beam arms (route_only / augment); unset keeps the product default
                        // of no road hops.
                        if (envSet(topologyRoadHopsEnv)) {
                            configOut << "road_hops = "
                                      << parseSizeEnvOrDefault("YAMS_BENCH_TOPOLOGY_ROAD_HOPS", 0)
                                      << "\n";
                        }
                        if (envSet(topologyRoadBeamWidthEnv)) {
                            configOut
                                << "road_beam_width = "
                                << parseSizeEnvOrDefault("YAMS_BENCH_TOPOLOGY_ROAD_BEAM_WIDTH", 4)
                                << "\n";
                        }
                        // Road walk arm (route_only / augment); unset keeps the product default
                        // of no walk.
                        if (envSet(topologyRoadWalkWindowEnv)) {
                            configOut
                                << "road_walk_window = "
                                << parseSizeEnvOrDefault("YAMS_BENCH_TOPOLOGY_ROAD_WALK_WINDOW", 0)
                                << "\n";
                        }
                        if (topologyRepresentativeLimitEnv && *topologyRepresentativeLimitEnv) {
                            configOut << "representative_limit = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_ROUTE_REPRESENTATIVE_LIMIT", 0)
                                      << "\n";
                        }
                        if (topologyAnnCandidateLimitEnv && *topologyAnnCandidateLimitEnv) {
                            configOut << "ann_candidate_limit = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_ROUTE_ANN_CANDIDATE_LIMIT", 64)
                                      << "\n";
                        }
                        if (envSet(topologyBqCandidateLimitEnv)) {
                            configOut << "bq_candidate_limit = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_ROUTE_BQ_CANDIDATE_LIMIT", 0)
                                      << "\n";
                        }
                        if (envSet(graphCommunitySourceEnv)) {
                            configOut << "graph_community_source = \"" << *graphCommunitySourceEnv
                                      << "\"\n";
                        }
                        if (envSet(topologyBqPrefixDimEnv)) {
                            configOut << "bq_prefix_dim = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_ROUTE_BQ_PREFIX_DIM", 0)
                                      << "\n";
                        }
                        if (envSet(topologyBqRotationEnv)) {
                            configOut << "bq_rotation = \"" << *topologyBqRotationEnv << "\"\n";
                        }
                        configOut << "adaptive_probe_score_gap = "
                                  << parseFloatEnvOrDefault(
                                         "YAMS_BENCH_TOPOLOGY_ADAPTIVE_PROBE_SCORE_GAP", 0.0F)
                                  << "\n";
                        configOut << "narrow_min_boundary_margin = "
                                  << parseFloatEnvOrDefault(
                                         "YAMS_BENCH_TOPOLOGY_NARROW_MIN_BOUNDARY_MARGIN", 0.0F)
                                  << "\n";
                        if (const char* scoring = std::getenv("YAMS_BENCH_TOPOLOGY_ROUTE_SCORING");
                            scoring && *scoring) {
                            configOut << "route_scoring = \"" << scoring << "\"\n";
                        }
                        if (std::getenv("YAMS_BENCH_TOPOLOGY_SPARSE_DENSE_ALPHA") != nullptr) {
                            configOut << "sparse_dense_alpha = "
                                      << parseFloatEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_SPARSE_DENSE_ALPHA", 0.5F)
                                      << "\n";
                        }
                        if (std::getenv("YAMS_BENCH_TOPOLOGY_MIN_ROUTE_SCORE") != nullptr) {
                            configOut << "min_route_score = "
                                      << parseFloatEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_MIN_ROUTE_SCORE", 0.0F)
                                      << "\n";
                        }
                        if (writeTopologyAdmissionConfig) {
                            const auto writeSizeSetting = [&](const char* envName,
                                                              const char* key) {
                                if (hasBenchmarkSetting(envName)) {
                                    configOut << key << " = " << parseSizeEnvOrDefault(envName, 0)
                                              << "\n";
                                }
                            };
                            const auto writeFloatSetting = [&](const char* envName,
                                                               const char* key) {
                                if (hasBenchmarkSetting(envName)) {
                                    configOut << key << " = "
                                              << parseFloatEnvOrDefault(envName, 0.0F) << "\n";
                                }
                            };
                            const auto writeStringSetting = [&](const char* envName,
                                                                const char* key) {
                                if (const auto value = yams::config::getenv_optional(envName);
                                    value && !value->empty()) {
                                    configOut << key << " = " << nlohmann::json(*value).dump()
                                              << "\n";
                                }
                            };
                            writeStringSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_FINGERPRINT",
                                               "route_calibration_fingerprint");
                            writeStringSetting(
                                "YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_POLICY_FINGERPRINT",
                                "route_calibration_policy_fingerprint");
                            writeStringSetting(
                                "YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_DATASET_IDENTITY",
                                "route_calibration_dataset_identity");
                            writeSizeSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_QUERIES",
                                             "route_calibration_queries");
                            writeSizeSetting(
                                "YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_PROTECTED_CANDIDATES",
                                "route_calibration_protected_candidates");
                            writeSizeSetting(
                                "YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_MISSED_PROTECTED_CANDIDATES",
                                "route_calibration_missed_protected_candidates");
                            writeSizeSetting("YAMS_BENCH_TOPOLOGY_ROUTE_MIN_CALIBRATION_QUERIES",
                                             "route_min_calibration_queries");
                            writeSizeSetting("YAMS_BENCH_TOPOLOGY_ROUTE_MAX_MISSES_PER_THOUSAND",
                                             "route_max_misses_per_thousand");
                            writeFloatSetting(
                                "YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_MIN_BOUNDARY_MARGIN",
                                "route_calibration_min_boundary_margin");
                            writeSizeSetting("YAMS_BENCH_TOPOLOGY_ROUTE_CALIBRATION_MIN_SEED_HITS",
                                             "route_calibration_min_seed_hits");
                            writeSizeSetting("YAMS_BENCH_TOPOLOGY_ROUTE_WORK_MAX_ROWS_VISITED",
                                             "route_work_max_rows_visited");
                            writeSizeSetting(
                                "YAMS_BENCH_TOPOLOGY_ROUTE_WORK_MAX_EXACT_DISTANCE_EVALUATIONS",
                                "route_work_max_exact_distance_evaluations");
                            writeSizeSetting("YAMS_BENCH_TOPOLOGY_ROUTE_WORK_MAX_ANN_CANDIDATES",
                                             "route_work_max_ann_candidates");
                        }
                        if (const char* exp = std::getenv("YAMS_BENCH_TOPOLOGY_EXPANSION");
                            exp && *exp) {
                            configOut << "expansion_source = \"" << exp << "\"\n";
                        } else if (const char* exp =
                                       std::getenv("YAMS_SEARCH_TOPOLOGY_EXPANSION_SOURCE");
                                   exp && *exp) {
                            configOut << "expansion_source = \"" << exp << "\"\n";
                        }
                        if (std::getenv("YAMS_SEARCH_TOPOLOGY_GRAPH_NEIGHBOR_MIN_SCORE") !=
                            nullptr) {
                            configOut << "graph_neighbor_min_score = "
                                      << parseFloatEnvOrDefault(
                                             "YAMS_SEARCH_TOPOLOGY_GRAPH_NEIGHBOR_MIN_SCORE", 0.25F)
                                      << "\n";
                        }
                        if (topologyGraphWeightedSeedRankingEnv &&
                            *topologyGraphWeightedSeedRankingEnv) {
                            configOut << "graph_weighted_seed_ranking = "
                                      << (envTruthy(topologyGraphWeightedSeedRankingEnv) ? "true"
                                                                                         : "false")
                                      << "\n";
                        }
                    }
                    // route_only is an evaluation arm: it serves uncertified routes, so the daemon
                    // only runs it behind the explicit gate. The bench opts in whenever the arm is
                    // selected; without this the policy downgrades to Shadow.
                    if (const auto policy =
                            yams::config::getenv_optional("YAMS_BENCH_TOPOLOGY_VECTOR_POLICY");
                        policy && !policy->empty()) {
                        std::string normalizedPolicy(*policy);
                        std::transform(normalizedPolicy.begin(), normalizedPolicy.end(),
                                       normalizedPolicy.begin(), [](unsigned char c) {
                                           return c == '-' ? '_'
                                                           : static_cast<char>(std::tolower(c));
                                       });
                        if (normalizedPolicy == "route_only") {
                            configOut << "\n[search.evaluation]\n";
                            configOut << "allow_uncertified_routes = true\n";
                        }
                    }
                    if (writeTopologyEngineConfig) {
                        configOut << "\n[topology]\n";
                        if (topologyEngineEnv && *topologyEngineEnv) {
                            configOut << "engine = \"" << topologyEngineEnv << "\"\n";
                        }
                        if (topologyRepresentativesEnv && *topologyRepresentativesEnv) {
                            configOut << "routing_representatives = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_ROUTING_REPRESENTATIVES", 1)
                                      << "\n";
                        }
                        if (envSet(topologyRepresentativeRuleEnv)) {
                            configOut << "representative_rule = \""
                                      << *topologyRepresentativeRuleEnv << "\"\n";
                        }
                        if (envSet(topologySgcHopsEnv)) {
                            configOut << "sgc_hops = "
                                      << parseSizeEnvOrDefault("YAMS_BENCH_TOPOLOGY_SGC_HOPS", 0)
                                      << "\n";
                        }
                        // Road network arms: roads per cluster and the walk order kind the build
                        // stores (Eval 3 sets the order per arm).
                        if (envSet(topologyRoadMaxPerClusterEnv)) {
                            configOut << "road_max_per_cluster = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_ROAD_MAX_PER_CLUSTER", 0)
                                      << "\n";
                        }
                        if (envSet(topologyRoadOrderEnv)) {
                            configOut << "road_order = \"" << *topologyRoadOrderEnv << "\"\n";
                        }
                        if (topologyBoundarySpillEnv && *topologyBoundarySpillEnv) {
                            configOut << "boundary_spill = "
                                      << (envTruthy(topologyBoundarySpillEnv) ? "true" : "false")
                                      << "\n";
                            configOut << "boundary_spill_limit = "
                                      << parseSizeEnvOrDefault(
                                             "YAMS_BENCH_TOPOLOGY_BOUNDARY_SPILL_LIMIT", 1)
                                      << "\n";
                            configOut
                                << "boundary_spill_distance_ratio = "
                                << parseFloatEnvOrDefault(
                                       "YAMS_BENCH_TOPOLOGY_BOUNDARY_SPILL_DISTANCE_RATIO", 1.05F)
                                << "\n";
                            configOut
                                << "boundary_spill_residual_penalty = "
                                << parseFloatEnvOrDefault(
                                       "YAMS_BENCH_TOPOLOGY_BOUNDARY_SPILL_RESIDUAL_PENALTY", 1.0F)
                                << "\n";
                        }
                    }
                    configOut.close();
                    harnessOptions.configPath = configPath;
                    spdlog::info("Using isolated benchmark config: {}", configPath.string());
                }
            }
        } else {
            spdlog::info("Using mock model provider (YAMS_DISABLE_VECTORS=1)");
        }

        harness = std::make_unique<DaemonHarness>(harnessOptions);
        std::chrono::milliseconds daemonReadyTimeout{30000};
        if (const char* env = std::getenv("YAMS_BENCH_DAEMON_READY_TIMEOUT_MS")) {
            daemonReadyTimeout = std::chrono::milliseconds{
                static_cast<std::chrono::milliseconds::rep>(std::stoll(env))};
        }
        if (!harness->start(daemonReadyTimeout))
            throw std::runtime_error("Failed to start daemon");

        ensureBenchmarkEmbeddingsReady(harness.get(), vectorsDisabled, forceMockEmbeddings,
                                       embedBackendSimeon);

        if (useBEIR) {
            const BEIRDataset& dataset = preparedBeirDataset.value();
            fs::path corpusDir = harness->rootDir() / "corpus";
            beirCorpus = std::make_unique<BEIRCorpusLoader>(dataset, corpusDir);
            beirCorpus->writeDocumentsAsFiles();
            benchCorpusDir = corpusDir;
            corpusSize = static_cast<int>(dataset.documents.size());
            numQueries = static_cast<int>(dataset.queries.size());
            expectedCacheMetadata.expectedDocs = corpusSize;
            expectedCacheMetadata.expectedQueries = numQueries;
            expectedCacheMetadata.corpusFingerprint = computePathFingerprint(benchCorpusDir);
        } else {
            benchCorpusDir = harness->rootDir() / "corpus";
            corpus = std::make_unique<CorpusGenerator>(benchCorpusDir, syntheticCorpusMode);
            corpus->generateDocuments(corpusSize);
            corpusSize = static_cast<int>(corpus->createdFiles.size());
            expectedCacheMetadata.expectedDocs = corpusSize;
            expectedCacheMetadata.corpusFingerprint = computePathFingerprint(benchCorpusDir);
        }

        yams::daemon::ClientConfig clientCfg;
        // Prefer proxy socket for long-running benchmark connections; it skips
        // maxConnectionLifetime enforcement (main socket forces close at ~300s).
        {
            // Proxy socket is derived from daemon socket stem + ".proxy.sock".
            fs::path daemonSock = harness->socketPath();
            auto base = daemonSock.stem().string();
            if (base.empty())
                base = daemonSock.filename().string();
            if (base.empty())
                base = "yams-daemon";
            fs::path proxySock = daemonSock.parent_path() / (base + ".proxy.sock");
            if (fs::exists(proxySock)) {
                clientCfg.socketPath = proxySock;
                spdlog::info("Using proxy socket for benchmark client: {}", proxySock.string());
            } else {
                clientCfg.socketPath = harness->socketPath();
                spdlog::info("Proxy socket not found; using main socket: {}",
                             clientCfg.socketPath.string());
            }
        }
        clientCfg.connectTimeout = 5s;
        const auto benchmarkRequestTimeout =
            std::max(std::chrono::duration_cast<std::chrono::milliseconds>(300s),
                     configuredBenchQueryTimeout("hybrid"));
        clientCfg.requestTimeout = benchmarkRequestTimeout;
        clientCfg.autoStart = false;

        auto isEofLikeError = [](const yams::Error& error) {
            return error.message.find("[ipc:eof]") != std::string::npos ||
                   error.message.find("End of file") != std::string::npos ||
                   error.message.find("Connection closed") != std::string::npos;
        };

        auto connectClientWithProbe = [&](const char* reason) {
            if (reason && *reason) {
                spdlog::info("[Bench] Reconnecting benchmark client ({})", reason);
            }

            client = std::make_unique<yams::daemon::DaemonClient>(clientCfg);
            // Override header/body timeouts to handle slow reranker queries.
            // Default headerTimeout=30s is too short when cross-encoder reranking
            // takes 20-60s before any response header is sent.
            client->setHeaderTimeout(benchmarkRequestTimeout);
            client->setBodyTimeout(benchmarkRequestTimeout);
            auto connectResult = benchRunSync(client->connect(), 5s);
            if (!connectResult) {
                throw std::runtime_error("Failed to connect: " + connectResult.error().message);
            }

