Add negative_cases_from_universe to expand an explicit file-by-rule universe into labeled negatives (enabling TP/FP/TN/FN, not just TP/FP), plus project-eval harness updates in run_project_eval and the score/score_fp/quality-gate helpers.
Preserve source, binary, and runtime evidence boundaries while making precision and performance regressions reproducible. - decompose analysis orchestration into bounded modules - add differential, metamorphic, organic, and Yams change-time gates - fix detector, P-Code, fuzz sanitizer, and report identity precision
Clang LibTooling + Z3 BV-64 encoding. 11 detectors: clone, equiv, class-dup, dead, null-deref, div-by-zero, int-overflow, oob, int-truncation, sign-conversion, taint-track. Interfaces: CLI, MCP (JSON-RPC 2.0), LSP. Output: SARIF 2.1.0, JSON, Markdown.
