Commit graph

35 commits

Author SHA1 Message Date
Trevon
d398556ee5
fix(tests): replace frozen expectations and harden release gates (#323)
* test(search,daemon,storage): assert behaviour instead of frozen literals

Several suites encoded exact internal values that legitimate tuning and
ranking changes are allowed to move: SCIENTIFIC-era profile weights and
rrfK values, corpus-statistic figures, and hardcoded timeout/cancellation
numbers. They failed on every platform after those changes landed, so the
real behaviour regressions they should catch were hidden behind noise.

Replace the frozen literals with contract assertions: weights are finite,
non-negative and normalize, state selection still holds, capability-gated
sources stay zeroed, and hybrid results keep matching canonical hash/path
sets. Deadlines are not widened and the daemon paths they cover are
unchanged.

Also add independent corpus and adapter oracles, deterministic collector
cancellation and late-result gates, and synchronize ServiceManager
shutdown observation, so the tests fail for the behaviour they name.

The portability allowlist keeps its two reviewed raw test-env reads; only
their line numbers moved.

Signed-off-by: trvon <git@trevon.dev>

* ci(tests): summarise Meson failures without flooding the log

A failing test run printed the whole Meson suite output, so the actual
failing test names and their assertion messages were buried and the
uploaded logs were dominated by passing-test chatter.

Add a bounded reporter that extracts the failing test names plus their
surrounding diagnostics, keeps an overall cap on emitted lines, and is
unit-tested against representative Meson output. Wire it into the Tests
workflow so failures stay readable.

Signed-off-by: trvon <git@trevon.dev>

* build(deb): validate candidate identity, mapping and upgrade ordering

The Debian packaging scripts took filenames and versions on trust, so a
misnamed candidate or a wrong package ordering could pass validation while
the real install path was never exercised.

Fail closed on candidate identity, version and architecture, verify the
package-to-source mapping, seed the legacy-only layout, wait on the actual
services, and assert install/upgrade/remove ordering for both Debian and
RPM in an offline container. Cases that cannot be proven on a host are
reported as skipped rather than silently passing.

Signed-off-by: trvon <git@trevon.dev>

---------

Signed-off-by: trvon <git@trevon.dev>
2026-10-19 19:16:57 -06:00
trvon
ca944de51b
build: trim Meson options and build only the Boost libraries YAMS links
meson_options.txt had 47 options. Several were read but never set by
any workflow, script or doc, several only fed test-lane timeouts, and
enable-{tsan,asan,ubsan} duplicated b_sanitize. 47 -> 33.

Removed (behavior kept at the previous default everywhere):
- require-fts5 (configure now always errors on a SQLite without FTS5,
  the old default), conan-generators-dir, cli11-cmake-path,
  onnxruntime-cmake-path (Conan/CMake discovery under the build dir is
  unchanged), split-debug.
- unit-timeout, integration-timeout, integration-ui-timeout,
  integration-smoke-timeout, integration-daemon-timeout and stress-iters:
  replaced by the same constants at their call sites (smoke keeps its
  test-timeout-scale multiplier). Only meson/profiles/ci-fast.ini and
  nightly-soak.ini set them, and nothing used those profiles; both go.
- enable-integration-services/-smoke and enable-daemon-integration:
  folded into enable-integration-tests. Debug builds still register every
  integration suite; nothing set the sub-toggles.

Kept, because third_party/symspell's meson.build reads them:
bench-timeout, enable-tsan and enable-asan. YAMS itself now derives all
sanitizer handling (extra flags, TSan runtime links, test timeouts) from
b_sanitize; setup.sh still mirrors its choice into enable-tsan/asan for
the submodule, and the CI ASan lane keeps -Denable-asan=true for the
same reason. enable-ubsan is a deprecated no-op (a warning if it
disagrees with b_sanitize) so build dirs configured with it still
regenerate; the UBSan lane passes only -Db_sanitize=undefined and still
gets -fno-sanitize-recover=all (standalone UBSan aborts; ASan+UBSan stays
recoverable, as before).