            // Probe the exact selected socket path before ingesting to catch startup races.
            constexpr int kStatusProbeAttempts = 8;
            for (int attempt = 1; attempt <= kStatusProbeAttempts; ++attempt) {
                auto statusProbe = benchRunSync(client->status(true), 5s);
                if (statusProbe) {
                    if (attempt > 1) {
                        spdlog::info("[Bench] Client status probe succeeded after {} attempts",
                                     attempt);
                    }
                    return;
                }

                if (attempt == kStatusProbeAttempts) {
                    throw std::runtime_error("Client status probe failed: " +
                                             statusProbe.error().message);
                }

                const bool eofLike = isEofLikeError(statusProbe.error());
                const auto backoff = std::chrono::milliseconds(125 * attempt);
                spdlog::warn("[Bench] Client status probe attempt {}/{} failed ({}{}), retrying in "
                             "{}ms",
                             attempt, kStatusProbeAttempts, statusProbe.error().message,
                             eofLike ? ", eof-like" : "", backoff.count());

                if (eofLike) {
                    // Drop any potentially stale pooled transport before retrying.
                    client.reset();
                    yams::daemon::AsioConnectionPool::shutdown_all(std::chrono::milliseconds(250));
                    auto reconnectWait = std::chrono::milliseconds(80);
                    std::this_thread::sleep_for(reconnectWait);
                    client = std::make_unique<yams::daemon::DaemonClient>(clientCfg);
                    client->setHeaderTimeout(std::chrono::milliseconds(300000));
                    client->setBodyTimeout(std::chrono::milliseconds(300000));
                    auto reconnectResult = benchRunSync(client->connect(), 5s);
                    if (!reconnectResult) {
                        throw std::runtime_error("Failed to reconnect after probe EOF: " +
                                                 reconnectResult.error().message);
                    }
                }

                std::this_thread::sleep_for(backoff);
            }
        };

        connectClientWithProbe("initial setup");

        const bool usingExternalBenchDataDir = harnessOptions.dataDir.has_value();
        const fs::path effectiveDataDir =
            harnessOptions.dataDir.has_value() ? *harnessOptions.dataDir : harness->dataDir();
        auto initialStatusResult = benchRunSync(client->status(true), 5s);
        const auto getInitialCount = [&](const std::string& key) -> uint64_t {
            if (!initialStatusResult) {
                return 0;
            }
            auto it = initialStatusResult.value().requestCounts.find(key);
            return (it == initialStatusResult.value().requestCounts.end()) ? 0ULL : it->second;
        };

        const bool warmCacheMetadataReusable =
            warmCacheMetadata.has_value() &&
            (warmCacheMetadata->status == "primed" || warmCacheMetadata->status == "partial");

        const uint64_t initialIndexedDocCount = [&]() -> uint64_t {
            if (warmCacheMetadataReusable) {
                return static_cast<uint64_t>(warmCacheMetadata->expectedDocs);
            }
            if (!initialStatusResult) {
                return 0;
            }
            auto itIndexed = initialStatusResult.value().requestCounts.find("documents_indexed");
            if (itIndexed != initialStatusResult.value().requestCounts.end()) {
                return itIndexed->second;
            }
            auto itTotal = initialStatusResult.value().requestCounts.find("documents_total");
            return (itTotal == initialStatusResult.value().requestCounts.end()) ? 0ULL
                                                                                : itTotal->second;
        }();

        const uint64_t initialDocsEmbedded =
            warmCacheMetadataReusable ? static_cast<uint64_t>(warmCacheMetadata->embeddedDocs)
                                      : getInitialCount("documents_embedded");
        const uint64_t initialVectorCount =
            warmCacheMetadataReusable ? static_cast<uint64_t>(warmCacheMetadata->vectorCount)
                                      : getInitialCount("vector_count");
        const uint64_t initialEmbedQueued =
            warmCacheMetadataReusable ? 0 : getInitialCount("embed_svc_queued");
        const uint64_t initialEmbedInFlight =
            warmCacheMetadataReusable ? 0 : getInitialCount("embed_in_flight");
        const PersistedHnswState initialPersistedHnsw = inspectPersistedHnswState(effectiveDataDir);
        bool initialBackendIndexReusable = false;
        if (auto* daemon = harness ? harness->daemon() : nullptr) {
            if (auto* serviceManager = daemon->getServiceManager()) {
                if (auto vectorDb = serviceManager->getVectorDatabase();
                    vectorDb && vectorDb->isInitialized()) {
                    const auto probeStart = std::chrono::steady_clock::now();
                    initialBackendIndexReusable = vectorDb->hasReusablePersistedSearchIndex();
                    setupTimings.vectorIndexReusableProbeMs +=
                        std::chrono::duration_cast<std::chrono::milliseconds>(
                            std::chrono::steady_clock::now() - probeStart)
                            .count();
                    ++setupTimings.vectorIndexReusableProbeCount;
                }
            }
        }
        const bool cacheHasIndexedCorpus =
            usingExternalBenchDataDir &&
            initialIndexedDocCount >= static_cast<uint64_t>(corpusSize);
        const bool cacheHasFullEmbeddings =
            usingExternalBenchDataDir && !vectorsDisabled &&
            initialDocsEmbedded >= static_cast<uint64_t>(corpusSize) && initialEmbedQueued == 0 &&
            initialEmbedInFlight == 0;
        const bool cacheHasReusableVectorIndex =
            vectorsDisabled || (usingExternalBenchDataDir &&
                                yams::bench::benchmarkSearchIndexReusable(
                                    benchmarkVectorSearchEngine(), initialBackendIndexReusable));

        if (usingExternalBenchDataDir) {
            spdlog::info("[Bench] External data dir status: indexed_docs={} embedded_docs={} "
                         "vector_count={} embed_queue={} embed_in_flight={} vector_index_ready={} "
                         "persisted_hnsw_nodes={} persisted_hnsw_meta={}{}",
                         initialIndexedDocCount, initialDocsEmbedded, initialVectorCount,
                         initialEmbedQueued, initialEmbedInFlight,
                         (cacheHasReusableVectorIndex ? "true" : "false"),
                         initialPersistedHnsw.nodeRows, initialPersistedHnsw.metaRows,
                         warmCacheMetadataReusable ? " (trusted metadata)" : "");
        }

        if (!(cacheHasFullEmbeddings && cacheHasReusableVectorIndex)) {
            if (cacheHasIndexedCorpus) {
                spdlog::info("[Bench] Reusing indexed corpus from external data dir; skipping "
                             "directory ingest");
            }

            if (!cacheHasIndexedCorpus) {
                // Use directory ingestion for faster bulk add via IndexingService
                fs::path corpusDir = useBEIR ? beirCorpus->corpusDir : corpus->corpusDir;
                spdlog::info("Ingesting {} documents from {}...", corpusSize, corpusDir.string());
                setupTimings.coldIngestPerformed = true;
                coldIngestStartedAt = SetupClock::now();

                yams::daemon::AddDocumentRequest addReq;
                addReq.path = corpusDir.string();
                addReq.recursive = true;
                addReq.noEmbeddings = false;
                addReq.includePatterns = {"*.txt"};

                Result<yams::daemon::AddDocumentResponse> addResult =
                    Error{ErrorCode::Unknown, "ingest not attempted"};
                constexpr int kIngestAttempts = 2;
                for (int ingestAttempt = 1; ingestAttempt <= kIngestAttempts; ++ingestAttempt) {
                    if (!client) {
                        connectClientWithProbe("directory ingest attempt");
                        if (!client) {
                            throw std::runtime_error(
                                "Benchmark client unavailable before directory ingest attempt");
                        }
                    }

                    addResult = benchRunSync(client->streamingAddDocument(addReq), 120s);
                    if (addResult) {
                        break;
                    }

                    const bool eofLike = isEofLikeError(addResult.error());
                    if (!(eofLike && ingestAttempt < kIngestAttempts)) {
                        break;
                    }

                    spdlog::warn(
                        "[Bench] Directory ingest attempt {}/{} failed with eof-like transport "
                        "error ({}). Retrying once with a fresh client.",
                        ingestAttempt, kIngestAttempts, addResult.error().message);
                    client.reset();
                    yams::daemon::AsioConnectionPool::shutdown_all(std::chrono::milliseconds(250));
                    std::this_thread::sleep_for(std::chrono::milliseconds(120));
                    connectClientWithProbe("ingest retry after eof");
                }

                if (!addResult) {
                    throw std::runtime_error("Failed to ingest directory: " +
                                             addResult.error().message);
                }
                admissionCompletedAt = SetupClock::now();
                setupTimings.admissionMs = elapsedMsSince(*coldIngestStartedAt);
                spdlog::info("Directory ingestion request accepted: {}", addResult.value().message);

                // Wait for directory ingestion to complete by monitoring document count
                // Use progress-based timeout: only timeout if no progress for N seconds
                // This is more robust than a hard deadline because slow ingestion won't fail,
                // but true hangs will still be detected.
                auto progressTimeoutSec = std::chrono::seconds(
                    300); // 5 minutes without progress = stalled (embedding/model load)
                if (const char* env = std::getenv("YAMS_BENCH_PROGRESS_TIMEOUT")) {
                    progressTimeoutSec = std::chrono::seconds(std::stoi(env));
                }
                double ingestMinFraction = 1.0;
                if (const char* env = std::getenv("YAMS_BENCH_INGEST_MIN_FRACTION")) {
                    ingestMinFraction = std::clamp(std::stod(env), 0.0, 1.0);
                }
                const auto ingestTargetDocs = static_cast<uint64_t>(
                    std::ceil(static_cast<double>(corpusSize) * ingestMinFraction));
                spdlog::info("Waiting for ingestion to complete (expecting {} documents, "
                             "progress timeout {}s)...",
                             corpusSize, progressTimeoutSec.count());

                auto lastProgressTime = std::chrono::steady_clock::now();
                auto ingestHeartbeatAt = lastProgressTime + std::chrono::seconds(5);
                uint64_t lastDocCount = 0;
                uint64_t lastIndexedDocCount = 0;
                uint64_t lastContentExtracted = 0;
                uint64_t lastPostProcessed = 0;
                uint64_t lastEmbedQueued = 0;
                uint64_t lastEmbedInFlight = 0;
                uint64_t lastVectorCount = 0;
                uint32_t lastDepth = 0;
                int stableChecks = 0;

                // Helper to get metric from requestCounts with presence flag
                auto getMetric = [](const auto& counts,
                                    const std::string& key) -> std::pair<uint64_t, bool> {
                    auto it = counts.find(key);
                    if (it == counts.end())
                        return {0, false};
                    return {it->second, true};
                };

                uint64_t lastKgInFlight = 0, lastSymbolInFlight = 0, lastEntityInFlight = 0;
                uint64_t lastExtractionInFlight = 0;

                auto ingestionLooksCompleteFromLastObserved = [&]() -> bool {
                    const bool targetReached = (lastIndexedDocCount >= ingestTargetDocs) ||
                                               (lastDocCount >= ingestTargetDocs);
                    const bool allQueuesDrained =
                        (lastDepth == 0 && lastExtractionInFlight == 0 && lastKgInFlight == 0 &&
                         lastSymbolInFlight == 0 && lastEntityInFlight == 0 &&
                         lastEmbedQueued == 0 && lastEmbedInFlight == 0);
                    const bool extractionOrPostDone = (lastContentExtracted >= ingestTargetDocs) ||
                                                      (lastPostProcessed >= ingestTargetDocs);
                    return targetReached && allQueuesDrained && extractionOrPostDone;
                };

                while (true) {
                    auto now = std::chrono::steady_clock::now();
                    auto timeSinceProgress =
                        std::chrono::duration_cast<std::chrono::seconds>(now - lastProgressTime);

                    if (now >= ingestHeartbeatAt) {
                        ingestHeartbeatAt = now + std::chrono::seconds(5);
                        spdlog::info("Ingest wait heartbeat: since_progress={}s last_total={} "
                                     "last_indexed={} last_queue={} "
                                     "last_processed={}",
                                     timeSinceProgress.count(), lastDocCount, lastIndexedDocCount,
                                     lastDepth, lastPostProcessed);
                    }

                    // Check for stall (no progress for progressTimeoutSec)
                    if (timeSinceProgress > progressTimeoutSec) {
                        if (ingestionLooksCompleteFromLastObserved()) {
                            spdlog::warn(
                                "Ingestion progress timeout reached, but last observed metrics "
                                "already indicate completion; accepting completion.");
                            break;
                        }

                        // Status polls may intermittently fail even when work is done; perform one
                        // final verification poll before classifying as stalled.
                        auto finalVerify = benchRunSync(client->status(true), 10s);
                        if (finalVerify) {
                            const auto& counts = finalVerify.value().requestCounts;
                            auto get = [&](const std::string& key) -> uint64_t {
                                auto it = counts.find(key);
                                return (it == counts.end()) ? 0ULL : it->second;
                            };

                            const uint64_t docsTotal = get("documents_total");
                            const uint64_t docsIndexed = get("documents_indexed");
                            const uint64_t extracted = get("documents_content_extracted");
                            const uint64_t postQueued = get("post_ingest_queued");
                            const uint64_t postInFlight = get("post_ingest_inflight");
                            const uint64_t postProcessed = get("post_ingest_processed");
                            const uint64_t extractionInFlight = get("extraction_inflight");
                            const uint64_t kgInFlight = get("kg_inflight");
                            const uint64_t symbolInFlight = get("symbol_inflight");
                            const uint64_t entityInFlight = get("entity_inflight");
                            const uint64_t embedQueued = get("embed_svc_queued");
                            const uint64_t embedInFlight = get("embed_in_flight");

                            const bool targetReached = (docsIndexed >= ingestTargetDocs) ||
                                                       (docsTotal >= ingestTargetDocs);
                            const bool allQueuesDrained =
                                (postQueued == 0 && postInFlight == 0 && extractionInFlight == 0 &&
                                 kgInFlight == 0 && symbolInFlight == 0 && entityInFlight == 0 &&
                                 embedQueued == 0 && embedInFlight == 0);
                            const bool extractionOrPostDone = (extracted >= ingestTargetDocs) ||
                                                              (postProcessed >= ingestTargetDocs);

                            if (targetReached && allQueuesDrained && extractionOrPostDone) {
                                spdlog::warn(
                                    "Ingestion progress timeout reached but final verification "
                                    "shows completion (docs_total={}, docs_indexed={}, "
                                    "extracted={}, post_processed={}); accepting completion.",
                                    docsTotal, docsIndexed, extracted, postProcessed);
                                break;
                            }
                        }

                        spdlog::error(
                            "Ingestion stalled - no progress for {}s (docs: total={} indexed={} "
                            "target={} "
                            "queue={}, inflight: extract={} kg={} symbol={} entity={} extracted={} "
                            "processed={} embed_queue={} embed_in_flight={} vectors={})",
                            timeSinceProgress.count(), lastDocCount, lastIndexedDocCount,
                            corpusSize, lastDepth, lastExtractionInFlight, lastKgInFlight,
                            lastSymbolInFlight, lastEntityInFlight, lastContentExtracted,
                            lastPostProcessed, lastEmbedQueued, lastEmbedInFlight, lastVectorCount);
                        throw std::runtime_error(
                            "Ingestion stalled - benchmark results would be invalid. "
                            "Set YAMS_BENCH_PROGRESS_TIMEOUT=300 for slower systems. "
                            "For faster ingestion: YAMS_POST_EMBED_CONCURRENT=12 "
                            "YAMS_POST_EXTRACTION_CONCURRENT=12 YAMS_DB_POOL_MAX=48");
                    }

                    auto statusResult = benchRunSync(client->status(true), 5s);
                    if (statusResult) {
                        const auto& counts = statusResult.value().requestCounts;
                        uint32_t depth = statusResult.value().postIngestQueueDepth;
                        auto [docCount, docCountPresent] = getMetric(counts, "documents_total");
                        auto [indexedCount, indexedPresent] =
                            getMetric(counts, "documents_indexed");
                        auto [contentExtracted, extractedPresent] =
                            getMetric(counts, "documents_content_extracted");
                        auto [postQueued, postQueuedPresent] =
                            getMetric(counts, "post_ingest_queued");
                        auto [postInflight, postInflightPresent] =
                            getMetric(counts, "post_ingest_inflight");
                        auto [postProcessed, postProcessedPresent] =
                            getMetric(counts, "post_ingest_processed");
                        auto [embedQueued, embedQueuedPresent] =
                            getMetric(counts, "embed_svc_queued");
                        auto [embedInFlight, embedInFlightPresent] =
                            getMetric(counts, "embed_in_flight");
                        auto [vectorCount, vectorPresent] = getMetric(counts, "vector_count");
                        uint64_t queuedTotal = std::max<uint64_t>(depth, postQueued);

                        // Check all processing stage in-flight counters
                        auto [extractionInFlight, extractionPresent] =
                            getMetric(counts, "extraction_inflight");
                        auto [kgInFlight, kgPresent] = getMetric(counts, "kg_inflight");
                        auto [symbolInFlight, symbolPresent] = getMetric(counts, "symbol_inflight");
                        auto [entityInFlight, entityPresent] = getMetric(counts, "entity_inflight");

                        // Total in-flight across all stages (matches
                        // PostIngestQueue::totalInFlight())
                        uint64_t totalInFlight =
                            extractionInFlight + kgInFlight + symbolInFlight + entityInFlight;

                        bool statusChanged =
                            (queuedTotal != lastDepth || docCount != lastDocCount ||
                             indexedCount != lastIndexedDocCount ||
                             contentExtracted != lastContentExtracted ||
                             postProcessed != lastPostProcessed || kgInFlight != lastKgInFlight ||
                             symbolInFlight != lastSymbolInFlight ||
                             entityInFlight != lastEntityInFlight ||
                             extractionInFlight != lastExtractionInFlight ||
                             embedQueued != lastEmbedQueued || embedInFlight != lastEmbedInFlight ||
                             vectorCount != lastVectorCount);

                        if (statusChanged) {
                            bool vectorDbReady = statusResult.value().vectorDbReady;
                            if (auto it = statusResult.value().readinessStates.find("vector_db");
                                it != statusResult.value().readinessStates.end()) {
                                vectorDbReady = it->second;
                            }
                            spdlog::debug(
                                "Documents: total={} indexed={} / {} | queue={} inflight={} | "
                                "extracted={} "
                                "processed={} | extract={} kg={} symbol={} entity={} (total={}) | "
                                "embed_queue={} embed_in_flight={} vectors={} (ready={})",
                                docCount, indexedCount, corpusSize, queuedTotal, postInflight,
                                contentExtracted, postProcessed, extractionInFlight, kgInFlight,
                                symbolInFlight, entityInFlight, totalInFlight, embedQueued,
                                embedInFlight, vectorCount, (vectorDbReady ? "true" : "false"));
                            lastDepth = static_cast<uint32_t>(queuedTotal);
                            lastDocCount = docCount;
                            lastIndexedDocCount = indexedCount;
                            lastContentExtracted = contentExtracted;
                            lastPostProcessed = postProcessed;
                            lastEmbedQueued = embedQueued;
                            lastEmbedInFlight = embedInFlight;
                            lastVectorCount = vectorCount;
                            lastKgInFlight = kgInFlight;
                            lastSymbolInFlight = symbolInFlight;
                            lastEntityInFlight = entityInFlight;
                            lastExtractionInFlight = extractionInFlight;
                            stableChecks = 0;
                            lastProgressTime = now; // Reset progress timer on any change
                        } else {
                            stableChecks++;
                        }