Conan: the without_* Boost list was applied only to iOS/Android. YAMS
uses Boost.Asio (header-only) and links only boost_system/boost_thread
on every platform (asio/ssl uses OpenSSL directly; no spawn/context), so
the list now applies everywhere. Debug Boost package on grim: 45 static
libraries / 229 MiB -> 10 / 6.8 MiB (Release: 45 / 30 MiB before).

Verified on grim: ./setup.sh Debug --no-tsan --with-tests reconfigures
an existing build/debug and builds; an existing build/release (configured
with -Denable-tsan/-Denable-asan) regenerates.

Signed-off-by: trvon <me@trevon.dev>
2026-10-01 18:52:34 -06:00
trvon
934239cd20
build(tests): stop integration/search from replacing the shared Catch2 main
tests/integration/search/meson.build reassigned catch2_main_dep to Catch2's
own catch2-with-main. Meson variables are global, so every test executable
defined after that subdir (catch2_search_service among them) linked Catch2's
main instead of tests/support/catch2_main.cpp. The Windows hang stack showed
main coming from Catch2's catch_main.cpp, which is why the CRT report setup
in the shared main never ran there.

Use the shared catch2_main_dep for the hybrid search integration binaries
too.

Signed-off-by: trvon <me@trevon.dev>
2026-10-01 10:35:44 -06:00
trvon
c39ed84bf7
refactor(plugins)!: remove the symbol_extractor_v1 plugin ABI
Migration 40 dropped the symbol tables and graph edges, but the daemon
could still adopt an external symbol_extractor_v1 plugin (for example a
0.19 plugin left in a user plugin directory) and rebuild them.

Remove the interface header, the ABI adapter, plugin adoption, the
EntityGraphService extract-and-write path, the post-ingest symbol
channel, the write-coordinator symbol ops, and the KG-store symbol
metadata and extraction-state API. The ABI loader and the external host
now refuse a plugin that declares the interface (or the legacy
symbol_extraction capability) with a one-time warning. Status no longer
reports symbol extractors, generated configs no longer write
[plugins.symbol_extraction] (an existing section still parses), and
the benchmark suite drops symbol_extraction_bench.

Tests that exercised the dropped tables or the v39 schema template are
removed; the rest run against the current schema.

BREAKING CHANGE: code-symbol extraction is gone. Removed: the
symbol_extractor_v1 plugin ABI, `yams config grammar` (list, download,
path, auto-enable, auto-disable), the grammar steps in `yams init`, the
meson option `plugin-symbols`, the conan option
`enable_symbol_extraction`, and the Windows installer SymbolPlugin
component. Databases migrate to schema 41; a v0.19 binary refuses to
open them, and symbol data dropped by migration 40 cannot be recovered.
2026-09-22 13:30:35 -06:00
trvon
7485b482f8
fix(build): restore clean test and benchmark links 2026-08-06 09:59:07 -04:00
trvon
5066fc0893
test: isolate process environment 2026-08-04 21:31:39 -04:00
trvon
77c4bdff40
test: isolate integration state 2026-08-03 15:40:16 -04:00
Trevon
a3d065dd8d
feat(search): make topology-assisted retrieval the default (#57)
* fix(release): repair package repo publish

Arch repo metadata and R2 uploads need to be reproducible from CI, with retry hardening for transient Cloudflare failures.

* fix(daemon): stop shutdown log storm

Init waiter must treat ShuttingDown as terminal so daemon shutdown tests do not flood Meson logs while the daemon is stopping.

* refactor(cli): delegate serve to MCP binary

Keep yams serve UX while removing MCP server linkage from yams-cli. The standalone MCP binary owns stdio serving and exits on stdin EOF.

* refactor(cli): move daemon path helpers

Keep CLI path resolution out of YamsDaemon so later link cuts can separate CLI and daemon internals. Full yams_daemon removal still needs a socket-only daemon-client split.

* refactor(daemon): split embedded client

* perf(search): add lean-guided benchmark gates

Add Lean topology/search models, ingestion ablation docs, and focused regression tests for topology and compression threshold behavior.

Extract search observability, keep benchmark-only ablation controls, and make retrieval quality benchmarks default to Simeon while preserving explicit ONNX opt-in.

* refactor(config): move daemon policies

* refactor(daemon): extract plugin runtime

* refactor(daemon): untangle service coordinators

Untangle CLI/MCP from daemon service coordinators and the daemon static lib.

- MetadataRepository uses a daemon-neutral tree-diff callback. The
  GraphComponent wrapper moves to src/daemon/components/metadata_graph_bridge.cpp,
  owned by the daemon library.
- WriteCoordinator moves to a dedicated build-only yams_write_coordinator
  static lib. Drop ResourceGovernor coupling inside the writer loop; batch
  sizing still respects config.maxBatchSize.
- AppContext gains enqueuePostIngest callback. ServiceManager wires it to
  its own enqueuePostIngest; app services no longer call ServiceManager
  directly.
- Embedding repair uses BulkIngestLease/BeginBulkIngestCallback instead of
  concrete VectorIndexCoordinator::BulkScope. Daemon dispatchers provide a
  lease factory backed by the real coordinator.
- CLI daemon_command uses config helpers instead of YamsDaemon::getXDGRuntimeDir.
- Remove explicit dependency('yams_daemon') from src/cli and tools/yams-mcp.
- Declare missing yams_extraction/yams_ingest deps on yams_app_services so
  app services link cleanly without daemon.

Validated:
  meson compile -C build/release -j4 yams-daemon yams-cli yams-mcp-server
  ninja -C build/release -t commands tools/yams-cli/yams-cli tools/yams-mcp/yams-mcp-server | grep -c libyams_daemon.a -> 0
  yams-cli --version, yams-mcp-server init, yams serve --help smoke tests

Size drop on macOS release: yams-cli 41M -> 32M, yams-mcp-server 37M -> 22M.

* fix(cli): keep stdin add local fallback

No embedded daemon now. When yams add - buffers stdin and daemon IPC is missing, store via local app services instead of failing socket_missing.

Validated:
  meson compile -C build/debug -j4 yams-cli catch2_cli_commands
  MESON_BUILD_ROOT=/Users/trevon/work/tools/yams/build/debug build/debug/tests/catch2_cli_commands 'AddCommand - reads from piped stdin and stores content'
  MESON_BUILD_ROOT=/Users/trevon/work/tools/yams/build/debug build/debug/tests/catch2_cli_commands
  meson compile -C build/release -j4 yams-cli yams-mcp-server
  meson compile -C build/asan-api -j2 yams-cli catch2_cli_commands
  MESON_BUILD_ROOT=/Users/trevon/work/tools/yams/build/asan-api ASAN_OPTIONS=halt_on_error=1:abort_on_error=1:print_summary=1 build/asan-api/tests/catch2_cli_commands 'AddCommand - reads from piped stdin and stores content'
  ninja -C build/release -t commands tools/yams-cli/yams-cli tools/yams-mcp/yams-mcp-server | grep libyams_daemon.a -> no output

* feat(bench): add xplan multi-arm experiment harness

Unified plan runner, ablation axes, REPORT/ablation docs, and
KPI snapshot so optimization loops stop living in shell matrices.

* feat(formal): expand topology/search Lean contracts

Boundary models for search provenance, construction gates,
and cluster/route objectives so Lean guides correctness while
xplan ranks performance levers.

* feat(search,topology): construction purity + graph expansion path

Raise topology build defaults (min edge 0.25, max component 64) and
split oversized CC pieces so hybrid assist is quality-positive on
scifact. Add GraphNeighbors expansion with medoid-anchor fallback,
structured helpers instead of nested session logic, and BEIR-default
xplan plans. Search engine extraction (fanout/classic pipeline) rides
along as the integration surface for routing.