                        // Complete when ALL stages are idle:
                        // - post_ingest_queued == 0 AND post_ingest_inflight == 0 (queue empty)
                        // - totalInFlight == 0 (all stages: extraction, KG, symbol, entity)
                        // - indexedCount >= corpusSize (or stable for 5+ seconds after reaching
                        // target)
                        bool allStagesDrained =
                            (queuedTotal == 0 && postInflight == 0 && totalInFlight == 0);
                        bool extractedReady =
                            extractedPresent
                                ? (contentExtracted >= static_cast<uint64_t>(corpusSize))
                                : true;
                        bool processedReady =
                            postProcessedPresent
                                ? (postProcessed >= static_cast<uint64_t>(corpusSize))
                                : true;
                        // `documents_indexed` is a search/FTS visibility counter and can lag or
                        // remain stale under sanitizer/slow asynchronous rebuild runs even after
                        // the directory ingest and post-ingest pipeline have accepted and processed
                        // the whole corpus. For benchmark setup, do not block forever on that
                        // secondary visibility counter once the canonical document total reached
                        // the requested corpus and extraction/post-processing has completed.
                        const bool corpusStored = docCount >= static_cast<uint64_t>(corpusSize);
                        bool indexedReady =
                            indexedPresent ? (indexedCount >= static_cast<uint64_t>(corpusSize) ||
                                              (corpusStored && (extractedReady || processedReady)))
                                           : corpusStored;
                        bool stableAfterDrain = (stableChecks >= 6);
                        if (allStagesDrained && indexedReady &&
                            (extractedReady || processedReady || stableAfterDrain)) {
                            spdlog::info(
                                "Ingestion complete: total={} indexed={} (target={}), all stages "
                                "drained (extracted={}, processed={})",
                                docCount, indexedCount, corpusSize, contentExtracted,
                                postProcessed);
                            break;
                        }
                    } else {
                        if (now >= ingestHeartbeatAt - std::chrono::seconds(5)) {
                            spdlog::warn("Status polling failed during ingest wait: {}",
                                         statusResult.error().message);
                        }
                    }
                    std::this_thread::sleep_for(500ms);
                }

                setupTimings.storageReadyMs = elapsedMsSince(*coldIngestStartedAt);
                setupTimings.pipelineDrainMs =
                    admissionCompletedAt.has_value() ? elapsedMsSince(*admissionCompletedAt) : 0;

            } else if (!vectorsDisabled) {
                yams::daemon::RepairRequest repairReq;
                repairReq.repairEmbeddings = true;
                repairReq.embeddingModel = "embeddinggemma-300m";
                repairReq.foreground = true;
                repairReq.maxRetries = 3;
                spdlog::info("[Bench] Requesting embedding repair to resume warm-cache priming...");
                auto repairResult = benchRunSync(client->callRepair(repairReq), 300s);
                if (!repairResult) {
                    spdlog::warn("[Bench] Embedding repair request failed: {}",
                                 repairResult.error().message);
                } else {
                    spdlog::info("[Bench] Embedding repair queued: success={} ops={} succeeded={} "
                                 "failed={} skipped={}",
                                 repairResult.value().success, repairResult.value().totalOperations,
                                 repairResult.value().totalSucceeded,
                                 repairResult.value().totalFailed,
                                 repairResult.value().totalSkipped);
                }
            }

            // Directory ingest carries no per-file metadata; copy the corpus metadata
            // (event_time, session_id, round_index, ...) onto the stored documents so the
            // topology extractor sees it. Idempotent, so warm caches repeat it.
            if (useBEIR && beirCorpus) {
                auto* daemon = harness ? harness->daemon() : nullptr;
                auto* serviceManager = daemon ? daemon->getServiceManager() : nullptr;
                auto metadataRepo = serviceManager ? serviceManager->getMetadataRepo() : nullptr;
                if (metadataRepo) {
                    std::size_t missing = 0;
                    const auto applied = yams::bench::applyBenchmarkDocumentMetadata(
                        *metadataRepo, *beirCorpus, &missing);
                    if (applied > 0 || missing > 0) {
                        spdlog::info("[Bench] Applied corpus metadata to {} documents ({} not "
                                     "found)",
                                     applied, missing);
                    }
                }
            }

            // Wait for embedding provider to become available
            spdlog::info("Waiting for embedding provider to become available...");
            auto deadline = std::chrono::steady_clock::now() + 30s;
            bool embeddingReady = false;
            while (std::chrono::steady_clock::now() < deadline) {
                auto statusResult = benchRunSync(client->status(true), 5s);
                if (statusResult && statusResult.value().embeddingAvailable) {
                    spdlog::info("Embedding provider is available (backend: {}, model: {})",
                                 statusResult.value().embeddingBackend,
                                 statusResult.value().embeddingModel);
                    embeddingReady = true;
                    break;
                }
                std::this_thread::sleep_for(500ms);
            }
            if (!embeddingReady) {
                spdlog::warn("Embedding provider did not become available within 30s");
            }

            // Wait for embeddings to be generated by checking document-level embedding progress
            // (documents_embedded) and queue drain. We still track vector_count for row-level
            // visibility, but vector_count is not a document counter.
            bool vectorsEnabled = !vectorsDisabled;
            if (vectorsEnabled && !embeddingReady) {
                vectorsEnabled = false;
                spdlog::warn("Disabling vector wait for this benchmark run: embedding provider is "
                             "unavailable; proceeding with keyword-dominant evaluation");
                if (summaryLog) {
                    summaryLog << "Embedding provider unavailable after 30s; skipping vector wait"
                               << std::endl;
                    summaryLog.flush();
                }
            }

            if (vectorsEnabled) {
                spdlog::info("Waiting for embeddings to be generated (target: {} docs)...",
                             corpusSize);

                auto embedHeartbeatAt = std::chrono::steady_clock::now() + std::chrono::seconds(5);

                // Log to summary file
                if (summaryLog) {
                    summaryLog << "=== Embedding Generation ===" << std::endl;
                    summaryLog << "Target: " << corpusSize << " documents" << std::endl;
                }

                auto embedProgressTimeoutSec = std::chrono::seconds(600);
                if (const char* env = std::getenv("YAMS_BENCH_EMBED_PROGRESS_TIMEOUT")) {
                    embedProgressTimeoutSec = std::chrono::seconds(std::stoi(env));
                }
                auto embedMaxWaitSec = std::chrono::seconds(7200); // 2h hard cap (configurable)
                if (const char* env = std::getenv("YAMS_BENCH_EMBED_MAX_WAIT")) {
                    embedMaxWaitSec = std::chrono::seconds(std::stoi(env));
                }
                struct EmbedWaitSnapshot {
                    uint64_t vectorCount = 0;
                    uint64_t docsEmbedded = 0;
                    uint64_t preparedDocs = 0;
                    uint64_t preparedChunks = 0;
                    uint64_t queueDepth = 0;
                    uint64_t inFlight = 0;
                    uint64_t dropped = 0;
                    uint64_t inferActive = 0;
                    uint64_t inferOldestMs = 0;
                    uint64_t inferStarted = 0;
                    uint64_t inferCompleted = 0;
                    uint64_t inferWarnCount = 0;
                    bool hasQueueMetrics = false;
                    bool vectorDbReady = false;

                    bool queueDrained() const { return queueDepth == 0 && inFlight == 0; }

                    bool inferLikelyActive(std::chrono::seconds timeout) const {
                        return inferActive > 0 &&
                               inferOldestMs < static_cast<uint64_t>(timeout.count()) * 1000ull;
                    }

                    double coverageFor(int totalDocs) const {
                        return totalDocs > 0 ? (docsEmbedded * 100.0 / totalDocs) : 0.0;
                    }

                    double avgChunksPerDoc() const {
                        return preparedDocs > 0 ? static_cast<double>(preparedChunks) /
                                                      static_cast<double>(preparedDocs)
                                                : 0.0;
                    }
                };

                auto progressSignalChanged = [](const EmbedWaitSnapshot& lhs,
                                                const EmbedWaitSnapshot& rhs) {
                    return lhs.vectorCount != rhs.vectorCount ||
                           lhs.docsEmbedded != rhs.docsEmbedded ||
                           lhs.preparedDocs != rhs.preparedDocs ||
                           lhs.preparedChunks != rhs.preparedChunks ||
                           lhs.queueDepth != rhs.queueDepth || lhs.inFlight != rhs.inFlight ||
                           lhs.dropped != rhs.dropped || lhs.inferActive != rhs.inferActive ||
                           lhs.inferStarted != rhs.inferStarted ||
                           lhs.inferCompleted != rhs.inferCompleted ||
                           lhs.inferWarnCount != rhs.inferWarnCount;
                };

                auto getRequestCount = [](const auto& status, std::string_view key) {
                    auto it = status.requestCounts.find(std::string(key));
                    return (it == status.requestCounts.end()) ? 0ULL : it->second;
                };

                auto collectEmbedSnapshot = [&](const auto& status) {
                    EmbedWaitSnapshot snapshot;
                    snapshot.vectorDbReady = status.vectorDbReady;
                    if (auto it = status.readinessStates.find("vector_db");
                        it != status.readinessStates.end()) {
                        snapshot.vectorDbReady = it->second;
                    }

                    snapshot.vectorCount = getRequestCount(status, "vector_count");
                    snapshot.docsEmbedded = getRequestCount(status, "documents_embedded");
                    snapshot.preparedDocs =
                        getRequestCount(status, "bus_embed_prepared_docs_queued");
                    snapshot.preparedChunks =
                        getRequestCount(status, "bus_embed_prepared_chunks_queued");
                    snapshot.queueDepth = getRequestCount(status, "embed_svc_queued");
                    snapshot.inFlight = getRequestCount(status, "embed_in_flight");
                    snapshot.dropped = getRequestCount(status, "bus_embed_dropped");
                    snapshot.inferActive = getRequestCount(status, "embed_infer_active");
                    snapshot.inferOldestMs = getRequestCount(status, "embed_infer_oldest_ms");
                    snapshot.inferStarted = getRequestCount(status, "embed_infer_started");
                    snapshot.inferCompleted = getRequestCount(status, "embed_infer_completed");
                    snapshot.inferWarnCount = getRequestCount(status, "embed_infer_warn_count");
                    snapshot.hasQueueMetrics = status.requestCounts.contains("embed_svc_queued") ||
                                               status.requestCounts.contains("embed_in_flight");
                    return snapshot;
                };

                EmbedWaitSnapshot observedSnapshot;
                EmbedWaitSnapshot lastProgressSnapshot;
                bool haveObservedSnapshot = false;
                bool haveProgressSnapshot = false;
                int stableCount = 0;
                bool embeddingDrainSatisfied = false;
                auto embedStartTime = std::chrono::steady_clock::now();
                auto lastEmbedProgressTime = embedStartTime;

                // Phase 1: Wait for embedding queue to drain and embedded documents to reach
                // target. Uses progress-based stall detection (like ingestion wait) to avoid
                // failing while work is still actively progressing on large corpora/slow
                // accelerators.
                while (true) {
                    auto now = std::chrono::steady_clock::now();
                    auto elapsed =
                        std::chrono::duration_cast<std::chrono::seconds>(now - embedStartTime);
                    auto sinceProgress = std::chrono::duration_cast<std::chrono::seconds>(
                        now - lastEmbedProgressTime);

                    if (embedMaxWaitSec.count() > 0 && elapsed > embedMaxWaitSec) {
                        throw std::runtime_error(
                            "Embedding wait exceeded hard limit (" +
                            std::to_string(embedMaxWaitSec.count()) +
                            "s) before benchmark queries (embed_svc_queued=" +
                            std::to_string(observedSnapshot.queueDepth) +
                            ", embed_in_flight=" + std::to_string(observedSnapshot.inFlight) +
                            ", docs_embedded=" + std::to_string(observedSnapshot.docsEmbedded) +
                            ", vectors=" + std::to_string(observedSnapshot.vectorCount) +
                            ", dropped=" + std::to_string(observedSnapshot.dropped) +
                            "). Increase YAMS_BENCH_EMBED_MAX_WAIT or tune embedding concurrency.");
                    }

                    const bool inferLikelyActive =
                        observedSnapshot.inferLikelyActive(embedProgressTimeoutSec);

                    if (sinceProgress > embedProgressTimeoutSec && !inferLikelyActive) {
                        throw std::runtime_error(
                            "Embedding wait stalled for " +
                            std::to_string(embedProgressTimeoutSec.count()) +
                            "s before benchmark queries (embed_svc_queued=" +
                            std::to_string(observedSnapshot.queueDepth) +
                            ", embed_in_flight=" + std::to_string(observedSnapshot.inFlight) +
                            ", docs_embedded=" + std::to_string(observedSnapshot.docsEmbedded) +
                            ", vectors=" + std::to_string(observedSnapshot.vectorCount) +
                            ", dropped=" + std::to_string(observedSnapshot.dropped) +
                            "). Increase timeout/concurrency or investigate model/provider "
                            "stalls.");
                    }

                    if (now >= embedHeartbeatAt) {
                        embedHeartbeatAt = now + std::chrono::seconds(5);
                        spdlog::info("Embed wait heartbeat: elapsed={}s since_progress={}s "
                                     "last_docs_embedded={} last_vectors={} queue={} in_flight={} "
                                     "infer_active={} infer_oldest_ms={} infer_started={} "
                                     "infer_completed={}",
                                     elapsed.count(), sinceProgress.count(),
                                     observedSnapshot.docsEmbedded, observedSnapshot.vectorCount,
                                     observedSnapshot.queueDepth, observedSnapshot.inFlight,
                                     observedSnapshot.inferActive, observedSnapshot.inferOldestMs,
                                     observedSnapshot.inferStarted,
                                     observedSnapshot.inferCompleted);
                    }
                    auto statusResult = benchRunSync(client->status(true), 5s);
                    if (statusResult) {
                        const auto snapshot = collectEmbedSnapshot(statusResult.value());
                        const bool metricsChanged =
                            !haveObservedSnapshot ||
                            progressSignalChanged(snapshot, observedSnapshot);
                        observedSnapshot = snapshot;
                        haveObservedSnapshot = true;

                        if (metricsChanged) {
                            lastEmbedProgressTime = now;
                            stableCount = 0;
                        } else {
                            stableCount++;
                        }

                        if (!haveProgressSnapshot ||
                            observedSnapshot.vectorCount != lastProgressSnapshot.vectorCount ||
                            observedSnapshot.docsEmbedded != lastProgressSnapshot.docsEmbedded) {
                            const double docCoverage = observedSnapshot.coverageFor(corpusSize);
                            const double preparedAvgChunksPerDoc =
                                observedSnapshot.avgChunksPerDoc();
                            spdlog::info(
                                "Embedding progress: docs={} / {} ({:.1f}%) vectors={} "
                                "prepared_docs={} prepared_chunks={} avg_chunks_per_doc={:.2f} "
                                "| queue={} in_flight={} dropped={}",
                                observedSnapshot.docsEmbedded, corpusSize, docCoverage,
                                observedSnapshot.vectorCount, observedSnapshot.preparedDocs,
                                observedSnapshot.preparedChunks, preparedAvgChunksPerDoc,
                                observedSnapshot.queueDepth, observedSnapshot.inFlight,
                                observedSnapshot.dropped);

                            // Log progress to summary file
                            if (summaryLog) {
                                auto elapsed =
                                    std::chrono::duration_cast<std::chrono::milliseconds>(
                                        std::chrono::steady_clock::now() - embedStartTime)
                                        .count();
                                summaryLog << "[" << elapsed
                                           << "ms] DocsEmbedded: " << observedSnapshot.docsEmbedded
                                           << " / " << corpusSize << " (" << std::fixed
                                           << std::setprecision(1) << docCoverage << "%)"
                                           << " | vectors=" << observedSnapshot.vectorCount
                                           << " | prepared_docs=" << observedSnapshot.preparedDocs
                                           << " prepared_chunks=" << observedSnapshot.preparedChunks
                                           << " avg_chunks_per_doc=" << std::fixed
                                           << std::setprecision(2) << preparedAvgChunksPerDoc
                                           << " | queue=" << observedSnapshot.queueDepth
                                           << " in_flight=" << observedSnapshot.inFlight
                                           << " dropped=" << observedSnapshot.dropped << std::endl;
                                summaryLog.flush();
                            }

                            lastProgressSnapshot = observedSnapshot;
                            haveProgressSnapshot = true;
                        }

                        // Success condition: embedded docs >= corpusSize AND queue drained.
                        // vector_count tracks rows (chunks + doc records), not documents.
                        if (observedSnapshot.hasQueueMetrics &&
                            observedSnapshot.docsEmbedded >= static_cast<uint64_t>(corpusSize) &&
                            observedSnapshot.queueDrained()) {
                            auto elapsed = std::chrono::duration_cast<std::chrono::milliseconds>(
                                               std::chrono::steady_clock::now() - embedStartTime)
                                               .count();
                            spdlog::info(
                                "Full embedding coverage achieved: {} embedded docs for {} "
                                "target docs (queue drained, vector_db_ready={})",
                                observedSnapshot.docsEmbedded, corpusSize,
                                (observedSnapshot.vectorDbReady ? "true" : "false"));
                            if (summaryLog) {
                                summaryLog << "\n*** SUCCESS: Full coverage in " << elapsed
                                           << "ms ***" << std::endl;
                                summaryLog
                                    << "Final embedded docs: " << observedSnapshot.docsEmbedded
                                    << std::endl;
                                summaryLog << "Final vectors: " << observedSnapshot.vectorCount
                                           << std::endl;
                                summaryLog << "Total dropped: " << observedSnapshot.dropped
                                           << std::endl;
                                summaryLog.flush();
                            }
                            embeddingDrainSatisfied = true;
                            break;
                        }

                        // If very stable (20s) with queue drained, we're done even if < corpusSize
                        // This handles cases where some docs have no content to embed
                        // IMPORTANT: Require minimum 90% coverage to prevent premature exit from
                        // transient queue drain (e.g., between embedding batches)
                        const double coverage = observedSnapshot.coverageFor(corpusSize);
                        constexpr double MIN_COVERAGE_THRESHOLD = 90.0;
                        if (observedSnapshot.hasQueueMetrics && stableCount >= 40 &&
                            observedSnapshot.queueDrained() && observedSnapshot.docsEmbedded > 0 &&
                            coverage >= MIN_COVERAGE_THRESHOLD) {
                            auto elapsed = std::chrono::duration_cast<std::chrono::milliseconds>(
                                               std::chrono::steady_clock::now() - embedStartTime)
                                               .count();
                            spdlog::info(
                                "Embedding generation complete (queue drained, stable): {} "
                                "embedded docs ({:.1f}% coverage, vector_db_ready={})",
                                observedSnapshot.docsEmbedded, coverage,
                                (observedSnapshot.vectorDbReady ? "true" : "false"));
                            if (summaryLog) {
                                summaryLog << "\n*** Complete (queue drained) in " << elapsed
                                           << "ms ***" << std::endl;
                                summaryLog
                                    << "Final embedded docs: " << observedSnapshot.docsEmbedded
                                    << " (" << coverage << "%)" << std::endl;
                                summaryLog << "Final vectors: " << observedSnapshot.vectorCount
                                           << std::endl;
                                summaryLog.flush();
                            }
                            embeddingDrainSatisfied = true;
                            break;
                        }

                        if (observedSnapshot.hasQueueMetrics && stableCount >= 40 &&
                            observedSnapshot.queueDrained() && observedSnapshot.docsEmbedded == 0) {
                            throw std::runtime_error(
                                "Embedding failed before benchmark queries (queue "
                                "drained, no documents "
                                "embedded, dropped=" +
                                std::to_string(observedSnapshot.dropped) +
                                "). Check embedding provider/model availability.");
                        }

                        if (observedSnapshot.hasQueueMetrics && observedSnapshot.queueDrained() &&
                            observedSnapshot.docsEmbedded == 0 &&
                            elapsed > std::chrono::seconds(60)) {
                            throw std::runtime_error(
                                "Embedding appears unavailable for this candidate (queue drained, "
                                "no "
                                "documents embedded after " +
                                std::to_string(elapsed.count()) +
                                "s, dropped=" + std::to_string(observedSnapshot.dropped) +
                                "). Aborting candidate to keep optimization loop progressing.");
                        }

                        // If stable but queue NOT drained, warn about potential issues
                        if (observedSnapshot.hasQueueMetrics && stableCount >= 20 &&
                            !observedSnapshot.queueDrained() &&
                            !observedSnapshot.inferLikelyActive(embedProgressTimeoutSec) &&
                            observedSnapshot.docsEmbedded > 0) {
                            spdlog::warn("Embedding stalled at {:.1f}% but queue not drained "
                                         "(queue={}, in_flight={}). Continuing to wait...",
                                         coverage, observedSnapshot.queueDepth,
                                         observedSnapshot.inFlight);
                            // Don't break - keep waiting for queue to drain
                        }
                    }
                    std::this_thread::sleep_for(500ms);
                }

                if (auto* daemon = harness->daemon()) {
                    if (auto* serviceManager = daemon->getServiceManager()) {
                        auto vectorDb = serviceManager->getVectorDatabase();
                        auto metadataRepo = serviceManager->getMetadataRepo();

                        if (vectorDb && metadataRepo) {
                            auto embeddedHashes = vectorDb->getEmbeddedDocumentHashes();
                            if (embeddedHashes.size() > observedSnapshot.docsEmbedded) {
                                std::vector<std::string> reconciledHashes;
                                reconciledHashes.reserve(embeddedHashes.size());
                                for (const auto& hash : embeddedHashes) {
                                    reconciledHashes.push_back(hash);
                                }
                                auto reconcileResult =
                                    metadataRepo->batchUpdateDocumentEmbeddingStatusByHashes(
                                        reconciledHashes, true,
                                        serviceManager->getEmbeddingModelName());
                                if (!reconcileResult) {
                                    spdlog::warn("Failed to reconcile embedded-doc status from "
                                                 "vector rows: {}",
                                                 reconcileResult.error().message);
                                } else {
                                    spdlog::info("Reconciled embedded-doc status from vector rows: "
                                                 "{} -> {}",
                                                 observedSnapshot.docsEmbedded,
                                                 reconciledHashes.size());
                                    observedSnapshot.docsEmbedded = reconciledHashes.size();
                                    lastProgressSnapshot.docsEmbedded = reconciledHashes.size();
                                }
                            }
                        }
                    }
                }

                // Final status check
                auto finalStatus = benchRunSync(client->status(true), 5s);
                if (finalStatus) {
                    uint64_t finalVectorCount = 0;
                    auto it = finalStatus.value().requestCounts.find("vector_count");
                    if (it != finalStatus.value().requestCounts.end()) {
                        finalVectorCount = it->second;
                    }
                    uint64_t finalDocsEmbedded = 0;
                    auto itDocsEmbedded =
                        finalStatus.value().requestCounts.find("documents_embedded");
                    if (itDocsEmbedded != finalStatus.value().requestCounts.end()) {
                        finalDocsEmbedded = itDocsEmbedded->second;
                    }
                    uint64_t finalEmbedQueued = 0;
                    auto itQ = finalStatus.value().requestCounts.find("embed_svc_queued");
                    if (itQ != finalStatus.value().requestCounts.end()) {
                        finalEmbedQueued = itQ->second;
                    }
                    uint64_t finalEmbedInFlight = 0;
                    auto itInFlight = finalStatus.value().requestCounts.find("embed_in_flight");
                    if (itInFlight != finalStatus.value().requestCounts.end()) {
                        finalEmbedInFlight = itInFlight->second;
                    }
                    double finalCoverage =
                        corpusSize > 0 ? (finalDocsEmbedded * 100.0 / corpusSize) : 0;
                    bool vectorDbReady = finalStatus.value().vectorDbReady;
                    if (auto it = finalStatus.value().readinessStates.find("vector_db");
                        it != finalStatus.value().readinessStates.end()) {
                        vectorDbReady = it->second;
                    }
                    spdlog::info("Vector DB: ready={} dim={}, docs_embedded={} vectors={} "
                                 "({:.1f}% doc coverage)",
                                 (vectorDbReady ? "true" : "false"),
                                 finalStatus.value().vectorDbDim, finalDocsEmbedded,
                                 finalVectorCount, finalCoverage);

                    if (!embeddingDrainSatisfied) {
                        const bool queueDrained =
                            (finalEmbedQueued == 0 && finalEmbedInFlight == 0);
                        if (!queueDrained) {
                            throw std::runtime_error(
                                "Embedding drain not reached before benchmark queries "
                                "(embed_svc_queued=" +
                                std::to_string(finalEmbedQueued) +
                                ", embed_in_flight=" + std::to_string(finalEmbedInFlight) +
                                ", docs_embedded=" + std::to_string(finalDocsEmbedded) +
                                ", vectors=" + std::to_string(finalVectorCount) +
                                "). Increase timeout/concurrency or reduce corpus size to obtain "
                                "valid "
                                "results.");
                        }

                        // Queue may only be fully drained on the final status check.
                        embeddingDrainSatisfied = true;
                    }

                    if (finalDocsEmbedded == 0) {
                        spdlog::warn("No embedded documents present after embedding wait");
                    } else if (finalCoverage < 90.0) {
                        spdlog::error("WARNING: Low document embedding coverage ({:.1f}%) will "
                                      "degrade retrieval "
                                      "quality!",
                                      finalCoverage);
                        spdlog::error(
                            "Consider reducing corpus size or increasing embed channel capacity.");
                    }

                    if (!vectorDbReady) {
                        spdlog::warn("Vector DB not ready yet; waiting briefly before queries...");
                        const auto guardDeadline = std::chrono::steady_clock::now() + 30s;
                        while (std::chrono::steady_clock::now() < guardDeadline) {
                            auto st = benchRunSync(client->status(true), 5s);
                            if (st) {
                                bool ready = st.value().vectorDbReady;
                                if (auto it = st.value().readinessStates.find("vector_db");
                                    it != st.value().readinessStates.end()) {
                                    ready = it->second;
                                }
                                if (ready) {
                                    spdlog::info("Vector DB is now ready after guard wait");
                                    break;
                                }
                            }
                            std::this_thread::sleep_for(500ms);
                        }
                    }
                } else {
                    spdlog::warn("Final status check failed after embedding wait: {}",
                                 finalStatus.error().message);
                    if (!embeddingDrainSatisfied) {
                        throw std::runtime_error("Final status check failed after embedding wait; "
                                                 "cannot verify embedding drain. "
                                                 "Benchmark results would be unreliable.");
                    }
                }
            } else {
                spdlog::info("Vectors disabled - skipping embedding generation wait");
            }

        } else {
            spdlog::info("[Bench] Warm data dir: skipping ingestion + embedding wait (usable "
                         "vector index already present)");
        } // end if (!warmDataDir) / else

        bool benchmarkVectorIndexReusableAfter = vectorsDisabled;
        auto ensureVectorIndexReady = [&]() -> bool {
            if (vectorsDisabled) {
                return true;
            }

            const fs::path vectorIndexDataDir =
                harnessOptions.dataDir.has_value() ? *harnessOptions.dataDir : harness->dataDir();

            auto* daemon = harness ? harness->daemon() : nullptr;
            auto* serviceManager = daemon ? daemon->getServiceManager() : nullptr;
            auto vectorDb = serviceManager ? serviceManager->getVectorDatabase() : nullptr;
            if (!vectorDb || !vectorDb->isInitialized()) {
                spdlog::warn("[Bench] Cannot ensure vector index readiness: vector DB unavailable");
                return false;
            }
            const auto probeBackendReusable = [&]() {
                const auto probeStart = std::chrono::steady_clock::now();
                const bool reusable = vectorDb->hasReusablePersistedSearchIndex();
                setupTimings.vectorIndexReusableProbeMs +=
                    std::chrono::duration_cast<std::chrono::milliseconds>(
                        std::chrono::steady_clock::now() - probeStart)
                        .count();
                ++setupTimings.vectorIndexReusableProbeCount;
                return reusable;
            };

            auto persisted = vectorIndexDataDir.empty()
                                 ? PersistedHnswState{}
                                 : inspectPersistedHnswState(vectorIndexDataDir);
            const auto benchmarkEngine = benchmarkVectorSearchEngine();
            const bool backendReusableBefore = probeBackendReusable();
            setupTimings.vectorIndexReusableBefore =
                yams::bench::benchmarkSearchIndexReusable(benchmarkEngine, backendReusableBefore);
            const auto updateVectorIndexReadiness = [&](bool ready) {
                if (!daemon) {
                    return;
                }
                daemon->state_.readiness.vectorIndexReady.store(ready, std::memory_order_relaxed);
                daemon->state_.readiness.vectorIndexProgress.store(
                    ready ? 100
                          : (daemon->state_.readiness.vectorDbReady.load(std::memory_order_relaxed)
                                 ? 50
                                 : 0),
                    std::memory_order_relaxed);
            };

            const auto vectorRows = vectorDb->getVectorCount();
            if (vectorRows == 0) {
                spdlog::warn("[Bench] Cannot ensure vector index readiness: vector DB is empty");
                return false;
            }

            const bool indexlessExact =
                benchmarkEngine == yams::vector::VectorSearchEngine::ExactScan;
            bool preparedThisRun = false;
            if (!indexlessExact && !setupTimings.vectorIndexReusableBefore) {
                const char* modeLabel = warmDataDirPath.empty() ? "cold-run" : "warm-cache";
                spdlog::info("[Bench] Finalizing {} vector index (vectors={} persisted_nodes={} "
                             "persisted_meta={})",
                             modeLabel, vectorRows, persisted.nodeRows, persisted.metaRows);
                const auto start = std::chrono::steady_clock::now();
                const bool prepared = vectorDb->prepareSearchIndex();
                const auto elapsedMs = std::chrono::duration_cast<std::chrono::milliseconds>(
                                           std::chrono::steady_clock::now() - start)
                                           .count();
                setupTimings.vectorIndexPrepared = prepared;
                setupTimings.vectorIndexPrepareMs = elapsedMs;

                if (!prepared) {
                    spdlog::warn("[Bench] Vector index finalize failed after {} ms: {}", elapsedMs,
                                 vectorDb->getLastError());
                    return false;
                }
                preparedThisRun = true;
                const auto persistStart = std::chrono::steady_clock::now();
                const bool saved = vectorDb->persistIndex();
                setupTimings.vectorIndexPersistMs =
                    std::chrono::duration_cast<std::chrono::milliseconds>(
                        std::chrono::steady_clock::now() - persistStart)
                        .count();
                setupTimings.vectorIndexPersisted = saved;
                if (!saved) {
                    spdlog::warn("[Bench] Vector index persist failed after {} ms: {}",
                                 setupTimings.vectorIndexPersistMs, vectorDb->getLastError());
                    return false;
                }

                persisted = vectorIndexDataDir.empty()
                                ? PersistedHnswState{}
                                : inspectPersistedHnswState(vectorIndexDataDir);
                const bool backendReusableAfterPersist = probeBackendReusable();
                if (yams::bench::benchmarkSearchIndexReusable(benchmarkEngine,
                                                              backendReusableAfterPersist)) {
                    spdlog::info("[Bench] Vector index finalized in {} ms "
                                 "(persisted_nodes={} persisted_meta={})",
                                 elapsedMs, persisted.nodeRows, persisted.metaRows);
                } else if (benchmarkEngine == yams::vector::VectorSearchEngine::SimeonPqAdc) {
                    spdlog::info("[Bench] Vector index finalized in {} ms for {} "
                                 "(persisted PQ rows not required for this cold-run process)",
                                 elapsedMs, yams::vector::vectorSearchEngineName(benchmarkEngine));
                } else if (benchmarkEngine == yams::vector::VectorSearchEngine::Vec0L2) {
                    spdlog::info("[Bench] Vec0 index finalized in {} ms and is query-ready for "
                                 "this process (restart persistence unavailable)",
                                 elapsedMs);
                } else {
                    spdlog::info("[Bench] Exact-scan engine query-ready after {} ms; no persisted "
                                 "search index is required",
                                 elapsedMs);
                }
            }

            bool reusable =
                yams::bench::benchmarkSearchIndexReusable(benchmarkEngine, probeBackendReusable());
            bool ready = yams::bench::benchmarkSearchIndexQueryReady(benchmarkEngine, reusable,
                                                                     preparedThisRun);
            benchmarkVectorIndexReusableAfter = reusable;
            setupTimings.vectorIndexReusableAfter = reusable;
            setupTimings.vectorQueryReadyAfter = ready;
            updateVectorIndexReadiness(ready);

            int readyTimeoutSec = 60;
            if (const char* env = std::getenv("YAMS_BENCH_VECTOR_INDEX_READY_TIMEOUT")) {
                readyTimeoutSec = std::max(0, std::stoi(env));
            }
            const auto readyDeadline =
                std::chrono::steady_clock::now() + std::chrono::seconds(readyTimeoutSec);
            while (!ready && std::chrono::steady_clock::now() < readyDeadline) {
                if (!vectorIndexDataDir.empty()) {
                    persisted = inspectPersistedHnswState(vectorIndexDataDir);
                    reusable = yams::bench::benchmarkSearchIndexReusable(benchmarkEngine,
                                                                         probeBackendReusable());
                }
                ready = yams::bench::benchmarkSearchIndexQueryReady(benchmarkEngine, reusable,
                                                                    preparedThisRun);
                if (!ready) {
                    std::this_thread::sleep_for(500ms);
                }
            }

            benchmarkVectorIndexReusableAfter = reusable;
            setupTimings.vectorIndexReusableAfter = reusable;
            setupTimings.vectorQueryReadyAfter = ready;
            updateVectorIndexReadiness(ready);
            return ready;
        };

        if (!ensureVectorIndexReady()) {
            throw std::runtime_error("Vector index readiness not reached before benchmark queries; "
                                     "benchmark would mix brute-force fallback with ANN timing.");
        }

        if (!warmDataDirPath.empty()) {
            auto finalCacheMetadata =
                warmCacheMetadata.has_value()
                    ? preferStrongerBenchCacheMetadata(expectedCacheMetadata, warmCacheMetadata)
                    : expectedCacheMetadata;
            auto finalStatusForCache = benchRunSync(client->status(true), 5s);
            if (finalStatusForCache) {
                finalCacheMetadata =
                    currentBenchCacheMetadata(finalCacheMetadata, finalStatusForCache.value(),
                                              warmDataDirPath, benchmarkVectorIndexReusableAfter);
            }
            finalCacheMetadata =
                preferStrongerBenchCacheMetadata(finalCacheMetadata, warmCacheMetadata);
            if (!expectedCacheMetadata.datasetPath.empty() &&
                finalCacheMetadata.datasetPath.empty()) {
                finalCacheMetadata.datasetPath = expectedCacheMetadata.datasetPath;
            }

            const auto metadataWrite = writeBenchCacheMetadata(warmDataDirPath, finalCacheMetadata);
            if (!metadataWrite) {
                spdlog::warn("[Bench] Failed to write warm cache metadata for {}: {}",
                             warmDataDirPath.string(), metadataWrite.error().message);
            } else {
                spdlog::info(
                    "[Bench] Warm cache metadata written to {} (status={}, embedded_docs={}, "
                    "vectors={})",
                    (warmDataDirPath / "retrieval_bench_cache.json").string(),
                    finalCacheMetadata.status, finalCacheMetadata.embeddedDocs,
                    finalCacheMetadata.vectorCount);
            }
        }