* feat(topology): add KMeans engine and SGC identity contracts

Register kmeans in the factory with deterministic spherical k-means
over embeddings, and enforce SGC document-identity invariants in
debug builds with matching unit coverage.

* feat(daemon): topology readiness gates and selectable reranker

Drive topologyReady from published epoch/freshness/rebuild/dirty
ingest state (not just KG drain), surface those fields in search
stats, and wire onnx|simeon|auto|none cross-reranker selection.

* chore(search): drop meta_path tuner knobs

Meta-path routing is gone; remove dead TunedParams fields and the
ConfigResolver test for [search.meta_path].

* feat(bench): add topology_purity_validate plan

Repeats=3 validation matrix for construction-purity winners vs
topo_off so MRR deltas can clear run-to-run noise.

* chore: format add_command and config include order

Mechanical clang-format / include reorder only; no behavior change.

* feat(bench): decision-grade xplan loop for search engine

Document search-engine measurement in AGENTS; harden xplan with
repeats=3 plans, quality×latency primaries, mechanism metrics from
debug.jsonl, multi-rep log promotion, and archive superseded topology
plans.

* feat(graph): denser product semantic_neighbor topK

Raise default YAMS_GRAPH_SEMANTIC_TOPK fallback from 4 to 8 so product
graphs leave fewer degree-0 docs for GraphNeighbors expansion.

* feat(search): extract topology assist and cross-rerank seams

Pull topology assist into search_topology_stage (seed merge, skip
reasons, optional vector seed probe default 0). Extract cross_rerank
compute from search_engine. Wire probe via typed config/ConfigResolver.

* feat(bench): product-path search engine ablation plans

Add topology-off component, vector-weight, and tiered-execution xplan
plans (repeats=3) and wire them into the AGENTS measurement loop table.

* fix(ci): repair pre-push fallbacks

* feat(bench): lock-free mid-run builds + multi-corpus gates

xplan skips meson rebuild when the quality binary exists (flock +
YAMS_BENCH_FORCE_BUILD override) to stop multi-arm link races. Add
graph_vector weight and nfcorpus transfer-gate plans; document in AGENTS.

* fix(daemon): keep SearchEngine alive via shared_ptr cache

getCachedEngine previously published a raw pointer that metrics polling
used through rebuild, racing destructor of SearchEngine::Impl (TSAN).
Store and return a shared_ptr snapshot so diagnostic readers pin the
engine for the duration of getConfig/health checks.

Also adds the cautious vectorWeight 0.30→0.20 multi-corpus xplan plan.

* feat(search): route vectors through cached topology

Build and reuse validated topology snapshots, rank routed members by query similarity, and narrow the vector leg to the accepted document set with explicit work diagnostics.

Remove the retired HDBSCAN engine and vendor dependency, preserve typed topology policy through search tuning, and cover the runtime/configuration contracts.

* feat(bench): consolidate search decision plans

Enforce deterministic experiment identity and declared baselines, expose routed/global vector work metrics, and register the focused benchmark contracts.

Promote the compact repeats=3 routing-budget gate, archive superseded topology mechanism screens, and add multi-corpus product calibration plans.

* feat(search): refine topology vector routing

* fix(search): propagate daemon readiness

* feat(bench): measure generalized memory health

* fix(cli): honor in-process fallbacks

* ci: harden smolvm debug builds

* perf(search): route topology through filtered ANN

* feat(bench): measure read-write pressure

* perf(metadata): index symbol lookups on read pool

* fix(daemon): isolate startup reads and maintenance

* feat(bench): replay isolated generalized corpora

* feat(search): add evidence routing pipeline

Replace the blocking smolvm pre-push path with host ASan/TSan validation, harden sanitizer-sensitive smoke tests, and add recovery cleanup for malformed SQLite WAL sidecars.

* refactor(search): unify topology evidence path

Remove classic and sidecar fusion lanes so topology augments the recall-preserving ANN and lexical candidate pool through one product path.

* refactor(bench): prune superseded search lanes

Measure the topology-plus-ANN product path with stable experiment identity and remove obsolete sidecar and tiered controls.

* docs(search): retire stale experiment notes

Keep the benchmark handoff focused on the topology-plus-ANN product lane and its active decision plans.

* refactor(search): prune dead search surfaces

Remove unused fusion, reranker, policy, and router abstractions.
Bound topology materialization and keep document trace payloads opt-in.

* fix(cli): clear build warnings

* fix(xplan): reject stale run identity

* refactor(search)!: remove legacy query stack

Replace the unused AST/ranker/post-processor surface with focused facet aggregation used by product search.

BREAKING CHANGE: removes query parser, result ranker, search filter, and SearchResults container APIs from yams_search.

* refactor(search): type value stage traces

Remove synthetic ComponentResult markers for embedding and concept stages. Preserve failure and timeout states instead of overwriting them with fake successful results.

* refactor(search): isolate benchmark env overlays

Move test-only search environment parsing behind an injectable internal adapter. Keep all existing overlay keys and tuner pin semantics while restoring SearchEngineBuilder to composition.

* refactor(search): unify topology routing options

Snapshot topology policy once at the assist boundary and pass it through routing sessions and diagnostics. Remove repeated scalar copying without changing routing behavior or metric keys.

* fix(search): unify tuner config ownership

Use one complete config-to-params overlay for runtime seeding and no-tuner policy resolution. Reseed attached tuners on setConfig so reported and executed configuration cannot diverge.

* fix(search): snapshot tuner state per query

Read tuned config, params, and state under one lock before routing. Add a TSAN correlation test so adaptive observation cannot produce a torn logical query snapshot.

* fix(search): enforce topology routing contract

Generated configs must preserve hybrid-assist shadow routing, while daemon-backed search must abstain when published topology artifacts are stale. Keep standalone validation and global ANN recall intact.

* fix(daemon): let SQLite reclaim its file

Directly resizing a live database from sampled page counts can truncate pages allocated by concurrent writers. VACUUM must remain the only file-reclamation mechanism.

* fix(metadata): tolerate missing symbol FTS

Readiness lookups can race an unavailable optional FTS migration. Retain the indexed fast path, but retry against the base table when prepare or cached-statement execution proves the capability absent.

* build(fuzz): drop removed query parser target

The optional AFL build still referenced the deleted legacy query parser API and could no longer compile.

* fix(bench): include writes in drain oracle

A zero post-ingest queue is not durable drain while coordinated writes remain queued or in flight.

* fix(daemon): vacuum padded WAL databases safely
2026-07-13 20:26:43 -04:00
trvon
a217a41ee7
test: lift coverage for core paths
Add focused API, CLI, doctor, downloader, search, and vector
   infrastructure coverage.

   Cover retry seams, path-scoped search fallback, renderer fail-soft
   paths, router helpers, and model infrastructure without changing
   production behavior.

   Keep coverage gates stable by skipping Zyp on Darwin coverage builds
   and ignoring SIGPIPE in daemon protocol tests.
2026-06-22 10:25:28 -04:00
trvon
a21dc6ae02
fix: test fixes for ci
Signed-off-by: trvon <me@trevon.dev>
2026-06-21 19:57:02 -04:00
Trevon
4228a0c5e9
chore: housekeeping — rm dead code, consolidate MCP tools, add tests, clean docs (#50)
* implemented stubbed IGraphContextService methods

* feat: wire graph communication updates in ipc, mcp and cli

* fix: fix call graph recall and add profiling coverage to graph calls sites

* fix: fixes for work where we added agent navigation to graph tooling

* fix(corpus): clean FTS and KG orphans on document delete

* fix(repair): clean orphans, honor cancellation, surface stats

* fix(rm): order content removal before metadata/KG delete. keep manifest while content is still referenced