        // Wait for search engine to be ready (critical for hybrid search!)
        // Without this, all hybrid searches fall back to keyword-only
        spdlog::info("Waiting for hybrid/vector search readiness...");
        const auto searchEngineDeadline = std::chrono::steady_clock::now() + 60s;
        bool searchEngineReady = false;
        while (std::chrono::steady_clock::now() < searchEngineDeadline) {
            auto statusCheck = benchRunSync(client->status(true), 5s);
            if (statusCheck) {
                const auto& readiness = statusCheck.value().readinessStates;
                bool hybridReady = false;
                if (auto it = readiness.find("search_engine_hybrid_usable");
                    it != readiness.end()) {
                    hybridReady = it->second;
                } else {
                    const bool lexicalReady = [&]() {
                        if (auto it = readiness.find("search_engine_lexical");
                            it != readiness.end()) {
                            return it->second;
                        }
                        if (auto it = readiness.find("search_engine"); it != readiness.end()) {
                            return it->second;
                        }
                        return false;
                    }();
                    const bool vectorReady = [&]() {
                        if (auto it = readiness.find("search_engine_vector_usable");
                            it != readiness.end()) {
                            return it->second;
                        }
                        if (auto it = readiness.find("vector_db_ready"); it != readiness.end()) {
                            return it->second;
                        }
                        if (auto it = readiness.find("vector_db"); it != readiness.end()) {
                            return it->second;
                        }
                        return statusCheck.value().vectorDbReady;
                    }();
                    hybridReady = lexicalReady && vectorReady;
                }
                if (hybridReady) {
                    searchEngineReady = true;
                    spdlog::info("Hybrid search is ready (lexical + vector usable)");
                    break;
                }
            }
            std::this_thread::sleep_for(500ms);
        }
        if (!searchEngineReady) {
            spdlog::error(
                "Hybrid/vector search not ready after 60s - hybrid searches will fall back to "
                "keyword-only!");
            spdlog::error("This is likely due to vector publication not completing.");
        }

        // Wait for Simeon lexical enhancement and concept mining to complete.
        // The async build thread can still be running after the search engine reports
        // ready, and concept mining can take additional wall-clock time.
        if (!vectorsDisabled) {
            const bool waitForConcepts =
                std::getenv("YAMS_SEARCH_WAIT_FOR_CONCEPTS") &&
                std::string(std::getenv("YAMS_SEARCH_WAIT_FOR_CONCEPTS")) != "0";
            if (waitForConcepts) {
                const auto lexicalReadyDeadline = std::chrono::steady_clock::now() + 120s;
                bool lexicalReady = false;
                spdlog::info("Waiting for Simeon lexical enhancement readiness...");
                while (std::chrono::steady_clock::now() < lexicalReadyDeadline) {
                    auto statusCheck = benchRunSync(client->status(true), 5s);
                    if (statusCheck) {
                        const auto& rc = statusCheck.value().requestCounts;
                        const auto get = [&](const std::string& key) -> uint64_t {
                            auto it = rc.find(key);
                            return (it == rc.end()) ? 0ULL : it->second;
                        };
                        const bool configured =
                            get("status_search_engine_lexical_enhancement_configured") > 0;
                        const bool ready =
                            get("status_search_engine_lexical_enhancement_ready") > 0;
                        const bool building =
                            get("status_search_engine_lexical_enhancement_building") > 0;
                        const uint64_t docCount =
                            get("status_search_engine_lexical_enhancement_doc_count");
                        const uint64_t conceptCount =
                            get("status_search_engine_lexical_enhancement_concept_count");
                        const bool conceptMiningEnabled =
                            get("status_search_engine_lexical_enhancement_concept_mining_enabled") >
                            0;

                        if (!configured) {
                            spdlog::info("Simeon lexical enhancement not configured; skipping "
                                         "lexical readiness wait");
                            lexicalReady = true;
                            break;
                        }
                        if (ready && !building && docCount >= static_cast<uint64_t>(corpusSize)) {
                            if (conceptMiningEnabled && corpusSize >= 100 && conceptCount == 0) {
                                spdlog::info("Simeon lexical ready (docs={}) but concept mining "
                                             "still pending; waiting...",
                                             docCount);
                            } else {
                                spdlog::info("Simeon lexical enhancement ready: configured={} "
                                             "ready={} building={} doc_count={} concept_count={} "
                                             "concept_mining_enabled={}",
                                             configured, ready, building, docCount, conceptCount,
                                             conceptMiningEnabled);
                                lexicalReady = true;
                                break;
                            }
                        } else {
                            spdlog::info("Simeon lexical enhancement not yet ready: "
                                         "configured={} ready={} building={} doc_count={} "
                                         "concept_count={}",
                                         configured, ready, building, docCount, conceptCount);
                        }
                    }
                    std::this_thread::sleep_for(500ms);
                }
                if (!lexicalReady) {
                    spdlog::error("Simeon lexical enhancement not ready after 120s");
                }
            }
        }

        if (coldIngestStartedAt.has_value()) {
            setupTimings.searchabilityReadyMs = elapsedMsSince(*coldIngestStartedAt);
        }

        auto effectiveKgReadinessPolicy = kgReadinessPolicy;
        if (kgReadinessPolicy != yams::search::BenchmarkKgReadinessPolicy::Skip) {
            auto statusForKgPolicy = benchRunSync(client->status(true), 5s);
            if (statusForKgPolicy) {
                bool tunedGraphRerank = graphRerankRequested;
                if (auto it =
                        statusForKgPolicy.value().searchTuningParams.find("enable_graph_rerank");
                    it != statusForKgPolicy.value().searchTuningParams.end()) {
                    tunedGraphRerank = it->second > 0.5f;
                }

                effectiveKgReadinessPolicy = yams::search::refineBenchmarkKgReadinessPolicy(
                    kgReadinessPolicy, explicitRequireKgReady, tunedGraphRerank);
                if (effectiveKgReadinessPolicy != kgReadinessPolicy) {
                    spdlog::info("[Bench] Refined KG readiness policy to {} after search tuning "
                                 "(state='{}', enable_graph_rerank={})",
                                 yams::search::benchmarkKgReadinessPolicyToString(
                                     effectiveKgReadinessPolicy),
                                 statusForKgPolicy.value().searchTuningState,
                                 tunedGraphRerank ? "true" : "false");
                }
            } else {
                spdlog::warn("[Bench] Unable to inspect tuned graph rerank before KG wait: {}",
                             statusForKgPolicy.error().message);
            }
        }

        if (effectiveKgReadinessPolicy != yams::search::BenchmarkKgReadinessPolicy::Skip) {
            int kgReadyTimeoutSec = 180;
            if (const char* env = std::getenv("YAMS_BENCH_KG_READY_TIMEOUT")) {
                kgReadyTimeoutSec = std::max(0, std::stoi(env));
            }

            spdlog::info("Waiting for KG readiness before query evaluation (timeout={}s)...",
                         kgReadyTimeoutSec);

            const auto kgDeadline =
                std::chrono::steady_clock::now() + std::chrono::seconds(kgReadyTimeoutSec);
            int stickyInflightGraceSec = 20;
            if (const char* env = std::getenv("YAMS_BENCH_KG_STICKY_INFLIGHT_GRACE_SEC")) {
                stickyInflightGraceSec = std::max(0, std::stoi(env));
            }
            const auto stickyInflightGrace = std::chrono::seconds(stickyInflightGraceSec);
            int stableReadyChecks = 0;
            bool kgReady = false;
            bool acceptedStickyInflight = false;
            bool acceptedWarmReuseIdle = false;
            bool lastHasKg = false;
            uint32_t lastQueueDepth = 0;
            uint64_t lastPostQueued = 0;
            uint64_t lastPostInflight = 0;
            uint64_t lastKgInflight = 0;
            uint64_t lastKgConsumed = 0;
            uint64_t lastSymbolInflight = 0;
            uint64_t lastEntityInflight = 0;
            uint64_t lastTitleInflight = 0;
            uint64_t lastTitleQueueDepth = 0;
            uint64_t lastExtractionInflight = 0;
            bool stickyInflightActive = false;
            uint64_t stickyInflightValue = 0;
            auto stickyInflightSince = std::chrono::steady_clock::time_point{};

            while (std::chrono::steady_clock::now() < kgDeadline) {
                const auto now = std::chrono::steady_clock::now();
                auto statusCheck = benchRunSync(client->status(true), 5s);
                auto statsCheck =
                    benchRunSync(client->getStats(yams::daemon::GetStatsRequest{}), 10s);

                bool queuesDrained = false;
                if (statusCheck) {
                    const auto& st = statusCheck.value();
                    const auto getCount = [&st](const std::string& key) -> uint64_t {
                        auto it = st.requestCounts.find(key);
                        return (it == st.requestCounts.end()) ? 0ULL : it->second;
                    };

                    lastQueueDepth = st.postIngestQueueDepth;
                    lastPostQueued = getCount("post_ingest_queued");
                    lastPostInflight = getCount("post_ingest_inflight");
                    lastExtractionInflight = getCount("extraction_inflight");
                    lastKgInflight = getCount("kg_inflight");
                    lastKgConsumed = getCount("kg_consumed");
                    lastSymbolInflight = getCount("symbol_inflight");
                    lastEntityInflight = getCount("entity_inflight");
                    lastTitleInflight = getCount("title_inflight");
                    lastTitleQueueDepth = getCount("title_queue_depth");

                    queuesDrained =
                        (lastQueueDepth == 0 && lastPostQueued == 0 && lastPostInflight == 0 &&
                         lastExtractionInflight == 0 && lastKgInflight == 0 &&
                         lastSymbolInflight == 0 && lastEntityInflight == 0 &&
                         lastTitleInflight == 0 && lastTitleQueueDepth == 0);
                }

                bool hasKg = false;
                uint64_t docEntitiesInserted = 0;
                if (statsCheck) {
                    const auto& stats = statsCheck.value();
                    if (auto it = stats.additionalStats.find("corpus_stats");
                        it != stats.additionalStats.end() && !it->second.empty()) {
                        try {
                            auto corpusStats = json::parse(it->second);
                            if (corpusStats.contains("classification") &&
                                corpusStats["classification"].is_object()) {
                                hasKg = corpusStats["classification"].value("has_kg", false);
                            }
                        } catch (const json::exception&) {
                        }
                    }
                    if (auto it = stats.additionalStats.find("kg_write_doc_entities_inserted");
                        it != stats.additionalStats.end() && !it->second.empty()) {
                        docEntitiesInserted = static_cast<uint64_t>(std::stoull(it->second));
                    }
                }

                lastHasKg = hasKg;
                const bool kgSignalReady =
                    hasKg || (lastKgConsumed > 0) || (docEntitiesInserted > 0);

                const bool queueIdle = (lastQueueDepth == 0 && lastPostQueued == 0);
                const bool stageInflightIdle =
                    (lastExtractionInflight == 0 && lastKgInflight == 0 &&
                     lastSymbolInflight == 0 && lastEntityInflight == 0 && lastTitleInflight == 0 &&
                     lastTitleQueueDepth == 0);

                bool stickyInflightReady = false;
                if (kgSignalReady && queueIdle && stageInflightIdle && lastPostInflight > 0) {
                    if (!stickyInflightActive || stickyInflightValue != lastPostInflight) {
                        stickyInflightActive = true;
                        stickyInflightValue = lastPostInflight;
                        stickyInflightSince = now;
                    } else if (now - stickyInflightSince >= stickyInflightGrace) {
                        stickyInflightReady = true;
                    }
                } else {
                    stickyInflightActive = false;
                    stickyInflightValue = 0;
                }

                const bool reusedWarmCacheWithoutIngest =
                    usingExternalBenchDataDir && cacheHasIndexedCorpus && cacheHasFullEmbeddings &&
                    cacheHasReusableVectorIndex;
                const bool warmReuseIdleReady =
                    reusedWarmCacheWithoutIngest && queuesDrained && lastPostInflight == 0;

                if (yams::search::benchmarkKgReadinessSatisfied(effectiveKgReadinessPolicy,
                                                                queuesDrained, kgSignalReady)) {
                    stableReadyChecks++;
                    if (stableReadyChecks >= 4) {
                        kgReady = true;
                        break;
                    }
                } else if (warmReuseIdleReady) {
                    kgReady = true;
                    acceptedWarmReuseIdle = true;
                    break;
                } else if (stickyInflightReady) {
                    kgReady = true;
                    acceptedStickyInflight = true;
                    break;
                } else {
                    stableReadyChecks = 0;
                }

                std::this_thread::sleep_for(500ms);
            }

            if (!kgReady) {
                throw std::runtime_error(
                    "KG not ready before benchmark queries (has_kg=" +
                    std::string(lastHasKg ? "true" : "false") + ", policy=" +
                    std::string(yams::search::benchmarkKgReadinessPolicyToString(
                        effectiveKgReadinessPolicy)) +
                    ", kg_consumed=" + std::to_string(lastKgConsumed) +
                    ", post_ingest_queue_depth=" + std::to_string(lastQueueDepth) +
                    ", post_ingest_queued=" + std::to_string(lastPostQueued) +
                    ", post_ingest_inflight=" + std::to_string(lastPostInflight) +
                    ", extraction_inflight=" + std::to_string(lastExtractionInflight) +
                    ", kg_inflight=" + std::to_string(lastKgInflight) +
                    ", symbol_inflight=" + std::to_string(lastSymbolInflight) +
                    ", entity_inflight=" + std::to_string(lastEntityInflight) +
                    ", title_inflight=" + std::to_string(lastTitleInflight) +
                    ", title_queue_depth=" + std::to_string(lastTitleQueueDepth) +
                    "). Increase YAMS_BENCH_KG_READY_TIMEOUT or reduce ingestion load.");
            }

            if (effectiveKgReadinessPolicy ==
                    yams::search::BenchmarkKgReadinessPolicy::AcceptDrainedWithoutSignal &&
                !lastHasKg && lastKgConsumed == 0) {
                spdlog::warn(
                    "KG readiness satisfied with drained queues under relaxed synthetic policy; "
                    "no explicit KG signal was observed. Graph signals may be weak.");
            } else if (!lastHasKg) {
                if (acceptedWarmReuseIdle) {
                    spdlog::warn(
                        "KG readiness accepted for reused warm cache with drained queues and no "
                        "active KG work, but corpus_stats.has_kg=false and kg_consumed={} in this "
                        "process. Graph signals may still be weak.",
                        lastKgConsumed);
                } else {
                    spdlog::warn(
                        "KG readiness satisfied via kg_consumed={}, but corpus_stats.has_kg=false "
                        "(low symbol_density). Graph signals may still be weak.",
                        lastKgConsumed);
                }
            } else if (acceptedStickyInflight) {
                spdlog::warn(
                    "KG readiness accepted with sticky post_ingest_inflight={} after {}s grace "
                    "(queues drained + stage inflight idle + corpus_stats.has_kg=true).",
                    lastPostInflight, stickyInflightGraceSec);
            } else if (acceptedWarmReuseIdle) {
                spdlog::info(
                    "KG readiness accepted for reused warm cache with drained queues and no "
                    "active KG work");
            } else {
                spdlog::info("KG readiness satisfied (queues drained + corpus_stats.has_kg=true)");
            }
        } else if (requireKgReady) {
            spdlog::info(
                "Skipping KG readiness wait because the effective tuned search policy disables "
                "graph rerank.");
        }

        yams::search::BenchmarkDaemonGraphState daemonGraphState;
        bool daemonGraphReady = false;
        bool daemonGraphCanonicalized = false;
        std::size_t daemonGraphCanonicalEdgesGenerated = 0;
        std::string daemonGraphCanonicalTopologySnapshot;
        std::string daemonGraphCanonicalTopologyFingerprint;
        if (g_requireDaemonNativeGraph) {
            auto graphState =
                waitForDaemonNativeGraph(*client, static_cast<std::uint64_t>(corpusSize));
            if (!graphState) {
                throw std::runtime_error(graphState.error().message);
            }
            daemonGraphState = std::move(graphState.value());

            auto* daemon = harness ? harness->daemon() : nullptr;
            auto* serviceManager = daemon ? daemon->getServiceManager() : nullptr;
            if (!serviceManager) {
                throw std::runtime_error(
                    "Daemon-native graph canonicalization requires ServiceManager");
            }
            auto semanticRebuild = serviceManager->rebuildSemanticNeighborGraph(
                "benchmark_daemon_native_graph_canonicalization");
            if (!semanticRebuild) {
                throw std::runtime_error("Failed to canonicalize daemon semantic graph: " +
                                         semanticRebuild.error().message);
            }
            daemonGraphCanonicalEdgesGenerated = semanticRebuild.value();

            auto canonicalGraphState =
                waitForDaemonNativeGraph(*client, static_cast<std::uint64_t>(corpusSize));
            if (!canonicalGraphState) {
                throw std::runtime_error(canonicalGraphState.error().message);
            }
            daemonGraphState = std::move(canonicalGraphState.value());

            std::string topologyAlgorithm = "connected";
            if (const char* raw = std::getenv("YAMS_BENCH_TOPOLOGY_ENGINE"); raw && *raw) {
                topologyAlgorithm = raw;
            }
            auto topologyRebuild =
                rebuildCanonicalDaemonTopology(*serviceManager, topologyAlgorithm);
            if (!topologyRebuild) {
                throw std::runtime_error("Failed to canonicalize daemon topology artifacts: " +
                                         topologyRebuild.error().message);
            }
            daemonGraphCanonicalTopologySnapshot = topologyRebuild.value().snapshotId;
            auto topologyFingerprint = loadTopologyRoutingConstructionFingerprint(
                *serviceManager, daemonGraphCanonicalTopologySnapshot);
            if (!topologyFingerprint) {
                throw std::runtime_error(
                    "Failed to fingerprint canonical daemon topology artifacts: " +
                    topologyFingerprint.error().message);
            }
            daemonGraphCanonicalTopologyFingerprint = std::move(topologyFingerprint.value());
            daemonGraphCanonicalized = true;
            daemonGraphReady = true;
        }

        if (coldIngestStartedAt.has_value()) {
            setupTimings.enrichmentReadyMs = elapsedMsSince(*coldIngestStartedAt);
        }

        // Verify document count using status metrics (avoids degraded search false negatives)
        uint64_t indexedDocCount = 0;
        auto statusResult = benchRunSync(client->status(true), 5s);
        if (warmCacheMetadata && warmCacheMetadata->status == "primed") {
            indexedDocCount = static_cast<uint64_t>(warmCacheMetadata->expectedDocs);
        } else if (statusResult) {
            if (auto it = statusResult.value().requestCounts.find("documents_indexed");
                it != statusResult.value().requestCounts.end()) {
                indexedDocCount = it->second;
            } else if (auto it = statusResult.value().requestCounts.find("documents_total");
                       it != statusResult.value().requestCounts.end()) {
                indexedDocCount = it->second;
            }
        }

        if (indexedDocCount == 0) {
            yams::daemon::SearchRequest testReq;
            testReq.query = "test";
            testReq.searchType = "hybrid";
            testReq.limit = 1000;
            const auto queryTimeout = configuredBenchQueryTimeout("hybrid");
            testReq.timeout = queryTimeout;
            auto waitBudget = queryTimeout + std::chrono::seconds(10);
            if (waitBudget < std::chrono::seconds(10)) {
                waitBudget = std::chrono::seconds(10);
            }
            auto testSearch =
                [&]() -> boost::asio::awaitable<Result<yams::daemon::SearchResponse>> {
                if (benchUseStreamingSearch()) {
                    co_return co_await client->search(testReq);
                }
                co_return co_await client->unarySearch(testReq);
            };
            auto testResult = benchRunSync(testSearch(), waitBudget);
            indexedDocCount = testResult ? testResult.value().results.size() : 0;
        }

        spdlog::info("Verified indexed documents: {} (expected: {})", indexedDocCount, corpusSize);
        if (indexedDocCount == 0) {
            spdlog::error("NO DOCUMENTS IN INDEX! Ingestion failed completely.");
            throw std::runtime_error("No documents indexed - benchmark cannot proceed");
        }

        seedSyntheticCommunityEdges();
        const bool reuseSeededTopologyInputs =
            warmDataDir && envTruthy(std::getenv("YAMS_BENCH_REUSE_SEEDED_TOPOLOGY_INPUTS"));
        const bool seededBenchmarkTopology =
            reuseSeededTopologyInputs || seedBenchmarkSemanticNeighbors();
        if (reuseSeededTopologyInputs) {
            spdlog::info("Reusing immutable semantic-neighbor topology inputs from warm cache");
        }

        if (benchmarkSemanticNeighborSeedingEnabled()) {
            if (!seededBenchmarkTopology) {
                throw std::runtime_error(
                    "Benchmark topology source seeding did not produce semantic_neighbor edges");
            }
            auto* daemon = harness ? harness->daemon() : nullptr;
            auto* serviceManager = daemon ? daemon->getServiceManager() : nullptr;
            if (!serviceManager) {
                throw std::runtime_error("Topology source benchmark requires ServiceManager");
            }
            std::string topologyEngine = "connected";
            if (const char* raw = std::getenv("YAMS_BENCH_TOPOLOGY_ENGINE"); raw && *raw) {
                topologyEngine = raw;
            }
            auto& topologyManager = serviceManager->getTopologyManager();
            const auto rebuildDeadline = std::chrono::steady_clock::now() + 60s;
            std::optional<yams::daemon::TopologyManager::RebuildStats> rebuildStats;
            do {
                if (topologyManager.isRebuildInProgress()) {
                    std::this_thread::sleep_for(50ms);
                    continue;
                }
                auto attempt = topologyManager.rebuildArtifacts("benchmark_topology_source_seed",
                                                                false, {}, topologyEngine);
                if (!attempt) {
                    throw std::runtime_error("Failed to rebuild topology after benchmark source "
                                             "seeding: " +
                                             attempt.error().message);
                }
                if (!attempt.value().skipped) {
                    rebuildStats = std::move(attempt.value());
                    break;
                }
                std::this_thread::sleep_for(50ms);
            } while (std::chrono::steady_clock::now() < rebuildDeadline);
            if (!rebuildStats.has_value()) {
                throw std::runtime_error(
                    "Timed out waiting to publish benchmark topology snapshot");
            }
            if (!rebuildStats->stored) {
                throw std::runtime_error(
                    "Topology source benchmark rebuild did not publish a stored snapshot");
            }
            spdlog::info("Rebuilt topology after source seeding: source={} clusters={} "
                         "memberships={} snapshot={}",
                         std::getenv("YAMS_BENCH_TOPOLOGY_SOURCE")
                             ? std::getenv("YAMS_BENCH_TOPOLOGY_SOURCE")
                             : "vector",
                         rebuildStats->clustersBuilt, rebuildStats->membershipsBuilt,
                         rebuildStats->snapshotId);
            auto exportResult = exportTopologyClusters(*serviceManager, rebuildStats->snapshotId);
            if (!exportResult) {
                throw std::runtime_error("Failed to export topology cluster composition: " +
                                         exportResult.error().message);
            }
        }

        // Post-ingest status/stats snapshot + sanity searches.
        // Goal: distinguish "no docs" vs "docs but query returns empty".
        {
            // Log StatusResponse (it already powers our ingestion waits).
            auto statusRes = benchRunSync(client->status(true), 5s);
            if (statusRes) {
                const auto& st = statusRes.value();
                uint64_t documentsTotal = 0;
                uint64_t documentsEmbedded = 0;
                uint64_t vectorCount = 0;
                uint64_t preparedDocsQueued = 0;
                uint64_t preparedChunksQueued = 0;
                uint64_t titleInflight = 0;
                uint64_t titleQueueDepth = 0;
                uint64_t titleQueued = 0;
                uint64_t titleDropped = 0;
                uint64_t titleConsumed = 0;
                if (auto it = st.requestCounts.find("documents_total");
                    it != st.requestCounts.end()) {
                    documentsTotal = it->second;
                }
                if (auto it = st.requestCounts.find("documents_embedded");
                    it != st.requestCounts.end()) {
                    documentsEmbedded = it->second;
                }
                if (auto it = st.requestCounts.find("vector_count"); it != st.requestCounts.end()) {
                    vectorCount = it->second;
                }
                if (auto it = st.requestCounts.find("bus_embed_prepared_docs_queued");
                    it != st.requestCounts.end()) {
                    preparedDocsQueued = it->second;
                }
                if (auto it = st.requestCounts.find("bus_embed_prepared_chunks_queued");
                    it != st.requestCounts.end()) {
                    preparedChunksQueued = it->second;
                }
                if (auto it = st.requestCounts.find("title_inflight");
                    it != st.requestCounts.end()) {
                    titleInflight = it->second;
                }
                if (auto it = st.requestCounts.find("title_queue_depth");
                    it != st.requestCounts.end()) {
                    titleQueueDepth = it->second;
                }
                if (auto it = st.requestCounts.find("title_queued"); it != st.requestCounts.end()) {
                    titleQueued = it->second;
                }
                if (auto it = st.requestCounts.find("title_dropped");
                    it != st.requestCounts.end()) {
                    titleDropped = it->second;
                }
                if (auto it = st.requestCounts.find("title_consumed");
                    it != st.requestCounts.end()) {
                    titleConsumed = it->second;
                }

                // Log search tuning state (epic yams-7ez4)
                if (!st.searchTuningState.empty()) {
                    spdlog::info("Search tuning state: {} ({})", st.searchTuningState,
                                 st.searchTuningReason);
                    spdlog::info("Search tuning params:");
                    for (const auto& [k, v] : st.searchTuningParams) {
                        spdlog::info("  {}: {:.4f}", k, v);
                    }
                }

                DebugLogEntry statusEntry;
                statusEntry.query = "__post_ingest_status__";
                statusEntry.returnedPaths.push_back("documents_total=" +
                                                    std::to_string(documentsTotal));
                statusEntry.returnedPaths.push_back("documents_embedded=" +
                                                    std::to_string(documentsEmbedded));
                statusEntry.returnedPaths.push_back("vector_count=" + std::to_string(vectorCount));
                statusEntry.returnedPaths.push_back("bus_embed_prepared_docs_queued=" +
                                                    std::to_string(preparedDocsQueued));
                statusEntry.returnedPaths.push_back("bus_embed_prepared_chunks_queued=" +
                                                    std::to_string(preparedChunksQueued));
                statusEntry.returnedPaths.push_back("title_inflight=" +
                                                    std::to_string(titleInflight));
                statusEntry.returnedPaths.push_back("title_queue_depth=" +
                                                    std::to_string(titleQueueDepth));
                statusEntry.returnedPaths.push_back("title_queued=" + std::to_string(titleQueued));
                statusEntry.returnedPaths.push_back("title_dropped=" +
                                                    std::to_string(titleDropped));
                statusEntry.returnedPaths.push_back("title_consumed=" +
                                                    std::to_string(titleConsumed));
                statusEntry.returnedPaths.push_back("post_ingest_queue_depth=" +
                                                    std::to_string(st.postIngestQueueDepth));
                statusEntry.returnedPaths.push_back(std::string("embedding_available=") +
                                                    (st.embeddingAvailable ? "true" : "false"));
                bool vectorDbReady = st.vectorDbReady;
                if (auto it = st.readinessStates.find("vector_db");
                    it != st.readinessStates.end()) {
                    vectorDbReady = it->second;
                }
                statusEntry.returnedPaths.push_back(std::string("vector_db_ready=") +
                                                    (vectorDbReady ? "true" : "false"));
                statusEntry.returnedPaths.push_back("vector_db_dim=" +
                                                    std::to_string(st.vectorDbDim));
                statusEntry.returnedPaths.push_back("embedding_backend=" + st.embeddingBackend);
                statusEntry.returnedPaths.push_back("embedding_model=" + st.embeddingModel);
                // Search tuning state (epic yams-7ez4)
                statusEntry.returnedPaths.push_back("search_tuning_state=" + st.searchTuningState);
                statusEntry.returnedPaths.push_back("search_tuning_reason=" +
                                                    st.searchTuningReason);

                double tunedKgWeight = 0.0;
                bool tunedGraphRerank = graphRerankRequested;
                if (auto it = st.searchTuningParams.find("kg_weight");
                    it != st.searchTuningParams.end()) {
                    tunedKgWeight = static_cast<double>(it->second);
                }
                if (auto it = st.searchTuningParams.find("enable_graph_rerank");
                    it != st.searchTuningParams.end()) {
                    tunedGraphRerank = it->second > 0.5;
                }
                spdlog::info("[Bench] Effective graph rerank: env={} tuned={} kg_weight={:.4f}",
                             graphRerankRequested ? "on" : "off", tunedGraphRerank ? "on" : "off",
                             tunedKgWeight);

                for (const auto& [k, v] : st.searchTuningParams) {
                    statusEntry.returnedPaths.push_back("tuning_" + k + "=" + std::to_string(v));
                }
                debugLogWriteJsonLine(statusEntry);
            } else {
                spdlog::warn("Status failed (post-ingest): {}", statusRes.error().message);
            }

            // Log GetStatsResponse (extra counters);
            // we also emit structured JSON (additional_stats) for easier parsing.
            yams::daemon::GetStatsRequest statsReq;
            auto statsRes = benchRunSync(client->getStats(statsReq), 10s);
            if (statsRes) {
                const auto& st = statsRes.value();
                spdlog::info("GetStats: totalDocuments={} indexedDocuments={} vectorIndexSize={} "
                             "additionalStats.size={}",
                             st.totalDocuments, st.indexedDocuments, st.vectorIndexSize,
                             st.additionalStats.size());

                DebugLogEntry statsEntry;
                statsEntry.query = "__post_ingest_stats__";
                statsEntry.returnedPaths.push_back("totalDocuments=" +
                                                   std::to_string(st.totalDocuments));
                statsEntry.returnedPaths.push_back("indexedDocuments=" +
                                                   std::to_string(st.indexedDocuments));
                statsEntry.returnedPaths.push_back("vectorIndexSize=" +
                                                   std::to_string(st.vectorIndexSize));

                const auto appendIfPresent = [&](std::string_view key) {
                    auto it = st.additionalStats.find(std::string(key));
                    if (it != st.additionalStats.end()) {
                        statsEntry.returnedPaths.push_back(std::string(key) + "=" + it->second);
                    }
                };
                appendIfPresent("kg_doc_entities_total");
                appendIfPresent("post_title_nl_docs_processed");
                appendIfPresent("post_title_nl_docs_with_entities");
                appendIfPresent("post_title_nl_entities_extracted");
                appendIfPresent("post_deferred_doc_entities_queued");
                appendIfPresent("post_deferred_doc_entity_queue_failures");
                appendIfPresent("kg_write_doc_entities_inserted");
                appendIfPresent("kg_write_deferred_doc_entities_skipped");

                statsEntry.extraFields = {
                    {"additional_stats", st.additionalStats},
                    {"total_documents", st.totalDocuments},
                    {"indexed_documents", st.indexedDocuments},
                    {"vector_index_size", st.vectorIndexSize},
                };

                for (const auto& [k, v] : st.additionalStats) {
                    statsEntry.returnedPaths.push_back(k + "=" + v);
                }

                debugLogWriteJsonLine(statsEntry);
            } else {
                spdlog::warn("GetStats failed: {}", statsRes.error().message);
            }

            auto doSanitySearch = [&](std::string label, std::string query,
                                      std::string searchType) {
                yams::cli::search_runner::DaemonSearchOptions opts;
                opts.query = std::move(query);
                opts.searchType = std::move(searchType);
                opts.limit = 25;
                const auto queryTimeout = configuredBenchQueryTimeout(opts.searchType);
                opts.timeout = queryTimeout;
                opts.allowFuzzyRetry = false;
                opts.allowLiteralTextRetry = false;

                DebugLogEntry sanityEntry;
                sanityEntry.query = std::move(label);

                auto waitBudget =
                    std::chrono::duration_cast<std::chrono::milliseconds>(opts.timeout) +
                    std::chrono::seconds(10);
                if (waitBudget < std::chrono::seconds(10)) {
                    waitBudget = std::chrono::seconds(10);
                }
                auto run = benchRunSync(yams::cli::search_runner::daemon_search(
                                            *client, opts, benchUseStreamingSearch()),
                                        waitBudget);
                if (!run) {
                    sanityEntry.returnedPaths.push_back("error=" + run.error().message);
                    debugLogWriteJsonLine(sanityEntry);
                    return;
                }

                sanityEntry.attempts = run.value().attempts;
                sanityEntry.usedStreaming = run.value().usedStreaming;
                sanityEntry.usedFuzzyRetry = run.value().usedFuzzyRetry;
                sanityEntry.usedLiteralTextRetry = run.value().usedLiteralTextRetry;

                const auto& results = run.value().response.results;
                for (size_t i = 0; i < std::min<size_t>(results.size(), 10); ++i) {
                    sanityEntry.returnedPaths.push_back(results[i].path);
                }

                sanityEntry.returnedDocIds.push_back("result_count=" +
                                                     std::to_string(results.size()));
                debugLogWriteJsonLine(sanityEntry);
            };