* fix(daemon): seed built-in content extractor for readiness

* chore(cli): remove dead stubs and unwired helpers

* feat(search): named-collection scoping + provable relevance gate

* fix(refactor): rm dead stubs, inline simd, add proto/metrics tests

* chore: rm dead interfaces/enums, consolidate guards, add tests

* refactor: rm dr vaporware, collapse download handlers, clean list flags

* docs: rm stale testing investigation logs

* fix: address Copilot review findings from PR #50

- relationship_ops: return existing id when INSERT OR IGNORE skips
- document_crud_ops: propagate FTS5 cleanup error (was silent skip)
- builtin_text_content_extractor: unsigned char cast for tolower, add cctype
- mcp_server download_jobs: validate job_id for status/cancel actions
- list_command tests: unsigned char cast for isspace, add cctype include
2026-06-16 19:37:24 -04:00
trvon
8b7bfe575d
feat: improved search fusion logic and tuning parameters. CI improvements, reverting to push with wrangler in CI. Experimenting with vector rebuild to address additional lost overhead in search 2026-05-05 08:58:20 -04:00
trvon
48a955e793
feat: CLI request handling refactor for unified load and error handling. Continued refactor and improvement of search engine with scoped tuning 2026-04-09 19:38:04 -04:00
trvon
2b2552e34c
feat: Correctness fixes for flaky tests, improvements for linux build logic based on clion change. Improvement of tuning / governor daemon logic to simplify scaling logic 2026-04-09 11:45:57 -04:00
trvon
01c72ec828
fix: test and ci fixes and search improvements. Adding a router for tuning logic 2026-04-09 09:31:00 -04:00
trvon
099bbef70d
feat: large update. Documentation update, config and plugin hardning and improvements related to loading trust. Exposed trust state in the doctor command with hints on improvements. Bug fixes and test improvements to reduce flakiness and TSAN issues 2026-02-26 11:21:29 -05:00
trvon
33821d93f1
feat: test hardening, added benchmark for multiclient and improve stability to support up to 16 clients before performance degrades, improved parallization and request handling in daemon ingestion pipeline 2026-02-16 15:46:16 -05:00
trvon
2946b231dd
fix: license header file updates, mcp improvements, windows build fixes 2026-01-30 17:23:33 -05:00
trvon
36c587e776
bug fixes and test improvements 2026-01-24 11:49:48 -05:00
trvon
5af411d45c
test improvements 2026-01-23 23:00:56 -05:00
trvon
80ea3ca869
testing improvements 2026-01-14 16:27:42 -05:00
trvon
83bd1b7fc1
updating entity interface and adding new plugin for entity extraction 2026-01-08 15:06:58 -05:00
trvon
0bce48a899
bug fixes, extended tree dedup logic for ingestion, dynamic search engine returning with internal benchmark 2026-01-06 18:57:35 -05:00
trvon
523ab8d3b7
ingestion optimizations 2026-01-06 02:02:16 -05:00
trvon
5eadb107d4
test improvements and search bugs fixes 2025-12-31 18:46:32 -05:00
trvon
0557c9b33b
test improvements and linter run 2025-12-31 12:51:28 -05:00
trvon
1589d746d2
linting 2025-12-10 01:04:53 -05:00
trevon
47ea842e64
session update checkpoint 2025-12-09 21:13:19 -05:00
trvon
70e88af608
running linter 2025-11-25 13:10:29 -05:00
trevon
244cf02822
windows build stable on dev machine 2025-11-23 23:22:30 -05:00
trvon
166d8c520d
staging v0.7.7 2025-11-01 16:02:12 -04:00
Trevon
956c43b80b
v0.6.12 experiemental 2025-09-11 11:28:42 -04:00
Trevon
3defa60de5
v0.3.3 clang-format now in use 2025-08-15 15:51:18 -04:00
Trevon
847fefb97a
CHANGELOG updated. v0.0.4 and test improvements 2025-08-11 18:40:05 -04:00
Trevon
917aecf514
yams 2025-08-10 23:41:49 -04:00