            // Keyword search should return something if FTS is populated.
            doSanitySearch("__sanity_keyword_the__", "the", "keyword");

            // Hybrid search without symbol rank to avoid symbol-only decisions.
            doSanitySearch("__sanity_hybrid_the__", "the", "hybrid");

            // If BEIR corpus is used, easily-searchable token is doc id.
            if (useBEIR && beirCorpus && !beirCorpus->dataset.documents.empty()) {
                const auto& firstDocId = beirCorpus->dataset.documents.begin()->first;
                doSanitySearch("__sanity_keyword_docid__", firstDocId, "keyword");
            }
        }

        if (useBEIR) {
            queries = beirCorpus->generateTestQueries();
        } else {
            queries = corpus->generateQueries(numQueries);
        }
        spdlog::info("Generated {} test queries", queries.size());
        setupTimings.setupTotalMs = elapsedMsSince(setupStartedAt);
        if (g_debugOut) {
            DebugLogEntry timingEntry;
            timingEntry.searchType = "benchmark_setup";
            timingEntry.extraFields = {
                {"event", "benchmark_setup_metrics"},
                {"ingestion",
                 {{"cold_performed", setupTimings.coldIngestPerformed},
                  {"admission_ms", setupTimings.admissionMs},
                  {"storage_ready_ms", setupTimings.storageReadyMs},
                  {"pipeline_drain_ms", setupTimings.pipelineDrainMs},
                  {"searchability_ready_ms", setupTimings.searchabilityReadyMs},
                  {"enrichment_ready_ms", setupTimings.enrichmentReadyMs},
                  {"measurement_n", setupTimings.coldIngestPerformed ? 1 : 0}}},
                {"vector_index",
                 {{"prepared", setupTimings.vectorIndexPrepared},
                  {"persisted", setupTimings.vectorIndexPersisted},
                  {"reusable_before", setupTimings.vectorIndexReusableBefore},
                  {"reusable_after", setupTimings.vectorIndexReusableAfter},
                  {"query_ready_after", setupTimings.vectorQueryReadyAfter},
                  {"prepare_ms", setupTimings.vectorIndexPrepareMs},
                  {"persist_ms", setupTimings.vectorIndexPersistMs},
                  {"reusable_probe_ms", setupTimings.vectorIndexReusableProbeMs},
                  {"reusable_probe_count", setupTimings.vectorIndexReusableProbeCount}}},
                {"setup_total_ms", setupTimings.setupTotalMs},
                {"dataset", datasetName},
                {"corpus_size", corpusSize},
                {"daemon_graph",
                 {{"required", g_requireDaemonNativeGraph},
                  {"ready", daemonGraphReady},
                  {"source", "post_ingest_queue_embedding_service"},
                  {"canonicalized", daemonGraphCanonicalized},
                  {"canonical_edges_generated", daemonGraphCanonicalEdgesGenerated},
                  {"canonical_topology_snapshot", daemonGraphCanonicalTopologySnapshot},
                  {"canonical_topology_fingerprint", daemonGraphCanonicalTopologyFingerprint},
                  {"semantic_documents_processed", daemonGraphState.semanticDocumentsProcessed},
                  {"semantic_edges_created", daemonGraphState.semanticEdgesCreated},
                  {"semantic_update_errors", daemonGraphState.semanticUpdateErrors},
                  {"topology_document_nodes", daemonGraphState.topologyDocumentNodes},
                  {"topology_semantic_edges", daemonGraphState.topologySemanticEdges},
                  {"topology_documents_with_neighbors",
                   daemonGraphState.topologyDocumentsWithNeighbors},
                  {"topology_isolated_documents", daemonGraphState.topologyIsolatedDocuments},
                  {"post_ingest_queued", daemonGraphState.postIngestQueued},
                  {"post_ingest_in_flight", daemonGraphState.postIngestInFlight},
                  {"embedding_queued", daemonGraphState.embeddingQueued},
                  {"embedding_in_flight", daemonGraphState.embeddingInFlight},
                  {"write_queued", daemonGraphState.writeQueued},
                  {"write_in_flight", daemonGraphState.writeInFlight}}},
            };
            debugLogWriteJsonLine(timingEntry);
        }
    }

    void teardown() {
        client.reset();
        harness.reset();
        corpus.reset();

        g_debugRunContext.reset();
        g_debugOut = nullptr;
        g_debugFile.reset();
    }
};

static std::unique_ptr<BenchFixture> g_fixture;
void SetupFixture() {
    if (!g_fixture) {
        g_fixture = std::make_unique<BenchFixture>();
        g_fixture->setup();
    }
}
void CleanupFixture() {
    if (g_fixture) {
        g_fixture->teardown();
        g_fixture.reset();
    }
}

static OptimizationRunResult runOptimizationCandidate(const OptimizationCandidate& candidate,
                                                      const std::optional<fs::path>& outputFile) {
    OptimizationRunResult result;
    result.candidate = candidate;
    result.runId = makeRunId(candidate.name);

    std::vector<EnvSetting> candidateOverrides = candidate.envOverrides;
    const char* debugBaseEnv = std::getenv("YAMS_BENCH_DEBUG_FILE");
    if (debugBaseEnv && std::strlen(debugBaseEnv) > 0) {
        const fs::path basePath(debugBaseEnv);
        const fs::path candidateDebugPath =
            makeCandidateDebugPath(basePath, candidate.name, result.runId);
        result.debugFile = candidateDebugPath.string();
        candidateOverrides.push_back({"YAMS_BENCH_DEBUG_FILE", result.debugFile});

        const bool hasExplicitTrace = hasOverrideKey(candidateOverrides, "YAMS_SEARCH_STAGE_TRACE");
        if (!hasExplicitTrace && std::getenv("YAMS_SEARCH_STAGE_TRACE") == nullptr) {
            candidateOverrides.push_back({"YAMS_SEARCH_STAGE_TRACE", "1"});
            result.stageTraceEnabled = true;
        } else {
            result.stageTraceEnabled = envTruthy(std::getenv("YAMS_SEARCH_STAGE_TRACE"));
        }

        const int traceTopNDefault = parseIntEnvOrDefault("YAMS_BENCH_TRACE_TOP_N", 50, 1, 10000);
        const int traceComponentDefault = parseIntEnvOrDefault(
            "YAMS_BENCH_TRACE_COMPONENT_TOP_N", std::min(traceTopNDefault, 50), 1, 10000);

        const bool hasExplicitTraceTop =
            hasOverrideKey(candidateOverrides, "YAMS_SEARCH_STAGE_TRACE_TOP_N");
        if (!hasExplicitTraceTop && std::getenv("YAMS_SEARCH_STAGE_TRACE_TOP_N") == nullptr) {
            candidateOverrides.push_back(
                {"YAMS_SEARCH_STAGE_TRACE_TOP_N", std::to_string(traceTopNDefault)});
        }

        const bool hasExplicitComponentTop =
            hasOverrideKey(candidateOverrides, "YAMS_SEARCH_STAGE_TRACE_COMPONENT_TOP_N");
        if (!hasExplicitComponentTop &&
            std::getenv("YAMS_SEARCH_STAGE_TRACE_COMPONENT_TOP_N") == nullptr) {
            candidateOverrides.push_back(
                {"YAMS_SEARCH_STAGE_TRACE_COMPONENT_TOP_N", std::to_string(traceComponentDefault)});
        }
    } else {
        result.stageTraceEnabled = envTruthy(std::getenv("YAMS_SEARCH_STAGE_TRACE"));
    }

    ScopedEnvOverrides scopedEnv(candidateOverrides);
    result.traceTopN = parseIntEnvOrDefault("YAMS_SEARCH_STAGE_TRACE_TOP_N", 0, 0, 10000);
    result.traceComponentTopN =
        parseIntEnvOrDefault("YAMS_SEARCH_STAGE_TRACE_COMPONENT_TOP_N", 0, 0, 10000);
    g_debugRunContext = DebugRunContext{
        .runId = result.runId,
        .candidate = result.candidate.name,
        .dataset = "",
        .corpusSize = 0,
        .numQueries = 0,
        .topK = 0,
        .traceTopN = result.traceTopN,
        .traceComponentTopN = result.traceComponentTopN,
        .stageTraceEnabled = envTruthy(std::getenv("YAMS_SEARCH_STAGE_TRACE")),
        .debugFile = result.debugFile,
    };
    CleanupFixture();

    try {
        SetupFixture();
        if (!g_fixture || !g_fixture->client) {
            throw std::runtime_error("Benchmark fixture did not initialize a daemon client");
        }

        auto status = benchRunSync(g_fixture->client->status(true), 5s);
        if (status) {
            result.tuningState = status.value().searchTuningState;
            result.tuningReason = status.value().searchTuningReason;
        }
        result.searchEngine =
            std::string(yams::vector::vectorSearchEngineName(benchmarkVectorSearchEngine()));
        if (g_fixture && g_fixture->harness) {
            const auto persisted = inspectPersistedHnswState(g_fixture->harness->dataDir());
            result.vectorsDbBytes = persisted.vectorsDbBytes;
            result.vectorsWalBytes = persisted.vectorsWalBytes;
            result.persistedHnswNodes = persisted.nodeRows;
            result.persistedHnswMetaRows = persisted.metaRows;
            result.persistedVec0Tables = persisted.vec0Tables;
            result.persistedVec0Rows = persisted.vec0Rows;
            result.persistedPqCodes = persisted.pqCodeRows;
            result.persistedPqMeta = persisted.pqMetaRows;
        }

        g_debugRunContext->dataset =
            g_fixture->useBEIR ? g_fixture->beirDatasetName : g_fixture->datasetName;
        g_debugRunContext->corpusSize = g_fixture->corpusSize;
        g_debugRunContext->numQueries = static_cast<int>(g_fixture->queries.size());
        g_debugRunContext->topK = g_fixture->topK;
        g_debugRunContext->traceTopN =
            parseIntEnvOrDefault("YAMS_SEARCH_STAGE_TRACE_TOP_N", result.traceTopN, 0, 10000);
        g_debugRunContext->traceComponentTopN = parseIntEnvOrDefault(
            "YAMS_SEARCH_STAGE_TRACE_COMPONENT_TOP_N", result.traceComponentTopN, 0, 10000);
        g_debugRunContext->stageTraceEnabled = envTruthy(std::getenv("YAMS_SEARCH_STAGE_TRACE"));
        result.traceTopN = g_debugRunContext->traceTopN;
        result.traceComponentTopN = g_debugRunContext->traceComponentTopN;
        result.stageTraceEnabled = g_debugRunContext->stageTraceEnabled;

        const auto hybridStart = std::chrono::steady_clock::now();
        result.hybridMetrics =
            evaluateQueries(*g_fixture->client, g_fixture->benchCorpusDir, g_fixture->queries,
                            g_fixture->topK, "hybrid", &result.hybridDiagnostics);
        const auto hybridEnd = std::chrono::steady_clock::now();
        result.hybridEvalMs =
            std::chrono::duration<double, std::milli>(hybridEnd - hybridStart).count();

        const auto keywordStart = std::chrono::steady_clock::now();
        result.keywordMetrics =
            evaluateQueries(*g_fixture->client, g_fixture->benchCorpusDir, g_fixture->queries,
                            g_fixture->topK, "keyword", &result.keywordDiagnostics);
        const auto keywordEnd = std::chrono::steady_clock::now();
        result.keywordEvalMs =
            std::chrono::duration<double, std::milli>(keywordEnd - keywordStart).count();

        if (result.hybridMetrics.numQueries <= 0) {
            throw std::runtime_error("No benchmark queries generated for optimization candidate");
        }

        const double avgHybridQueryMs =
            result.hybridEvalMs / std::max(1, result.hybridMetrics.numQueries);
        result.objectiveScore =
            computeOptimizationObjective(result.hybridMetrics, result.keywordMetrics,
                                         result.hybridDiagnostics, avgHybridQueryMs);
        result.success = true;
    } catch (const std::exception& e) {
        result.success = false;
        result.errorMessage = e.what();
    }

    g_debugRunContext.reset();
    CleanupFixture();

    if (outputFile.has_value()) {
        appendOptimizationResultJson(*outputFile, result);
    }

    return result;
}

static int runOptimizationLoop() {
    std::vector<OptimizationCandidate> candidates = defaultOptimizationCandidates();
    const auto optProfile = parseOptimizationProfile(std::getenv("YAMS_BENCH_OPT_PROFILE"));
    const bool hasExplicitCandidateFilter =
        std::getenv("YAMS_BENCH_OPT_CANDIDATE") &&
        std::strlen(std::getenv("YAMS_BENCH_OPT_CANDIDATE")) > 0;

    if (!hasExplicitCandidateFilter) {
        std::vector<OptimizationCandidate> filteredByProfile;
        filteredByProfile.reserve(candidates.size());
        for (const auto& candidate : candidates) {
            const bool keep =
                optProfile == OptimizationProfile::All ||
                (optProfile == OptimizationProfile::EnginePolicy &&
                 candidate.enginePolicyCandidate) ||
                (optProfile == OptimizationProfile::Diagnostics && candidate.diagnosticCandidate);
            if (keep) {
                filteredByProfile.push_back(candidate);
            }
        }
        if (!filteredByProfile.empty()) {
            spdlog::info("[OptLoop] No candidate filter set; using optimization profile '{}' with "
                         "{} candidates",
                         optimizationProfileName(optProfile), filteredByProfile.size());
            candidates = std::move(filteredByProfile);
        }
    }

    const auto selectedCandidates = parseCandidateFilter(std::getenv("YAMS_BENCH_OPT_CANDIDATE"));
    if (!selectedCandidates.empty()) {
        std::vector<OptimizationCandidate> filtered;
        filtered.reserve(candidates.size());
        for (const auto& candidate : candidates) {
            if (selectedCandidates.count(candidate.name) > 0) {
                filtered.push_back(candidate);
            }
        }
        candidates = std::move(filtered);
        if (candidates.empty()) {
            std::cerr << "No optimization candidates matched YAMS_BENCH_OPT_CANDIDATE='"
                      << std::getenv("YAMS_BENCH_OPT_CANDIDATE") << "'\n";
            return 2;
        }
    }

    bool pruneKnownBadCandidates = true;
    if (const char* pruneEnv = std::getenv("YAMS_BENCH_OPT_PRUNE_KNOWN_BAD"); pruneEnv) {
        pruneKnownBadCandidates = envTruthy(pruneEnv);
    }

    if (pruneKnownBadCandidates && selectedCandidates.empty()) {
        static const std::unordered_set<std::string> kKnownBadCandidates = {
            "mixed_precision_rrf_neighbor_t92_p80_k14",
            "mixed_precision_rrf_neighbor_t92_p78_k16",
            "mixed_precision_rrf_neighbor_t90_p84_k18",
            "mixed_ablation_disable_graph_rerank",
        };

        const auto beforeCount = candidates.size();
        candidates.erase(std::remove_if(candidates.begin(), candidates.end(),
                                        [](const OptimizationCandidate& candidate) {
                                            return kKnownBadCandidates.count(candidate.name) > 0;
                                        }),
                         candidates.end());

        const auto removed = beforeCount - candidates.size();
        if (removed > 0) {
            spdlog::info("[OptLoop] Pruned {} known low-value candidates (set "
                         "YAMS_BENCH_OPT_PRUNE_KNOWN_BAD=0 to disable)",
                         removed);
        }
    }

    if (const char* maxCandidatesEnv = std::getenv("YAMS_BENCH_OPT_MAX_CANDIDATES")) {
        try {
            const auto parsed = std::max(1, std::stoi(maxCandidatesEnv));
            if (static_cast<std::size_t>(parsed) < candidates.size()) {
                candidates.resize(static_cast<std::size_t>(parsed));
            }
        } catch (...) {
            spdlog::warn("[OptLoop] Invalid YAMS_BENCH_OPT_MAX_CANDIDATES='{}', using default {}",
                         maxCandidatesEnv, candidates.size());
        }
    }

    std::optional<fs::path> outputFile;
    if (const char* outputEnv = std::getenv("YAMS_BENCH_OPT_RESULTS_FILE");
        outputEnv && std::strlen(outputEnv) > 0) {
        outputFile = fs::path(outputEnv);
        const bool appendMode = envTruthy(std::getenv("YAMS_BENCH_OPT_APPEND_RESULTS"));
        std::ofstream probe(*outputFile, appendMode ? (std::ios::out | std::ios::app)
                                                    : (std::ios::out | std::ios::trunc));
        if (!probe.is_open()) {
            spdlog::warn("[OptLoop] Could not create optimization results file: {}",
                         outputFile->string());
            outputFile.reset();
        } else {
            spdlog::info("[OptLoop] Writing optimization results to {} ({})", outputFile->string(),
                         appendMode ? "append" : "truncate");
        }
    }

    std::cout << "\n" << std::string(78, '=') << "\n";
    std::cout << "            RETRIEVAL OPTIMIZATION LOOP (code/mixed first)\n";
    std::cout << std::string(78, '=') << "\n";
    std::cout << "Profile: " << optimizationProfileName(optProfile)
              << (hasExplicitCandidateFilter ? " (explicit candidate filter)" : "") << "\n";

    std::vector<OptimizationRunResult> allResults;
    allResults.reserve(candidates.size());

    for (std::size_t i = 0; i < candidates.size(); ++i) {
        const auto& candidate = candidates[i];
        spdlog::info("[OptLoop] Candidate {}/{}: {} - {}", i + 1, candidates.size(), candidate.name,
                     candidate.description);

        auto result = runOptimizationCandidate(candidate, outputFile);
        allResults.push_back(result);

        if (!result.success) {
            std::cout << "\n  [" << (i + 1) << "/" << candidates.size() << "] " << candidate.name
                      << " -> FAILED: " << result.errorMessage << "\n";
            continue;
        }

        const double avgMs = result.hybridEvalMs / std::max(1, result.hybridMetrics.numQueries);
        const double mrrDelta = result.hybridMetrics.mrr - result.keywordMetrics.mrr;
        std::cout << "\n  [" << (i + 1) << "/" << candidates.size() << "] " << candidate.name
                  << "\n";
        std::cout << "    objective=" << std::fixed << std::setprecision(4) << result.objectiveScore
                  << "  hybrid_mrr=" << result.hybridMetrics.mrr
                  << "  keyword_mrr=" << result.keywordMetrics.mrr << "  mrr_delta=" << std::showpos
                  << std::setprecision(4) << mrrDelta << std::noshowpos
                  << "  dup@k=" << std::setprecision(4) << result.hybridMetrics.duplicateRateAtK
                  << "  avg_hybrid_ms=" << std::setprecision(1) << avgMs << "\n";
        const auto hybridDiag = queryDiagnosticsToJson(result.hybridDiagnostics);
        std::cout << "    trace_cov=" << std::setprecision(3)
                  << hybridDiag["trace_coverage"].get<double>() << "  sem_rescue_mean="
                  << hybridDiag["semantic_rescue_rate"]["mean"].get<double>()
                  << "  ca_apply_rate=" << hybridDiag["compressed_ann_apply_rate"].get<double>()
                  << "  vec_only_below_mean="
                  << hybridDiag["vector_only_below_threshold"]["mean"].get<double>()
                  << "  no_relevant_hit_rate="
                  << hybridDiag["query_without_relevant_hit_rate"].get<double>()
                  << "  graph_apply_rate=" << hybridDiag["graph_rerank_apply_rate"].get<double>()
                  << "  miss_pre_fusion_rate="
                  << hybridDiag["miss_missing_pre_fusion_rate"].get<double>() << "\n";
        std::cout << "    timing_tradeoffs=" << summarizeTimingTradeoffs(hybridDiag) << "\n";
        std::cout << "    ca_skip_reasons=" << hybridDiag["compressed_ann_skip_reasons"].dump()
                  << "\n";
        std::cout << "    stage_tradeoffs=" << summarizeStageTradeoffs(hybridDiag) << "\n";
        std::cout << "    stage_quality=" << summarizeStageMetricGaps(hybridDiag) << "\n";
        if (result.traceTopN > 0 || result.traceComponentTopN > 0) {
            std::cout << "    trace_top_n=" << result.traceTopN
                      << "  trace_component_top_n=" << result.traceComponentTopN << "\n";
        }
        std::cout << "    tuning_state="
                  << (result.tuningState.empty() ? "<unknown>" : result.tuningState) << "\n";
        if (!result.debugFile.empty()) {
            std::cout << "    debug_file=" << result.debugFile << "\n";
        }
    }

    std::vector<OptimizationRunResult> successful;
    for (const auto& result : allResults) {
        if (result.success) {
            successful.push_back(result);
        }
    }

    if (successful.empty()) {
        std::cout << "\nNo successful optimization candidates completed.\n";
        return 2;
    }

    std::sort(successful.begin(), successful.end(),
              [](const OptimizationRunResult& a, const OptimizationRunResult& b) {
                  return a.objectiveScore > b.objectiveScore;
              });

    const auto& best = successful.front();
    g_final_metrics = best.hybridMetrics;
    g_keyword_metrics = best.keywordMetrics;

    std::cout << "\n" << std::string(78, '-') << "\n";
    std::cout << "Top candidates by objective\n";
    std::cout << std::string(78, '-') << "\n";
    for (std::size_t i = 0; i < successful.size(); ++i) {
        const auto& result = successful[i];
        const double avgMs = result.hybridEvalMs / std::max(1, result.hybridMetrics.numQueries);
        const double mrrDelta = result.hybridMetrics.mrr - result.keywordMetrics.mrr;
        std::cout << "  " << (i + 1) << ". " << result.candidate.name
                  << "  objective=" << std::fixed << std::setprecision(4) << result.objectiveScore
                  << "  mrr=" << result.hybridMetrics.mrr
                  << "  ndcg=" << result.hybridMetrics.ndcgAtK << "  mrr_delta=" << std::showpos
                  << std::setprecision(4) << mrrDelta << std::noshowpos
                  << "  dup@k=" << std::setprecision(4) << result.hybridMetrics.duplicateRateAtK
                  << "  avg_ms=" << std::setprecision(1) << avgMs << "\n";
    }

    std::cout << "\nBest candidate: " << best.candidate.name << "\n";
    std::cout << "  " << best.candidate.description << "\n";

    std::ostringstream envLine;
    for (const auto& setting : best.candidate.envOverrides) {
        if (setting.value.has_value()) {
            envLine << setting.key << "=" << *setting.value << " ";
        }
    }
    std::cout << "  Recommended env overrides: " << envLine.str() << "\n";

    if (outputFile.has_value()) {
        std::cout << "  Saved per-run JSONL to: " << outputFile->string() << "\n";
    }

    const char* datasetEnv = std::getenv("YAMS_BENCH_DATASET");
    if (!(datasetEnv && std::strlen(datasetEnv) > 0)) {
        std::cout << "  Next: validate this winner on a harder dataset, e.g. "
                  << "YAMS_BENCH_DATASET=synthetic-hard or YAMS_BENCH_DATASET=scifact ...\n";
    }

    std::cout << std::string(78, '=') << "\n";
    return 0;
}

void BM_RetrievalQuality(benchmark::State& state) {
    SetupFixture();
    auto& fixture = *g_fixture;
    RetrievalMetrics metrics;
    for (auto _ : state) {
        std::vector<double> warmupLatencyMs;
        std::vector<TestQuery> failedWarmupQueries;
        evaluateQueries(*fixture.client, fixture.benchCorpusDir, fixture.queries, fixture.topK,
                        "hybrid", nullptr, false, &warmupLatencyMs, &failedWarmupQueries);
        const auto retriedWarmupQueries = failedWarmupQueries.size();
        if (!failedWarmupQueries.empty()) {
            std::vector<TestQuery> retryFailures;
            evaluateQueries(*fixture.client, fixture.benchCorpusDir, failedWarmupQueries,
                            fixture.topK, "hybrid", nullptr, false, &warmupLatencyMs,
                            &retryFailures);
            failedWarmupQueries = std::move(retryFailures);
        }
        if (g_debugOut) {
            DebugLogEntry warmupEntry;
            warmupEntry.searchType = "benchmark_warmup";
            warmupEntry.extraFields = {
                {"event", "query_warmup_summary"},
                {"query_count", fixture.queries.size()},
                {"completed_queries", warmupLatencyMs.size()},
                {"first_query_latency_ms", warmupLatencyMs.empty() ? 0.0 : warmupLatencyMs.front()},
                {"retried_queries", retriedWarmupQueries},
                {"retry_failed_queries", failedWarmupQueries.size()},
            };
            debugLogWriteJsonLine(warmupEntry);
        }
        g_final_hybrid_diagnostics = QueryDiagnosticsSummary{};
        metrics = evaluateQueries(*fixture.client, fixture.benchCorpusDir, fixture.queries,
                                  fixture.topK, "hybrid", &g_final_hybrid_diagnostics);
        benchmark::DoNotOptimize(metrics);
    }

    // Store metrics globally for post-teardown summary
    g_final_metrics = metrics;
    g_benchmark_search_engine =
        std::string(yams::vector::vectorSearchEngineName(benchmarkVectorSearchEngine()));
    if (fixture.harness) {
        g_final_vector_index_state = inspectPersistedHnswState(fixture.harness->dataDir());
    }

    state.counters["MRR"] = metrics.mrr;
    state.counters["Recall@K"] = metrics.recallAtK;
    state.counters["Precision@K"] = metrics.precisionAtK;
    state.counters["nDCG@K"] = metrics.ndcgAtK;
    state.counters["MAP"] = metrics.map;
    state.counters["num_queries"] = metrics.numQueries;

    // Also evaluate keyword-only (FTS5) for component isolation
    // This helps diagnose whether low MRR is from FTS5 or vector search
    spdlog::info("=== Evaluating KEYWORD-ONLY (FTS5) for component isolation ===");
    g_final_keyword_diagnostics = QueryDiagnosticsSummary{};
    g_keyword_metrics = evaluateQueries(*fixture.client, fixture.benchCorpusDir, fixture.queries,
                                        fixture.topK, "keyword", &g_final_keyword_diagnostics);

    if (g_debugOut) {
        DebugLogEntry summaryEntry;
        summaryEntry.searchType = "benchmark_summary";
        summaryEntry.extraFields = {
            {"event", "hybrid_summary"},
            {"hybrid_metrics",
             {{"mrr", metrics.mrr},
              {"recall_at_k", metrics.recallAtK},
              {"precision_at_k", metrics.precisionAtK},
              {"ndcg_at_k", metrics.ndcgAtK},
              {"map", metrics.map}}},
            {"hybrid_diag_summary", queryDiagnosticsToJson(g_final_hybrid_diagnostics)},
            {"keyword_metrics",
             {{"mrr", g_keyword_metrics.mrr},
              {"recall_at_k", g_keyword_metrics.recallAtK},
              {"precision_at_k", g_keyword_metrics.precisionAtK},
              {"ndcg_at_k", g_keyword_metrics.ndcgAtK},
              {"map", g_keyword_metrics.map}}},
            {"keyword_diag_summary", queryDiagnosticsToJson(g_final_keyword_diagnostics)},
        };
        debugLogWriteJsonLine(summaryEntry);
    }

    state.counters["MRR_keyword"] = g_keyword_metrics.mrr;
    state.counters["Recall_keyword"] = g_keyword_metrics.recallAtK;

    if (benchEvaluateGrepBaseline()) {
        spdlog::info("=== Evaluating GREP literal baseline for exact-match comparison ===");
        g_grep_metrics = evaluateGrepQueries(*fixture.client, fixture.queries, fixture.topK);
        state.counters["MRR_grep"] = g_grep_metrics.mrr;
        state.counters["Recall_grep"] = g_grep_metrics.recallAtK;
    } else {
        spdlog::info("=== Skipping GREP literal baseline for this benchmark plan ===");
    }

    if (g_debugOut) {
        const auto peakRssMb = yams::bench::processPeakRssMb();
        DebugLogEntry resourceEntry;
        resourceEntry.searchType = "benchmark_summary";
        resourceEntry.extraFields = {
            {"event", "process_resource_metrics"},
            {"process",
             {{"peak_rss_observed", peakRssMb.has_value()},
              {"peak_rss_mb", peakRssMb.value_or(0.0)}}},
        };
        debugLogWriteJsonLine(resourceEntry);
    }
}
// Retrieval quality is a long-running, end-to-end evaluation.
// Force a single iteration to avoid repeated full-corpus evaluations.
BENCHMARK(BM_RetrievalQuality)->Iterations(1);

int main(int argc, char** argv) {
    consumeXplanConfigArguments(argc, argv);
    if (envTruthy(std::getenv("YAMS_BENCH_OPT_LOOP"))) {
        return runOptimizationLoop();
    }

    benchmark::Initialize(&argc, argv);
    if (benchmark::ReportUnrecognizedArguments(argc, argv))
        return 1;
    benchmark::RunSpecifiedBenchmarks();
    benchmark::Shutdown();
    CleanupFixture();

    // Re-print summary after all teardown logs
    // This ensures results are visible even when daemon teardown is verbose
    std::cout << "\n" << std::string(70, '=') << "\n";
    std::cout << "              RETRIEVAL QUALITY BENCHMARK RESULTS\n";
    std::cout << std::string(70, '=') << "\n";
    std::cout << std::fixed << std::setprecision(4);

    // Hybrid search results
    std::cout << "\n  --- HYBRID SEARCH (text + vector) ---\n";
    std::cout << "  Search engine:                    " << std::setw(10)
              << g_benchmark_search_engine << "\n";
    std::cout << "  MRR (Mean Reciprocal Rank):     " << std::setw(10) << g_final_metrics.mrr
              << "\n";
    std::cout << "  Recall@K:                       " << std::setw(10) << g_final_metrics.recallAtK
              << "\n";
    std::cout << "  Precision@K:                    " << std::setw(10)
              << g_final_metrics.precisionAtK << "\n";
    std::cout << "  nDCG@K (Normalized DCG):        " << std::setw(10) << g_final_metrics.ndcgAtK
              << "\n";
    std::cout << "  MAP (Mean Average Precision):   " << std::setw(10) << g_final_metrics.map
              << "\n";
    const auto hybridDiag = queryDiagnosticsToJson(g_final_hybrid_diagnostics);
    std::cout << "  Stage quality gaps:             " << summarizeStageMetricGaps(hybridDiag)
              << "\n";
    std::cout << "  vectors.db bytes:                " << std::setw(10)
              << g_final_vector_index_state.vectorsDbBytes << "\n";
    std::cout << "  vectors.db-wal bytes:            " << std::setw(10)
              << g_final_vector_index_state.vectorsWalBytes << "\n";
    std::cout << "  persisted_hnsw_nodes:            " << std::setw(10)
              << g_final_vector_index_state.nodeRows << "\n";
    std::cout << "  persisted_hnsw_meta_rows:        " << std::setw(10)
              << g_final_vector_index_state.metaRows << "\n";
    std::cout << "  persisted_vec0_tables:           " << std::setw(10)
              << g_final_vector_index_state.vec0Tables << "\n";
    std::cout << "  persisted_vec0_rows:             " << std::setw(10)
              << g_final_vector_index_state.vec0Rows << "\n";
    std::cout << "  persisted_simeon_pq_codes:       " << std::setw(10)
              << g_final_vector_index_state.pqCodeRows << "\n";
    std::cout << "  persisted_simeon_pq_meta:        " << std::setw(10)
              << g_final_vector_index_state.pqMetaRows << "\n";

    // Keyword-only search results (FTS5 isolation)
    std::cout << "\n  --- KEYWORD SEARCH (FTS5 only) ---\n";
    std::cout << "  MRR (Mean Reciprocal Rank):     " << std::setw(10) << g_keyword_metrics.mrr
              << "\n";
    std::cout << "  Recall@K:                       " << std::setw(10)
              << g_keyword_metrics.recallAtK << "\n";
    std::cout << "  Precision@K:                    " << std::setw(10)
              << g_keyword_metrics.precisionAtK << "\n";
    std::cout << "  nDCG@K (Normalized DCG):        " << std::setw(10) << g_keyword_metrics.ndcgAtK
              << "\n";
    std::cout << "  MAP (Mean Average Precision):   " << std::setw(10) << g_keyword_metrics.map
              << "\n";

    // Grep baseline results
    std::cout << "\n  --- GREP BASELINE (literal exact match) ---\n";
    std::cout << "  MRR (Mean Reciprocal Rank):     " << std::setw(10) << g_grep_metrics.mrr
              << "\n";
    std::cout << "  Recall@K:                       " << std::setw(10) << g_grep_metrics.recallAtK
              << "\n";
    std::cout << "  Precision@K:                    " << std::setw(10)
              << g_grep_metrics.precisionAtK << "\n";
    std::cout << "  nDCG@K (Normalized DCG):        " << std::setw(10) << g_grep_metrics.ndcgAtK
              << "\n";
    std::cout << "  MAP (Mean Average Precision):   " << std::setw(10) << g_grep_metrics.map
              << "\n";

    // Component comparison summary
    std::cout << "\n  --- COMPONENT COMPARISON ---\n";
    std::cout << "  Number of queries evaluated:    " << std::setw(10) << g_final_metrics.numQueries
              << "\n";
    auto describeDelta = [](double delta, std::string_view positive, std::string_view negative) {
        constexpr double kTieEpsilon = 1e-9;
        if (std::abs(delta) <= kTieEpsilon) {
            return std::string(" (tied)");
        }
        return std::string(delta > 0 ? positive : negative);
    };
    double keywordMrrDelta = g_final_metrics.mrr - g_keyword_metrics.mrr;
    double grepMrrDelta = g_final_metrics.mrr - g_grep_metrics.mrr;
    std::cout << "  MRR delta (hybrid - keyword):   " << std::setw(10) << keywordMrrDelta
              << describeDelta(keywordMrrDelta, " (hybrid better)", " (keyword better)") << "\n";
    std::cout << "  MRR delta (hybrid - grep):      " << std::setw(10) << grepMrrDelta
              << describeDelta(grepMrrDelta, " (hybrid better)", " (grep better)") << "\n";
    std::cout << std::string(70, '=') << "\n";

    return 0;
}